Wall clock time and date at job start Tue Mar 9 2021 13:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86303 * 109.46752 * 2 1 4 4 C 1.50702 * 109.47024 * 119.99288 * 2 1 3 5 5 C 1.38271 * 119.93932 * 65.00737 * 4 2 1 6 6 C 1.38145 * 120.05403 * 179.97438 * 5 4 2 7 7 C 1.38730 * 119.94416 * 359.97438 * 6 5 4 8 8 O 1.35899 * 120.05316 * 180.02562 * 7 6 5 9 9 C 1.42902 * 116.99732 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47178 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47208 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 H 1.09007 * 112.85337 * 23.80486 * 14 13 11 16 16 C 1.53787 * 113.61173 * 154.99569 * 14 13 11 17 17 C 1.53781 * 87.07999 * 89.11873 * 16 14 13 18 18 H 1.09007 * 113.61195 * 270.88565 * 17 16 14 19 19 C 1.50692 * 113.61839 * 140.06445 * 17 16 14 20 20 C 1.38228 * 119.98705 * 119.99464 * 19 17 16 21 21 C 1.38274 * 120.05128 * 179.97438 * 20 19 17 22 22 C 1.38172 * 120.02417 * 0.02562 * 21 20 19 23 23 C 1.38482 * 119.97702 * 0.02562 * 22 21 20 24 24 F 1.35101 * 120.02961 * 180.02562 * 23 22 21 25 25 C 1.38222 * 119.98866 * 299.72401 * 19 17 16 26 26 C 1.53777 * 113.61648 * 252.49385 * 14 13 11 27 27 C 1.38729 * 119.88881 * 0.28065 * 7 6 5 28 28 C 1.38149 * 119.94520 * 359.46641 * 27 7 6 29 29 H 0.96696 * 113.99795 * 299.99913 * 1 2 3 30 30 H 1.08996 * 109.47118 * 239.99866 * 2 1 3 31 31 H 1.48504 * 110.00112 * 299.99664 * 3 2 1 32 32 H 1.48494 * 110.00419 * 61.31843 * 3 2 1 33 33 H 1.08002 * 119.96895 * 359.97438 * 5 4 2 34 34 H 1.07999 * 120.02545 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47600 * 60.00051 * 9 8 7 36 36 H 1.08998 * 109.47515 * 300.00028 * 9 8 7 37 37 H 1.09009 * 109.46730 * 59.99802 * 10 9 8 38 38 H 1.08998 * 109.46846 * 300.00347 * 10 9 8 39 39 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 40 40 H 1.08999 * 113.61440 * 203.66066 * 16 14 13 41 41 H 1.08996 * 113.61401 * 334.56787 * 16 14 13 42 42 H 1.08002 * 119.97558 * 359.96088 * 20 19 17 43 43 H 1.07995 * 119.98832 * 179.97438 * 21 20 19 44 44 H 1.08002 * 120.01368 * 179.97438 * 22 21 20 45 45 H 1.08004 * 120.00908 * 0.02562 * 25 19 17 46 46 H 1.08999 * 113.61256 * 25.43033 * 26 14 13 47 47 H 1.08996 * 113.61858 * 156.33582 * 26 14 13 48 48 H 1.08000 * 120.03011 * 179.71639 * 27 7 6 49 49 H 1.07996 * 119.97441 * 180.23011 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 1.6841 -2.0604 1.3973 6 6 2.1439 -2.7140 2.5242 7 6 2.8547 -2.0146 3.4887 8 8 3.3085 -2.6555 4.5978 9 6 4.0324 -1.8723 5.5490 10 6 4.4597 -2.7591 6.7203 11 6 5.2236 -1.9333 7.7231 12 8 5.4085 -0.7519 7.5206 13 7 5.7065 -2.5090 8.8419 14 6 6.4543 -1.7075 9.8138 15 1 6.2157 -0.6453 9.7595 16 6 6.4136 -2.2757 11.2423 17 6 7.6647 -3.0888 10.8702 18 1 7.4392 -4.0628 10.4358 19 6 8.6869 -3.1632 11.9749 20 6 9.0573 -4.3905 12.4918 21 6 9.9956 -4.4604 13.5052 22 6 10.5635 -3.3032 14.0025 23 6 10.1924 -2.0730 13.4862 24 9 10.7475 -0.9408 13.9713 25 6 9.2579 -2.0047 12.4671 26 6 7.9636 -2.0020 9.8240 27 6 3.0969 -0.6589 3.3215 28 6 2.6395 -0.0110 2.1904 29 1 -0.3933 0.4417 0.7650 30 1 1.7924 -0.5138 -0.8899 31 1 1.5614 2.4679 -1.2086 32 1 1.5878 2.4587 1.2241 33 1 1.1310 -2.6044 0.6459 34 1 1.9501 -3.7685 2.6542 35 1 3.3963 -1.0668 5.9159 36 1 4.9168 -1.4486 5.0731 37 1 5.0961 -3.5644 6.3531 38 1 3.5755 -3.1831 7.1963 39 1 5.5589 -3.4540 9.0037 40 1 6.5927 -1.5280 12.0149 41 1 5.5365 -2.8911 11.4425 42 1 8.6135 -5.2956 12.1041 43 1 10.2839 -5.4198 13.9086 44 1 11.2960 -3.3580 14.7943 45 1 8.9712 -1.0461 12.0603 46 1 8.3378 -2.3965 8.8793 47 1 8.5664 -1.1795 10.2088 48 1 3.6461 -0.1113 4.0731 49 1 2.8310 1.0436 2.0580 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:17 Heat of formation + Delta-G solvation = -68.232094 kcal Electronic energy + Delta-G solvation = -31168.089523 eV Core-core repulsion = 26556.359978 eV Total energy + Delta-G solvation = -4611.729545 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.157 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.93733 -41.67046 -41.26004 -40.34584 -39.23198 -38.66734 -37.29537 -34.66036 -33.33229 -32.10749 -31.78493 -31.48991 -31.27715 -26.97665 -26.72008 -26.24738 -25.39350 -23.85420 -23.47392 -22.67824 -22.23896 -21.55127 -20.23318 -19.55221 -18.67199 -18.40660 -17.71300 -17.47115 -17.27792 -17.17879 -17.04641 -16.86790 -16.64460 -16.42538 -16.14629 -16.03035 -15.69089 -15.52018 -15.27476 -14.79764 -14.75383 -14.60947 -14.38730 -14.30414 -14.29067 -13.98178 -13.85757 -13.50312 -13.47699 -13.01116 -12.95515 -12.82885 -12.78901 -12.46043 -12.28206 -12.06717 -11.96809 -11.78069 -11.69561 -11.58703 -11.21653 -11.06823 -10.59503 -10.13319 -10.03735 -9.88874 -9.61785 -9.22580 -4.93698 0.16678 0.22651 0.27993 0.30813 1.31293 1.51052 1.57546 1.69089 1.93313 2.47221 2.57248 2.64987 3.22342 3.44129 3.48089 3.55873 3.63284 3.67097 3.72136 3.81508 3.82882 3.88743 3.91235 3.95893 4.02764 4.06543 4.23328 4.26199 4.28702 4.34609 4.42084 4.44743 4.56234 4.63431 4.68314 4.70145 4.75011 4.79342 4.83322 4.89963 4.93620 4.97870 5.00794 5.11257 5.13149 5.18146 5.18934 5.28931 5.37403 5.49426 5.49815 5.63208 5.72174 5.93842 6.32116 6.46956 6.48683 7.16857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.074 4.074 3 Si 0.758 3.242 4 C -0.158 4.158 5 C -0.058 4.058 6 C -0.158 4.158 7 C 0.124 3.876 8 O -0.320 6.320 9 C 0.072 3.928 10 C -0.132 4.132 11 C 0.522 3.478 12 O -0.583 6.583 13 N -0.696 5.696 14 C 0.116 3.884 15 H 0.083 0.917 16 C -0.126 4.126 17 C -0.064 4.064 18 H 0.126 0.874 19 C -0.046 4.046 20 C -0.125 4.125 21 C -0.090 4.090 22 C -0.170 4.170 23 C 0.071 3.929 24 F -0.156 7.156 25 C -0.161 4.161 26 C -0.145 4.145 27 C -0.210 4.210 28 C -0.082 4.082 29 H 0.385 0.615 30 H 0.127 0.873 31 H -0.302 1.302 32 H -0.286 1.286 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.420 0.580 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.139 0.861 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.206 -6.924 2.268 7.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.183 4.183 3 Si 0.665 3.335 4 C -0.159 4.159 5 C -0.076 4.076 6 C -0.176 4.176 7 C 0.079 3.921 8 O -0.234 6.234 9 C -0.004 4.004 10 C -0.171 4.171 11 C 0.310 3.690 12 O -0.463 6.463 13 N -0.349 5.349 14 C 0.010 3.990 15 H 0.101 0.899 16 C -0.164 4.164 17 C -0.082 4.082 18 H 0.143 0.857 19 C -0.046 4.046 20 C -0.143 4.143 21 C -0.108 4.108 22 C -0.188 4.188 23 C 0.052 3.948 24 F -0.135 7.135 25 C -0.179 4.179 26 C -0.184 4.184 27 C -0.229 4.229 28 C -0.099 4.099 29 H 0.234 0.766 30 H 0.144 0.856 31 H -0.230 1.230 32 H -0.213 1.213 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.258 0.742 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.173 0.827 43 H 0.173 0.827 44 H 0.158 0.842 45 H 0.155 0.845 46 H 0.092 0.908 47 H 0.107 0.893 48 H 0.156 0.844 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.226 -5.735 1.676 6.099 hybrid contribution -0.701 0.364 0.956 1.240 sum 0.525 -5.372 2.632 6.005 Atomic orbital electron populations 1.86566 1.18628 1.80308 1.50145 1.25086 0.83282 1.11273 0.98670 0.94120 0.90570 0.72651 0.76190 1.20238 1.02627 0.95195 0.97837 1.20999 0.96544 0.93655 0.96436 1.20680 1.01708 1.01414 0.93830 1.19181 0.94530 0.91281 0.87142 1.85956 1.69213 1.38778 1.29454 1.22465 0.95814 0.93646 0.88462 1.21435 1.03077 0.99114 0.93480 1.20670 0.78394 0.87494 0.82487 1.90748 1.60057 1.18227 1.77275 1.45499 1.55072 1.13982 1.20306 1.21809 0.91887 0.96168 0.89172 0.89854 1.23369 0.98171 0.99781 0.95087 1.21673 0.93333 1.00124 0.93096 0.85654 1.19720 0.96328 0.92051 0.96517 1.21510 0.97748 0.98206 0.96841 1.21371 0.95284 0.98420 0.95746 1.21425 1.03174 0.91408 1.02827 1.18069 0.97190 0.82351 0.97210 1.91474 1.84389 1.50308 1.87308 1.21137 0.98371 1.00829 0.97587 1.23553 0.96206 0.99087 0.99526 1.21406 1.06560 0.93947 1.00976 1.21019 0.96078 1.00064 0.92778 0.76586 0.85572 1.22997 1.21322 0.84100 0.83924 0.91831 0.91504 0.85253 0.85414 0.74170 0.88801 0.88760 0.82718 0.82682 0.84180 0.84476 0.90821 0.89283 0.84363 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.80 12.83 -148.98 -1.91 -3.71 16 2 C -0.07 -0.02 2.80 71.24 0.20 0.18 16 3 Si 0.76 -0.40 29.88 68.60 2.05 1.64 16 4 C -0.16 -0.20 5.35 -19.85 -0.11 -0.31 16 5 C -0.06 -0.09 9.68 22.26 0.22 0.12 16 6 C -0.16 -0.35 9.99 22.37 0.22 -0.13 16 7 C 0.12 0.43 6.69 22.50 0.15 0.58 16 8 O -0.32 -0.70 10.14 -92.41 -0.94 -1.64 16 9 C 0.07 -0.03 4.03 71.98 0.29 0.26 16 10 C -0.13 0.82 6.07 29.85 0.18 1.00 16 11 C 0.52 -0.68 7.83 87.66 0.69 0.00 16 12 O -0.58 -4.87 15.58 -3.04 -0.05 -4.91 16 13 N -0.70 4.64 5.26 -440.03 -2.32 2.32 16 14 C 0.12 -0.48 4.32 45.52 0.20 -0.28 16 15 H 0.08 0.10 7.47 -2.38 -0.02 0.08 16 16 C -0.13 0.94 7.29 31.12 0.23 1.16 16 17 C -0.06 0.49 3.85 -11.01 -0.04 0.45 16 18 H 0.13 -1.50 8.09 -2.38 -0.02 -1.52 16 19 C -0.05 0.16 5.29 -19.87 -0.11 0.05 16 20 C -0.13 0.61 9.71 22.28 0.22 0.83 16 21 C -0.09 0.31 10.04 22.26 0.22 0.53 16 22 C -0.17 -0.11 10.03 22.31 0.22 0.11 16 23 C 0.07 0.28 7.30 22.38 0.16 0.44 16 24 F -0.16 -1.23 17.27 44.97 0.78 -0.45 16 25 C -0.16 -0.09 8.61 22.31 0.19 0.10 16 26 C -0.15 0.65 7.25 31.12 0.23 0.87 16 27 C -0.21 -0.53 9.04 22.37 0.20 -0.33 16 28 C -0.08 -0.10 8.66 22.25 0.19 0.09 16 29 H 0.39 -0.74 8.70 -74.06 -0.64 -1.38 16 30 H 0.13 -0.22 7.96 -2.39 -0.02 -0.24 16 31 H -0.30 -2.10 7.11 99.48 0.71 -1.39 16 32 H -0.29 -1.02 7.01 99.48 0.70 -0.32 16 33 H 0.14 -0.08 8.06 -2.91 -0.02 -0.11 16 34 H 0.14 -0.06 8.06 -2.91 -0.02 -0.09 16 35 H 0.06 0.08 7.61 -2.39 -0.02 0.06 16 36 H 0.07 0.05 7.63 -2.39 -0.02 0.04 16 37 H 0.13 -1.32 8.14 -2.38 -0.02 -1.34 16 38 H 0.13 -1.27 8.14 -2.39 -0.02 -1.29 16 39 H 0.42 -5.61 8.70 -92.71 -0.81 -6.42 16 40 H 0.09 -0.54 7.73 -2.39 -0.02 -0.56 16 41 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 42 H 0.16 -1.59 8.05 -2.91 -0.02 -1.61 16 43 H 0.16 -1.28 8.06 -2.91 -0.02 -1.30 16 44 H 0.14 -0.20 8.06 -2.91 -0.02 -0.23 16 45 H 0.14 -0.11 6.65 -2.91 -0.02 -0.13 16 46 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 47 H 0.09 -0.26 6.31 -2.39 -0.02 -0.28 16 48 H 0.14 0.13 6.30 -2.91 -0.02 0.11 16 49 H 0.14 -0.27 4.83 -2.91 -0.01 -0.29 16 Total: 0.00 -21.36 409.74 0.95 -20.41 By element: Atomic # 1 Polarization: -19.00 SS G_CDS: -0.42 Total: -19.42 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 3.76 Total: 5.75 kcal Atomic # 7 Polarization: 4.64 SS G_CDS: -2.32 Total: 2.32 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -2.90 Total: -10.26 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.78 Total: -0.45 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: 2.05 Total: 1.64 kcal Total: -21.36 0.95 -20.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.825 kcal (2) G-P(sol) polarization free energy of solvation -21.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds