Wall clock time and date at job start Tue Mar 9 2021 13:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35993 * 117.00126 * 2 1 4 4 C 1.39157 * 120.07399 * 180.02562 * 3 2 1 5 5 O 1.35987 * 120.07242 * 359.97438 * 4 3 2 6 6 C 1.42905 * 117.00096 * 179.72822 * 5 4 3 7 7 C 1.50703 * 109.47264 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99926 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99773 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99642 * 180.02562 * 9 7 6 11 11 H 1.08997 * 112.85493 * 23.80823 * 10 9 7 12 12 C 1.53787 * 113.61142 * 155.00452 * 10 9 7 13 13 C 1.53777 * 87.08212 * 89.11526 * 12 10 9 14 14 H 1.08998 * 113.61515 * 270.80014 * 13 12 10 15 15 C 1.50700 * 113.61248 * 139.97835 * 13 12 10 16 16 C 1.38177 * 119.99015 * 299.72524 * 15 13 12 17 17 C 1.38482 * 119.97143 * 179.73090 * 16 15 13 18 18 F 1.35097 * 120.02239 * 180.25489 * 17 16 15 19 19 C 1.38441 * 119.94998 * 0.53981 * 17 16 15 20 20 C 1.38218 * 119.97608 * 359.73572 * 19 17 16 21 21 C 1.38221 * 120.02181 * 359.97438 * 20 19 17 22 22 C 1.53782 * 87.08480 * 25.43349 * 13 12 10 23 23 C 1.38565 * 119.85095 * 179.72756 * 4 3 2 24 24 C 1.38243 * 120.00269 * 0.27178 * 23 4 3 25 25 N 1.48001 * 119.92780 * 180.02562 * 24 23 4 26 26 O 1.21803 * 120.00031 * 359.97438 * 25 24 23 27 27 O 1.21796 * 120.00286 * 180.02562 * 25 24 23 28 28 C 1.38248 * 120.14257 * 0.02562 * 24 23 4 29 29 C 1.50710 * 119.92339 * 179.97438 * 28 24 23 30 30 O 1.42903 * 109.47071 * 75.00218 * 29 28 24 31 31 Si 1.86299 * 109.47092 * 194.99958 * 29 28 24 32 32 C 1.38244 * 120.15273 * 359.97438 * 28 24 23 33 33 H 1.09001 * 109.46857 * 299.99606 * 1 2 3 34 34 H 1.08997 * 109.47349 * 60.00194 * 1 2 3 35 35 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 36 36 H 1.09001 * 109.47103 * 300.00410 * 6 5 4 37 37 H 1.09004 * 109.47054 * 59.99914 * 6 5 4 38 38 H 0.96998 * 120.00166 * 0.02562 * 9 7 6 39 39 H 1.09006 * 113.60887 * 203.66279 * 12 10 9 40 40 H 1.08989 * 113.61218 * 334.47962 * 12 10 9 41 41 H 1.07995 * 120.01256 * 0.02562 * 16 15 13 42 42 H 1.08006 * 120.01037 * 179.70545 * 19 17 16 43 43 H 1.07997 * 119.98961 * 180.02562 * 20 19 17 44 44 H 1.08004 * 119.97352 * 179.97438 * 21 20 19 45 45 H 1.08998 * 113.61393 * 220.01916 * 22 13 12 46 46 H 1.08998 * 113.61762 * 89.11486 * 22 13 12 47 47 H 1.08006 * 119.99818 * 180.25279 * 23 4 3 48 48 H 1.08993 * 109.47133 * 315.00136 * 29 28 24 49 49 H 0.96698 * 113.99639 * 179.97438 * 30 29 28 50 50 H 1.48504 * 109.99984 * 300.00414 * 31 29 28 51 51 H 1.48504 * 110.00034 * 61.31810 * 31 29 28 52 52 H 1.08001 * 120.00502 * 180.02562 * 32 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1795 0.1477 -0.0005 6 6 5.6003 0.3006 -0.0071 7 6 6.2519 -1.0583 -0.0055 8 8 5.5670 -2.0591 0.0003 9 7 7.5957 -1.1612 -0.0115 10 6 8.2290 -2.4822 -0.0104 11 1 7.5816 -3.2624 -0.4105 12 6 9.6442 -2.4873 -0.6124 13 6 10.1621 -2.1790 0.8023 14 1 10.2206 -1.1133 1.0233 15 6 11.4249 -2.9206 1.1578 16 6 11.4358 -4.3023 1.1646 17 6 12.5979 -4.9834 1.4858 18 9 12.6111 -6.3343 1.4878 19 6 13.7446 -4.2790 1.8107 20 6 13.7298 -2.8969 1.8088 21 6 12.5709 -2.2181 1.4821 22 6 8.8838 -2.8504 1.3316 23 6 4.0603 2.5233 -0.0063 24 6 3.3029 3.6798 -0.0057 25 7 3.9714 5.0003 -0.0124 26 8 5.1876 5.0671 -0.0179 27 8 3.3055 6.0201 -0.0115 28 6 1.9224 3.6057 0.0010 29 6 1.1016 4.8696 0.0022 30 8 1.1284 5.4561 -1.3007 31 14 -0.6573 4.4674 0.4661 32 6 1.2932 2.3748 0.0068 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 -0.3633 -1.0277 0.0005 36 1 5.9027 0.8479 -0.9000 37 1 5.9104 0.8529 0.8800 38 1 8.1434 -0.3607 -0.0164 39 1 9.9551 -3.4620 -0.9885 40 1 9.8174 -1.6829 -1.3272 41 1 10.5396 -4.8508 0.9148 42 1 14.6502 -4.8092 2.0661 43 1 14.6242 -2.3471 2.0618 44 1 12.5601 -1.1381 1.4813 45 1 8.4437 -2.3382 2.1872 46 1 8.9869 -3.9243 1.4870 47 1 5.1386 2.5840 -0.0108 48 1 1.5166 5.5717 0.7252 49 1 0.6193 6.2750 -1.3739 50 1 -1.2345 3.5109 -0.5123 51 1 -0.7021 3.8861 1.8318 52 1 0.2146 2.3196 0.0116 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_4549636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:44 Heat of formation + Delta-G solvation = -80.406700 kcal Electronic energy + Delta-G solvation = -41266.931935 eV Core-core repulsion = 35504.975832 eV Total energy + Delta-G solvation = -5761.956103 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 433.151 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -49.95074 -43.45743 -42.23879 -41.65402 -40.63116 -39.75108 -39.19171 -38.61362 -37.78804 -37.13098 -34.78641 -32.87012 -32.70562 -31.96471 -31.49533 -29.86564 -28.96679 -27.97237 -26.75591 -26.37493 -25.74375 -24.16085 -23.73054 -23.20262 -22.75804 -22.07251 -20.83436 -20.31719 -19.91205 -19.59105 -18.89388 -18.88465 -18.47526 -18.26229 -18.08591 -17.83509 -17.71175 -17.28751 -17.06650 -17.02623 -16.90599 -16.65629 -16.57221 -16.05005 -15.86586 -15.61577 -15.46384 -15.34372 -14.90876 -14.79513 -14.69929 -14.34889 -14.24462 -14.11650 -13.96268 -13.90434 -13.58832 -13.50367 -13.03808 -12.99242 -12.95202 -12.71749 -12.68509 -12.52870 -12.48326 -12.44411 -12.39569 -12.21318 -11.99345 -11.92207 -11.73999 -11.25529 -11.15485 -10.63308 -10.24648 -10.24066 -9.90633 -9.63109 -9.61724 -5.01226 -1.39850 -0.57389 0.11220 0.15462 0.21451 0.23097 1.14094 1.14778 1.32244 1.56772 1.70201 1.77203 1.80164 2.24337 2.55935 2.81667 3.03338 3.19306 3.20608 3.32616 3.42735 3.44373 3.60266 3.64384 3.72447 3.76530 3.80047 3.80216 3.89017 3.92642 3.94484 3.98849 4.04922 4.06558 4.10454 4.21964 4.22361 4.26693 4.40711 4.49773 4.56947 4.58407 4.60461 4.72224 4.78094 4.84751 4.91528 4.97864 5.08132 5.09994 5.16569 5.23247 5.34218 5.41338 5.47190 5.59512 5.89026 5.92684 6.34399 6.50501 6.83988 7.03372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.305 6.305 3 C 0.162 3.838 4 C 0.104 3.896 5 O -0.291 6.291 6 C 0.025 3.975 7 C 0.519 3.481 8 O -0.567 6.567 9 N -0.689 5.689 10 C 0.116 3.884 11 H 0.083 0.917 12 C -0.124 4.124 13 C -0.064 4.064 14 H 0.128 0.872 15 C -0.046 4.046 16 C -0.161 4.161 17 C 0.071 3.929 18 F -0.156 7.156 19 C -0.169 4.169 20 C -0.091 4.091 21 C -0.124 4.124 22 C -0.146 4.146 23 C -0.106 4.106 24 C -0.043 4.043 25 N 0.037 4.963 26 O -0.190 6.190 27 O -0.142 6.142 28 C -0.005 4.005 29 C -0.100 4.100 30 O -0.553 6.553 31 Si 0.777 3.223 32 C -0.188 4.188 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.423 0.577 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.193 0.807 48 H 0.101 0.899 49 H 0.408 0.592 50 H -0.269 1.269 51 H -0.277 1.277 52 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 5.582 0.800 5.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.217 6.217 3 C 0.114 3.886 4 C 0.057 3.943 5 O -0.203 6.203 6 C -0.053 4.053 7 C 0.305 3.695 8 O -0.444 6.444 9 N -0.343 5.343 10 C 0.010 3.990 11 H 0.101 0.899 12 C -0.162 4.162 13 C -0.082 4.082 14 H 0.146 0.854 15 C -0.046 4.046 16 C -0.180 4.180 17 C 0.052 3.948 18 F -0.135 7.135 19 C -0.188 4.188 20 C -0.108 4.108 21 C -0.142 4.142 22 C -0.184 4.184 23 C -0.125 4.125 24 C -0.127 4.127 25 N 0.553 4.447 26 O -0.397 6.397 27 O -0.361 6.361 28 C -0.007 4.007 29 C -0.208 4.208 30 O -0.363 6.363 31 Si 0.679 3.321 32 C -0.206 4.206 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.262 0.738 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.173 0.827 44 H 0.173 0.827 45 H 0.092 0.908 46 H 0.108 0.892 47 H 0.210 0.790 48 H 0.119 0.881 49 H 0.260 0.740 50 H -0.195 1.195 51 H -0.203 1.203 52 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.089 2.622 0.900 3.471 hybrid contribution 1.047 -0.031 0.068 1.050 sum -1.042 2.591 0.968 2.955 Atomic orbital electron populations 1.23670 0.75321 1.07116 1.02854 1.86311 1.24198 1.24643 1.86512 1.18675 0.89649 0.85961 0.94332 1.17864 0.88296 0.85507 1.02666 1.86300 1.18782 1.26586 1.88666 1.22977 0.78463 0.96164 1.07646 1.20298 0.83076 0.90344 0.75767 1.90791 1.63975 1.39873 1.49799 1.45299 1.04947 1.09731 1.74360 1.21847 0.94240 0.85145 0.97728 0.89894 1.23373 0.92227 1.04343 0.96274 1.21685 0.89525 1.00514 0.96435 0.85419 1.19713 0.96020 0.91884 0.97020 1.21137 0.97314 0.95470 1.04033 1.18068 0.96422 0.76488 1.03856 1.91473 1.97300 1.30275 1.94451 1.21428 0.97735 0.96063 1.03579 1.21372 0.99707 0.92700 0.97052 1.21511 0.91861 1.01758 0.99092 1.23571 0.95561 1.01850 0.97453 1.20979 1.03290 0.87857 1.00400 1.20535 0.92356 0.82822 1.16985 1.43434 1.00863 1.02964 0.97469 1.94519 0.96114 1.93928 1.55171 1.94481 1.64640 1.24815 1.52206 1.19318 0.90943 0.96113 0.94286 1.25214 1.10956 0.93421 0.91194 1.86384 1.77600 1.45492 1.26870 0.93543 0.75816 0.85905 0.76880 1.21045 1.01292 0.89566 1.08740 0.90907 0.90916 0.85095 0.85099 0.84949 0.73816 0.88639 0.88469 0.84509 0.84179 0.82667 0.82656 0.90790 0.89174 0.79032 0.88103 0.73959 1.19536 1.20347 0.81469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -1.62 10.28 -79.60 -0.82 -2.44 16 3 C 0.16 0.74 6.70 22.57 0.15 0.89 16 4 C 0.10 0.38 6.70 22.57 0.15 0.53 16 5 O -0.29 -1.48 9.45 -66.99 -0.63 -2.11 16 6 C 0.02 -0.10 5.22 71.24 0.37 0.27 16 7 C 0.52 0.70 7.91 87.66 0.69 1.39 16 8 O -0.57 -7.52 16.10 16.01 0.26 -7.26 16 9 N -0.69 4.08 5.26 -440.03 -2.32 1.76 16 10 C 0.12 -0.39 4.32 45.52 0.20 -0.19 16 11 H 0.08 0.20 7.46 -2.39 -0.02 0.19 16 12 C -0.12 0.89 7.29 31.12 0.23 1.12 16 13 C -0.06 0.47 3.86 -11.01 -0.04 0.43 16 14 H 0.13 -1.54 8.09 -2.39 -0.02 -1.56 16 15 C -0.05 0.15 5.29 -19.87 -0.11 0.04 16 16 C -0.16 -0.15 8.60 22.31 0.19 0.04 16 17 C 0.07 0.31 7.30 22.38 0.16 0.47 16 18 F -0.16 -1.30 17.27 44.97 0.78 -0.52 16 19 C -0.17 -0.17 10.03 22.31 0.22 0.05 16 20 C -0.09 0.28 10.04 22.26 0.22 0.50 16 21 C -0.12 0.58 9.71 22.27 0.22 0.79 16 22 C -0.15 0.56 7.25 31.12 0.23 0.79 16 23 C -0.11 -0.12 8.54 22.35 0.19 0.08 16 24 C -0.04 -0.22 6.85 36.38 0.25 0.03 16 25 N 0.04 0.31 4.45 -46.47 -0.21 0.10 16 26 O -0.19 -1.72 18.44 18.88 0.35 -1.37 16 27 O -0.14 -1.26 14.62 25.11 0.37 -0.89 16 28 C 0.00 -0.02 5.29 -19.86 -0.11 -0.12 16 29 C -0.10 0.03 1.73 71.24 0.12 0.16 16 30 O -0.55 -0.12 11.77 -129.62 -1.53 -1.65 16 31 Si 0.78 -4.11 30.19 68.60 2.07 -2.04 16 32 C -0.19 -0.46 7.65 22.35 0.17 -0.29 16 33 H 0.07 -0.40 7.65 -2.39 -0.02 -0.42 16 34 H 0.07 -0.35 7.68 -2.39 -0.02 -0.37 16 35 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 36 H 0.13 -1.36 7.66 -2.39 -0.02 -1.37 16 37 H 0.13 -1.43 7.66 -2.38 -0.02 -1.45 16 38 H 0.42 -5.81 8.70 -92.71 -0.81 -6.62 16 39 H 0.10 -0.53 7.73 -2.38 -0.02 -0.55 16 40 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 41 H 0.14 -0.05 6.64 -2.91 -0.02 -0.07 16 42 H 0.14 -0.15 8.06 -2.91 -0.02 -0.18 16 43 H 0.16 -1.23 8.06 -2.91 -0.02 -1.25 16 44 H 0.16 -1.56 8.05 -2.91 -0.02 -1.59 16 45 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 46 H 0.09 -0.21 6.30 -2.39 -0.02 -0.22 16 47 H 0.19 -0.98 5.85 -2.91 -0.02 -1.00 16 48 H 0.10 -0.08 6.07 -2.39 -0.01 -0.09 16 49 H 0.41 -4.01 8.74 -74.06 -0.65 -4.66 16 50 H -0.27 0.49 6.74 99.48 0.67 1.16 16 51 H -0.28 0.22 7.11 99.48 0.71 0.93 16 52 H 0.17 -0.14 3.13 -2.91 -0.01 -0.14 16 Total: 0.00 -32.21 439.75 2.54 -29.67 By element: Atomic # 1 Polarization: -20.91 SS G_CDS: -0.41 Total: -21.32 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 4.63 Total: 8.08 kcal Atomic # 7 Polarization: 4.39 SS G_CDS: -2.52 Total: 1.86 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -2.00 Total: -15.73 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.78 Total: -0.52 kcal Atomic # 14 Polarization: -4.11 SS G_CDS: 2.07 Total: -2.04 kcal Total: -32.21 2.54 -29.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_4549636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.739 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds