Wall clock time and date at job start Tue Mar 9 2021 12:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 111.00252 * 2 1 4 4 C 1.39055 * 111.00035 * 123.95385 * 2 1 3 5 5 C 1.39193 * 119.93056 * 119.72040 * 4 2 1 6 6 C 1.50696 * 119.96635 * 0.02562 * 5 4 2 7 7 O 1.42894 * 109.47600 * 74.99689 * 6 5 4 8 8 Si 1.86303 * 109.46891 * 194.99817 * 6 5 4 9 9 C 1.37634 * 120.06434 * 179.72274 * 5 4 2 10 10 C 1.39767 * 119.93255 * 0.55656 * 9 5 4 11 11 C 1.47526 * 120.06992 * 179.74323 * 10 9 5 12 12 O 1.21588 * 119.99786 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00027 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00264 * 179.97438 * 13 11 10 15 15 H 1.09004 * 112.84540 * 25.33560 * 14 13 11 16 16 C 1.53782 * 113.61417 * 156.52785 * 14 13 11 17 17 C 1.53785 * 87.07890 * 89.12164 * 16 14 13 18 18 H 1.09000 * 113.60747 * 270.88264 * 17 16 14 19 19 C 1.50694 * 113.61399 * 140.06556 * 17 16 14 20 20 C 1.38176 * 119.98742 * 299.72499 * 19 17 16 21 21 C 1.38490 * 119.97496 * 179.73241 * 20 19 17 22 22 F 1.35098 * 120.02631 * 180.25411 * 21 20 19 23 23 C 1.38435 * 119.94494 * 0.53817 * 21 20 19 24 24 C 1.38222 * 119.97697 * 359.73469 * 23 21 20 25 25 C 1.38223 * 120.02684 * 359.97438 * 24 23 21 26 26 C 1.53774 * 113.61684 * 254.13628 * 14 13 11 27 27 C 1.39822 * 119.86217 * 359.72097 * 10 9 5 28 28 C 1.37581 * 119.92812 * 359.97438 * 27 10 9 29 29 H 1.09002 * 109.47411 * 296.05070 * 1 2 3 30 30 H 1.09007 * 109.47071 * 56.04643 * 1 2 3 31 31 H 1.08996 * 109.47424 * 176.04443 * 1 2 3 32 32 H 1.09000 * 109.46807 * 183.95307 * 3 2 1 33 33 H 1.08997 * 109.46913 * 303.94937 * 3 2 1 34 34 H 1.09005 * 109.47092 * 63.95447 * 3 2 1 35 35 H 1.08998 * 109.47275 * 314.98852 * 6 5 4 36 36 H 0.96707 * 114.00239 * 59.99986 * 7 6 5 37 37 H 1.48502 * 110.00396 * 58.67916 * 8 6 5 38 38 H 1.48507 * 110.00005 * 179.97438 * 8 6 5 39 39 H 1.08004 * 120.03161 * 180.25804 * 9 5 4 40 40 H 0.97012 * 119.99800 * 359.97438 * 13 11 10 41 41 H 1.09000 * 113.61097 * 203.66878 * 16 14 13 42 42 H 1.08994 * 113.61977 * 334.48768 * 16 14 13 43 43 H 1.07995 * 120.01172 * 359.97438 * 20 19 17 44 44 H 1.08004 * 120.01244 * 179.75120 * 23 21 20 45 45 H 1.08000 * 119.98623 * 180.02562 * 24 23 21 46 46 H 1.07991 * 119.97746 * 180.02562 * 25 24 23 47 47 H 1.09006 * 113.61262 * 25.43482 * 26 14 13 48 48 H 1.09001 * 113.61545 * 156.32731 * 26 14 13 49 49 H 1.07995 * 120.03383 * 180.02562 * 27 10 9 50 50 H 1.08004 * 119.96174 * 179.97438 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9673 -0.7251 1.0768 5 6 2.7745 -1.8365 0.8518 6 6 3.1075 -2.2518 -0.5580 7 8 4.0788 -1.3559 -1.1018 8 14 3.7957 -3.9830 -0.5492 9 6 3.2739 -2.5528 1.9156 10 6 2.9602 -2.1700 3.2228 11 6 3.4893 -2.9390 4.3653 12 8 4.1986 -3.9071 4.1702 13 7 3.1863 -2.5684 5.6252 14 6 3.7112 -3.3323 6.7597 15 1 4.6339 -3.8620 6.5226 16 6 3.7829 -2.5241 8.0660 17 6 2.3460 -2.9960 8.3447 18 1 1.5823 -2.3356 7.9338 19 6 2.0969 -3.3526 9.7874 20 6 2.8295 -4.3594 10.3864 21 6 2.6041 -4.6832 11.7140 22 9 3.3234 -5.6639 12.3021 23 6 1.6371 -4.0050 12.4361 24 6 0.9016 -3.0021 11.8332 25 6 1.1315 -2.6757 10.5099 26 6 2.6561 -4.2118 7.4510 27 6 2.1444 -1.0566 3.4454 28 6 1.6534 -0.3409 2.3779 29 1 -0.3634 0.4513 0.9233 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0828 1.3431 -0.0708 33 1 1.5899 1.9163 -0.8525 34 1 1.7044 1.8724 0.9233 35 1 2.2048 -2.2230 -1.1682 36 1 4.9100 -1.3300 -0.6082 37 1 2.8073 -4.9196 0.0433 38 1 4.1277 -4.4048 -1.9339 39 1 3.9036 -3.4126 1.7405 40 1 2.6207 -1.7957 5.7807 41 1 4.5142 -2.9081 8.7773 42 1 3.8683 -1.4488 7.9102 43 1 3.5803 -4.8910 9.8207 44 1 1.4577 -4.2594 13.4703 45 1 0.1474 -2.4726 12.3965 46 1 0.5567 -1.8917 10.0397 47 1 1.8309 -4.4980 6.7988 48 1 3.0798 -5.0564 7.9944 49 1 1.9006 -0.7581 4.4543 50 1 1.0228 0.5190 2.5492 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_13422196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:38 Heat of formation + Delta-G solvation = -8.179457 kcal Electronic energy + Delta-G solvation = -32731.462180 eV Core-core repulsion = 28220.055375 eV Total energy + Delta-G solvation = -4511.406805 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.168 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -49.92878 -41.87472 -41.19444 -40.14546 -38.70032 -37.80098 -37.17407 -34.75663 -32.79640 -31.90787 -31.48161 -31.05227 -28.53523 -26.90818 -26.84828 -26.70993 -25.68574 -23.84184 -23.32811 -22.87512 -22.59361 -21.33024 -20.29882 -19.11666 -18.53506 -17.86656 -17.62344 -17.26906 -17.20526 -17.03577 -16.63732 -16.55805 -16.36366 -16.12348 -15.97507 -15.62835 -15.51886 -15.43003 -15.02082 -14.80753 -14.72510 -14.64561 -14.22087 -14.17733 -13.98038 -13.88128 -13.55941 -13.44240 -13.10468 -13.01774 -12.92553 -12.89724 -12.64898 -12.53780 -12.45914 -12.25196 -12.04753 -11.95902 -11.69602 -11.19976 -11.10554 -10.39327 -10.20382 -10.08933 -9.89029 -9.75434 -9.60982 -9.49523 -5.03195 -0.37074 0.17121 0.17450 0.23553 1.27463 1.55998 1.67753 1.89558 2.00363 2.57784 2.64937 2.80634 3.23059 3.47285 3.51964 3.58743 3.64305 3.68913 3.71841 3.82521 3.83580 3.95732 4.04813 4.07902 4.16365 4.24047 4.25699 4.29207 4.36987 4.42698 4.45676 4.50840 4.59983 4.63196 4.67123 4.76622 4.77457 4.85856 4.88667 4.93786 4.94566 5.01648 5.01978 5.04810 5.11605 5.12401 5.15843 5.19216 5.27571 5.37710 5.49261 5.57168 5.63961 5.86132 5.94601 6.30175 6.45844 6.82339 7.13719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.525 5.525 3 C 0.034 3.966 4 C 0.137 3.863 5 C -0.117 4.117 6 C -0.036 4.036 7 O -0.542 6.542 8 Si 0.735 3.265 9 C -0.058 4.058 10 C -0.147 4.147 11 C 0.561 3.439 12 O -0.573 6.573 13 N -0.693 5.693 14 C 0.116 3.884 15 H 0.087 0.913 16 C -0.124 4.124 17 C -0.064 4.064 18 H 0.124 0.876 19 C -0.046 4.046 20 C -0.160 4.160 21 C 0.071 3.929 22 F -0.156 7.156 23 C -0.170 4.170 24 C -0.091 4.091 25 C -0.125 4.125 26 C -0.147 4.147 27 C -0.055 4.055 28 C -0.157 4.157 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.107 0.893 36 H 0.389 0.611 37 H -0.296 1.296 38 H -0.290 1.290 39 H 0.140 0.860 40 H 0.416 0.584 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.070 0.930 48 H 0.091 0.909 49 H 0.162 0.838 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.554 8.095 3.342 9.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.246 5.246 3 C -0.112 4.112 4 C 0.042 3.958 5 C -0.119 4.119 6 C -0.148 4.148 7 O -0.348 6.348 8 Si 0.642 3.358 9 C -0.077 4.077 10 C -0.151 4.151 11 C 0.350 3.650 12 O -0.453 6.453 13 N -0.345 5.345 14 C 0.010 3.990 15 H 0.105 0.895 16 C -0.161 4.161 17 C -0.082 4.082 18 H 0.142 0.858 19 C -0.046 4.046 20 C -0.179 4.179 21 C 0.052 3.948 22 F -0.135 7.135 23 C -0.189 4.189 24 C -0.109 4.109 25 C -0.143 4.143 26 C -0.185 4.185 27 C -0.074 4.074 28 C -0.177 4.177 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.124 0.876 36 H 0.238 0.762 37 H -0.223 1.223 38 H -0.218 1.218 39 H 0.157 0.843 40 H 0.255 0.745 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.173 0.827 46 H 0.173 0.827 47 H 0.088 0.912 48 H 0.109 0.891 49 H 0.180 0.820 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.439 6.455 2.082 7.604 hybrid contribution -0.779 0.199 0.868 1.184 sum -4.218 6.654 2.950 8.412 Atomic orbital electron populations 1.22530 0.84840 1.02658 1.02173 1.59359 1.09090 1.15383 1.40784 1.22424 1.01018 0.86090 1.01629 1.18987 0.94077 0.93087 0.89630 1.20237 0.99653 0.96211 0.95767 1.24670 0.95210 1.03192 0.91741 1.86518 1.27633 1.65225 1.55455 0.94252 0.87667 0.73866 0.79987 1.21075 0.97158 0.98186 0.91248 1.19832 1.03418 0.98990 0.92813 1.18368 0.79561 0.83440 0.83665 1.90799 1.39345 1.29312 1.85858 1.45428 1.52327 1.32647 1.04083 1.21849 0.97523 0.94102 0.85492 0.89461 1.23361 0.96121 1.01722 0.94944 1.21717 0.98610 0.98280 0.89631 0.85769 1.19712 0.94706 0.94079 0.96082 1.21143 1.03044 1.00596 0.93094 1.18065 0.94416 0.89541 0.92764 1.91473 1.76923 1.60592 1.84494 1.21424 0.97147 0.98653 1.01637 1.21366 0.98541 0.95553 0.95393 1.21501 0.97926 1.00579 0.94285 1.23617 0.99397 0.97344 0.98172 1.21445 0.93320 0.91950 1.00679 1.21847 1.01961 1.01649 0.92235 0.93644 0.89927 0.91861 0.91415 0.90303 0.93963 0.87578 0.76211 1.22288 1.21760 0.84315 0.74539 0.88477 0.88566 0.84397 0.84209 0.82701 0.82721 0.91157 0.89067 0.82032 0.83349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.34 127.69 1.19 1.12 16 2 N -0.53 0.05 4.20 -745.10 -3.13 -3.08 16 3 C 0.03 -0.09 9.38 127.69 1.20 1.11 16 4 C 0.14 -0.02 4.70 38.47 0.18 0.16 16 5 C -0.12 -0.18 5.27 -19.78 -0.10 -0.28 16 6 C -0.04 -0.09 2.33 71.23 0.17 0.08 16 7 O -0.54 -1.15 12.88 -148.98 -1.92 -3.07 16 8 Si 0.73 2.27 29.92 68.60 2.05 4.32 16 9 C -0.06 -0.11 8.19 22.50 0.18 0.08 16 10 C -0.15 0.03 5.88 -20.08 -0.12 -0.08 16 11 C 0.56 1.40 7.76 86.69 0.67 2.08 16 12 O -0.57 -6.34 15.95 -3.99 -0.06 -6.41 16 13 N -0.69 3.14 5.21 -443.22 -2.31 0.83 16 14 C 0.12 -0.39 4.30 45.52 0.20 -0.20 16 15 H 0.09 0.13 7.50 -2.38 -0.02 0.11 16 16 C -0.12 0.93 7.29 31.12 0.23 1.15 16 17 C -0.06 0.48 3.87 -10.92 -0.04 0.43 16 18 H 0.12 -1.45 8.09 -2.39 -0.02 -1.47 16 19 C -0.05 0.16 5.29 -19.87 -0.11 0.05 16 20 C -0.16 -0.09 8.61 22.31 0.19 0.10 16 21 C 0.07 0.28 7.30 22.38 0.16 0.44 16 22 F -0.16 -1.23 17.27 44.97 0.78 -0.46 16 23 C -0.17 -0.12 10.03 22.31 0.22 0.11 16 24 C -0.09 0.31 10.04 22.26 0.22 0.54 16 25 C -0.13 0.62 9.71 22.27 0.22 0.83 16 26 C -0.15 0.54 7.27 31.21 0.23 0.76 16 27 C -0.05 0.33 9.53 22.50 0.21 0.54 16 28 C -0.16 0.71 8.53 22.36 0.19 0.90 16 29 H 0.05 -0.25 7.10 -2.39 -0.02 -0.27 16 30 H 0.08 -0.34 8.12 -2.38 -0.02 -0.36 16 31 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.08 -0.27 8.12 -2.39 -0.02 -0.29 16 34 H 0.04 -0.22 7.32 -2.38 -0.02 -0.24 16 35 H 0.11 0.53 7.77 -2.39 -0.02 0.51 16 36 H 0.39 -2.14 8.70 -74.05 -0.64 -2.79 16 37 H -0.30 -2.79 7.11 99.48 0.71 -2.08 16 38 H -0.29 -2.73 7.11 99.48 0.71 -2.02 16 39 H 0.14 0.32 4.70 -2.91 -0.01 0.31 16 40 H 0.42 -4.72 6.72 -92.70 -0.62 -5.35 16 41 H 0.10 -0.61 7.73 -2.39 -0.02 -0.62 16 42 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 43 H 0.14 -0.12 6.65 -2.91 -0.02 -0.13 16 44 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 45 H 0.16 -1.28 8.06 -2.91 -0.02 -1.31 16 46 H 0.16 -1.61 8.05 -2.92 -0.02 -1.63 16 47 H 0.07 -0.14 8.14 -2.38 -0.02 -0.15 16 48 H 0.09 -0.22 6.31 -2.39 -0.02 -0.24 16 49 H 0.16 -2.18 6.39 -2.91 -0.02 -2.20 16 50 H 0.15 -1.23 6.99 -2.91 -0.02 -1.25 16 Total: 0.00 -21.32 409.20 0.47 -20.86 By element: Atomic # 1 Polarization: -22.67 SS G_CDS: -0.24 Total: -22.91 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 5.30 Total: 9.92 kcal Atomic # 7 Polarization: 3.19 SS G_CDS: -5.44 Total: -2.25 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -1.98 Total: -9.48 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.78 Total: -0.46 kcal Atomic # 14 Polarization: 2.27 SS G_CDS: 2.05 Total: 4.32 kcal Total: -21.32 0.47 -20.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_13422196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.678 kcal (2) G-P(sol) polarization free energy of solvation -21.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds