Wall clock time and date at job start Tue Mar 9 2021 13:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47190 * 2 1 4 4 C 1.50697 * 109.47590 * 239.99812 * 2 1 3 5 5 C 1.38714 * 120.02909 * 284.72404 * 4 2 1 6 6 O 1.35894 * 120.05237 * 359.97438 * 5 4 2 7 7 C 1.42906 * 116.99812 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47014 * 180.02562 * 7 6 5 9 9 O 1.21283 * 120.00281 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99848 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99806 * 179.97438 * 10 8 7 12 12 H 1.08994 * 112.84879 * 336.18670 * 11 10 8 13 13 C 1.53780 * 113.61533 * 107.49980 * 11 10 8 14 14 C 1.53776 * 87.08325 * 89.11226 * 13 11 10 15 15 H 1.09004 * 113.61655 * 270.88722 * 14 13 11 16 16 C 1.50696 * 113.69269 * 139.99107 * 14 13 11 17 17 C 1.38184 * 119.98558 * 322.19249 * 16 14 13 18 18 C 1.38477 * 119.97169 * 179.74554 * 17 16 14 19 19 F 1.35101 * 120.02762 * 180.27274 * 18 17 16 20 20 C 1.38443 * 119.94905 * 0.50633 * 18 17 16 21 21 C 1.38217 * 119.97434 * 359.74442 * 20 18 17 22 22 C 1.38218 * 120.02355 * 0.02695 * 21 20 18 23 23 C 1.53779 * 113.61021 * 204.99581 * 11 10 8 24 24 C 1.38757 * 119.88828 * 179.74287 * 5 4 2 25 25 C 1.38126 * 119.94230 * 0.53132 * 24 5 4 26 26 C 1.38288 * 120.05611 * 359.72206 * 25 24 5 27 27 C 1.38165 * 120.02832 * 104.99735 * 4 2 1 28 28 H 0.96695 * 114.00385 * 300.00492 * 1 2 3 29 29 H 1.09001 * 109.47255 * 120.00067 * 2 1 3 30 30 H 1.48506 * 110.00048 * 300.00131 * 3 2 1 31 31 H 1.48502 * 109.99996 * 61.31456 * 3 2 1 32 32 H 1.09001 * 109.47031 * 299.99942 * 7 6 5 33 33 H 1.08997 * 109.47073 * 60.00046 * 7 6 5 34 34 H 0.97000 * 120.00020 * 359.97438 * 10 8 7 35 35 H 1.09004 * 113.61216 * 203.66324 * 13 11 10 36 36 H 1.09002 * 113.61580 * 334.56098 * 13 11 10 37 37 H 1.07994 * 120.01326 * 359.97438 * 17 16 14 38 38 H 1.07998 * 120.00948 * 179.77019 * 20 18 17 39 39 H 1.08004 * 119.98506 * 179.97438 * 21 20 18 40 40 H 1.08008 * 119.97244 * 179.97438 * 22 21 20 41 41 H 1.08996 * 113.61572 * 25.43394 * 23 11 10 42 42 H 1.09004 * 113.61293 * 156.33305 * 23 11 10 43 43 H 1.07993 * 120.02731 * 180.27390 * 24 5 4 44 44 H 1.07997 * 119.96896 * 179.74483 * 25 24 5 45 45 H 1.08001 * 119.94563 * 180.02562 * 26 25 24 46 46 H 1.08005 * 119.97560 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.8751 -2.0944 -1.3045 6 8 1.3673 -2.8114 -0.2677 7 6 1.3399 -4.2327 -0.4137 8 6 0.7478 -4.8535 0.8253 9 8 0.3854 -4.1484 1.7431 10 7 0.6219 -6.1925 0.9138 11 6 0.0468 -6.7961 2.1185 12 1 0.1414 -6.1588 2.9976 13 6 -1.3703 -7.3560 1.9106 14 6 -0.7025 -8.6795 1.5017 15 1 -0.4794 -8.7453 0.4367 16 6 -1.4087 -9.9021 2.0283 17 6 -1.9615 -9.8886 3.2946 18 6 -2.6150 -11.0105 3.7762 19 9 -3.1606 -10.9967 5.0120 20 6 -2.7045 -12.1480 2.9921 21 6 -2.1464 -12.1609 1.7277 22 6 -1.4984 -11.0389 1.2463 23 6 0.4998 -8.2462 2.3572 24 6 2.3336 -2.7452 -2.4410 25 6 2.8549 -2.0145 -3.4908 26 6 2.9148 -0.6352 -3.4123 27 6 2.4537 0.0159 -2.2833 28 1 -0.3934 0.4417 0.7649 29 1 1.7923 -0.5138 0.8900 30 1 1.5614 2.4679 -1.2085 31 1 1.5878 2.4586 1.2242 32 1 0.7317 -4.4975 -1.2785 33 1 2.3551 -4.6029 -0.5564 34 1 0.9121 -6.7565 0.1799 35 1 -1.9513 -7.4260 2.8302 36 1 -1.9159 -6.8734 1.0997 37 1 -1.8871 -9.0023 3.9071 38 1 -3.2108 -13.0248 3.3682 39 1 -2.2158 -13.0483 1.1161 40 1 -1.0622 -11.0500 0.2583 41 1 1.4639 -8.4822 1.9069 42 1 0.4300 -8.5595 3.3989 43 1 2.2867 -3.8224 -2.5029 44 1 3.2157 -2.5209 -4.3739 45 1 3.3224 -0.0656 -4.2344 46 1 2.5015 1.0933 -2.2245 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_2989392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:10 Heat of formation + Delta-G solvation = -56.618147 kcal Electronic energy + Delta-G solvation = -30231.393555 eV Core-core repulsion = 25775.705248 eV Total energy + Delta-G solvation = -4455.688307 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.94833 -41.79609 -41.28511 -40.25587 -38.89136 -38.26459 -37.62277 -34.73615 -32.88749 -32.02533 -31.49763 -31.17089 -29.36737 -26.74767 -26.65957 -26.23897 -23.98177 -23.52590 -22.71096 -22.48010 -21.81956 -20.30819 -19.32251 -18.71677 -18.60386 -18.15176 -17.41673 -17.32236 -17.28430 -17.05271 -16.88530 -16.69383 -16.65413 -15.88463 -15.65104 -15.52873 -15.39724 -15.18825 -14.93318 -14.78221 -14.64235 -14.21560 -13.95036 -13.92663 -13.81873 -13.63071 -13.47563 -13.09003 -12.97456 -12.94753 -12.63654 -12.48592 -12.11274 -11.99119 -11.82397 -11.77490 -11.72930 -11.24771 -11.04092 -10.44732 -10.20771 -9.95610 -9.90153 -9.62751 -9.20363 -4.97577 0.15811 0.21738 0.24145 0.43295 1.27168 1.39839 1.45588 1.55994 1.88227 2.56238 2.57561 2.67584 3.21024 3.44024 3.45407 3.50379 3.61401 3.66092 3.78396 3.80402 3.92146 3.94286 3.97456 4.05292 4.08376 4.17276 4.22414 4.26004 4.27020 4.35352 4.41145 4.53303 4.59418 4.67563 4.72586 4.79484 4.86057 4.91979 4.98175 4.98307 5.09285 5.10582 5.17251 5.29334 5.35678 5.40234 5.46115 5.54039 5.60141 5.76887 5.93031 6.27157 6.44705 6.55473 7.10404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.085 4.085 3 Si 0.779 3.221 4 C -0.130 4.130 5 C 0.129 3.871 6 O -0.313 6.313 7 C 0.036 3.964 8 C 0.516 3.484 9 O -0.570 6.570 10 N -0.690 5.690 11 C 0.116 3.884 12 H 0.080 0.920 13 C -0.147 4.147 14 C -0.062 4.062 15 H 0.128 0.872 16 C -0.047 4.047 17 C -0.161 4.161 18 C 0.070 3.930 19 F -0.156 7.156 20 C -0.169 4.169 21 C -0.090 4.090 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.210 4.210 25 C -0.074 4.074 26 C -0.155 4.155 27 C -0.090 4.090 28 H 0.388 0.612 29 H 0.066 0.934 30 H -0.283 1.283 31 H -0.291 1.291 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.423 0.577 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.159 0.841 44 H 0.157 0.843 45 H 0.151 0.849 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.396 -5.328 -7.220 11.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.193 4.193 3 Si 0.683 3.317 4 C -0.131 4.131 5 C 0.083 3.917 6 O -0.226 6.226 7 C -0.042 4.042 8 C 0.302 3.698 9 O -0.448 6.448 10 N -0.344 5.344 11 C 0.010 3.990 12 H 0.099 0.901 13 C -0.186 4.186 14 C -0.080 4.080 15 H 0.146 0.854 16 C -0.047 4.047 17 C -0.180 4.180 18 C 0.052 3.948 19 F -0.135 7.135 20 C -0.188 4.188 21 C -0.108 4.108 22 C -0.142 4.142 23 C -0.161 4.161 24 C -0.229 4.229 25 C -0.092 4.092 26 C -0.173 4.173 27 C -0.108 4.108 28 H 0.237 0.763 29 H 0.084 0.916 30 H -0.210 1.210 31 H -0.219 1.219 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.261 0.739 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.174 0.826 40 H 0.174 0.826 41 H 0.117 0.883 42 H 0.113 0.887 43 H 0.177 0.823 44 H 0.175 0.825 45 H 0.169 0.831 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.928 -4.256 -6.870 10.023 hybrid contribution -1.676 -0.484 1.042 2.032 sum 4.252 -4.740 -5.829 8.633 Atomic orbital electron populations 1.86547 1.19015 1.80786 1.50225 1.25028 0.83806 1.12329 0.98108 0.94124 0.89872 0.71158 0.76535 1.18855 1.05707 0.91054 0.97500 1.19041 0.94195 0.90941 0.87514 1.86155 1.78283 1.18739 1.39423 1.22721 1.04749 0.79828 0.96861 1.20541 0.78039 0.82959 0.88259 1.90765 1.50128 1.62534 1.41402 1.45298 1.63374 1.05402 1.20346 1.21823 0.94324 0.94696 0.88130 0.90135 1.23571 0.96480 0.95862 1.02677 1.21671 0.95335 0.89775 1.01237 0.85390 1.19715 0.96488 0.96034 0.92429 1.21135 1.01012 0.97853 0.98011 1.18070 0.99047 0.96786 0.80946 1.91473 1.84091 1.97174 1.40788 1.21430 1.03555 0.97710 0.96099 1.21378 0.95426 0.99760 0.94237 1.21508 0.99341 0.92089 1.01216 1.23365 0.98915 0.92187 1.01594 1.21611 1.05505 1.01973 0.93788 1.21418 0.95420 0.94001 0.98341 1.21399 1.02167 0.95318 0.98432 1.21147 0.96880 1.00282 0.92459 0.76310 0.91599 1.21004 1.21853 0.86225 0.85396 0.73895 0.89322 0.91048 0.84621 0.84164 0.82593 0.82563 0.88320 0.88682 0.82311 0.82500 0.83133 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -6.08 12.86 -148.98 -1.92 -7.99 16 2 C -0.09 -0.62 2.37 71.23 0.17 -0.45 16 3 Si 0.78 1.68 30.20 68.60 2.07 3.76 16 4 C -0.13 -0.91 5.30 -19.77 -0.10 -1.01 16 5 C 0.13 0.74 6.66 22.51 0.15 0.89 16 6 O -0.31 -2.49 9.00 -73.32 -0.66 -3.15 16 7 C 0.04 -0.08 5.22 71.24 0.37 0.29 16 8 C 0.52 1.54 7.91 87.66 0.69 2.23 16 9 O -0.57 -8.64 16.10 16.00 0.26 -8.38 16 10 N -0.69 3.47 5.26 -440.04 -2.32 1.16 16 11 C 0.12 -0.29 4.32 45.52 0.20 -0.10 16 12 H 0.08 0.28 7.46 -2.39 -0.02 0.27 16 13 C -0.15 0.43 7.26 31.12 0.23 0.66 16 14 C -0.06 0.45 3.85 -11.02 -0.04 0.41 16 15 H 0.13 -1.54 8.09 -2.38 -0.02 -1.56 16 16 C -0.05 0.14 5.29 -19.87 -0.11 0.04 16 17 C -0.16 -0.19 8.58 22.31 0.19 0.00 16 18 C 0.07 0.31 7.30 22.38 0.16 0.48 16 19 F -0.16 -1.33 17.27 44.97 0.78 -0.55 16 20 C -0.17 -0.16 10.03 22.31 0.22 0.06 16 21 C -0.09 0.30 10.04 22.26 0.22 0.52 16 22 C -0.12 0.60 9.71 22.27 0.22 0.82 16 23 C -0.12 0.86 7.29 31.12 0.23 1.09 16 24 C -0.21 0.24 9.04 22.37 0.20 0.44 16 25 C -0.07 0.20 10.04 22.26 0.22 0.43 16 26 C -0.16 0.14 10.04 22.28 0.22 0.36 16 27 C -0.09 -0.26 8.66 22.25 0.19 -0.07 16 28 H 0.39 1.42 8.74 -74.06 -0.65 0.77 16 29 H 0.07 0.54 7.82 -2.39 -0.02 0.52 16 30 H -0.28 -1.84 6.75 99.48 0.67 -1.17 16 31 H -0.29 -1.95 7.11 99.48 0.71 -1.24 16 32 H 0.12 -0.94 7.65 -2.39 -0.02 -0.96 16 33 H 0.13 -1.21 7.67 -2.39 -0.02 -1.23 16 34 H 0.42 -5.60 8.70 -92.71 -0.81 -6.41 16 35 H 0.09 -0.11 6.33 -2.38 -0.02 -0.13 16 36 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.14 0.02 6.68 -2.91 -0.02 0.00 16 38 H 0.14 -0.17 8.06 -2.91 -0.02 -0.19 16 39 H 0.16 -1.29 8.06 -2.91 -0.02 -1.32 16 40 H 0.16 -1.64 8.05 -2.91 -0.02 -1.67 16 41 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 42 H 0.09 -0.51 7.71 -2.38 -0.02 -0.53 16 43 H 0.16 -1.32 6.30 -2.91 -0.02 -1.34 16 44 H 0.16 -1.37 8.06 -2.91 -0.02 -1.39 16 45 H 0.15 -0.87 8.06 -2.91 -0.02 -0.89 16 46 H 0.14 0.07 4.90 -2.91 -0.01 0.06 16 Total: 0.00 -29.09 388.09 1.45 -27.65 By element: Atomic # 1 Polarization: -19.15 SS G_CDS: -0.41 Total: -19.56 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 3.64 Total: 7.08 kcal Atomic # 7 Polarization: 3.47 SS G_CDS: -2.32 Total: 1.16 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -2.32 Total: -19.52 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.78 Total: -0.55 kcal Atomic # 14 Polarization: 1.68 SS G_CDS: 2.07 Total: 3.76 kcal Total: -29.09 1.45 -27.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_2989392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.971 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds