Wall clock time and date at job start Tue Mar 9 2021 13:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33818 * 122.44912 * 2 1 4 4 C 1.50698 * 124.52599 * 359.95131 * 3 2 1 5 5 O 1.42898 * 109.46895 * 330.00206 * 4 3 2 6 6 Si 1.86293 * 109.47494 * 210.00091 * 4 3 2 7 7 S 1.70618 * 110.95633 * 179.97438 * 3 2 1 8 8 C 1.75835 * 91.56146 * 359.97438 * 7 3 2 9 9 C 1.46579 * 125.45775 * 180.02562 * 8 7 3 10 10 O 1.21706 * 120.00068 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00386 * 0.02562 * 9 8 7 12 12 C 1.46498 * 120.00201 * 180.02562 * 11 9 8 13 13 H 1.08994 * 112.85292 * 336.20243 * 12 11 9 14 14 C 1.53786 * 113.61080 * 107.50817 * 12 11 9 15 15 C 1.53783 * 87.08017 * 89.11672 * 14 12 11 16 16 H 1.08996 * 113.61427 * 270.88021 * 15 14 12 17 17 C 1.50706 * 113.61306 * 139.98114 * 15 14 12 18 18 C 1.38180 * 119.98543 * 142.50325 * 17 15 14 19 19 C 1.38478 * 119.97424 * 179.97438 * 18 17 15 20 20 F 1.35097 * 120.02491 * 180.02562 * 19 18 17 21 21 C 1.38440 * 119.94657 * 359.97438 * 19 18 17 22 22 C 1.38216 * 119.97585 * 0.02562 * 21 19 18 23 23 C 1.38225 * 120.02548 * 359.74859 * 22 21 19 24 24 C 1.53780 * 87.08369 * 25.43143 * 15 14 12 25 25 C 1.36646 * 109.08337 * 359.97438 * 8 7 3 26 26 H 1.09007 * 109.46743 * 89.99889 * 1 2 3 27 27 H 1.09000 * 109.47343 * 210.00241 * 1 2 3 28 28 H 1.09004 * 109.47040 * 330.00900 * 1 2 3 29 29 H 1.09001 * 109.47096 * 89.99676 * 4 3 2 30 30 H 0.96697 * 113.99967 * 299.99976 * 5 4 3 31 31 H 1.48501 * 110.00273 * 179.97438 * 6 4 3 32 32 H 1.48502 * 110.00226 * 301.31826 * 6 4 3 33 33 H 0.96998 * 119.99656 * 0.02562 * 11 9 8 34 34 H 1.09001 * 113.61261 * 203.66564 * 14 12 11 35 35 H 1.08994 * 113.61678 * 334.56647 * 14 12 11 36 36 H 1.08001 * 120.00887 * 359.97438 * 18 17 15 37 37 H 1.08004 * 120.01062 * 180.02562 * 21 19 18 38 38 H 1.08006 * 119.99055 * 180.02562 * 22 21 19 39 39 H 1.08001 * 119.97702 * 180.25754 * 23 22 21 40 40 H 1.09000 * 113.61554 * 220.01873 * 24 15 14 41 41 H 1.09004 * 113.61418 * 89.11511 * 24 15 14 42 42 H 1.07998 * 123.35444 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5162 -0.0011 5 8 0.3759 2.4978 -0.6755 6 14 2.7931 3.6823 -0.8790 7 16 3.8969 0.7893 0.0007 8 6 3.5937 -0.9427 0.0018 9 6 4.6231 -1.9862 0.0033 10 8 4.3001 -3.1596 0.0035 11 7 5.9273 -1.6463 0.0046 12 6 6.9561 -2.6892 0.0055 13 1 6.5987 -3.6360 0.4105 14 6 7.6917 -2.8300 -1.3376 15 6 8.6832 -1.7769 -0.8153 16 1 8.3899 -0.7516 -1.0404 17 6 10.1178 -2.0687 -1.1731 18 6 10.9713 -1.0336 -1.5040 19 6 12.2896 -1.3019 -1.8322 20 9 13.1250 -0.2906 -2.1555 21 6 12.7510 -2.6071 -1.8278 22 6 11.8955 -3.6409 -1.4964 23 6 10.5810 -3.3714 -1.1644 24 6 8.2973 -2.2310 0.6023 25 6 2.2446 -1.1600 0.0021 26 1 -0.3633 0.0000 -1.0278 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5137 29 1 1.4926 2.8510 1.0264 30 1 0.4273 2.2089 -1.5969 31 1 2.2229 5.0535 -0.8874 32 1 4.1169 3.6864 -0.2060 33 1 6.1847 -0.7111 0.0048 34 1 8.1383 -3.8126 -1.4899 35 1 7.1069 -2.4926 -2.1933 36 1 10.6102 -0.0157 -1.5068 37 1 13.7791 -2.8175 -2.0831 38 1 12.2553 -4.6592 -1.4924 39 1 9.9143 -4.1794 -0.9016 40 1 8.2013 -1.4099 1.3128 41 1 8.9095 -3.0498 0.9804 42 1 1.8019 -2.1451 0.0024 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705262_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:37 Heat of formation + Delta-G solvation = -23.528883 kcal Electronic energy + Delta-G solvation = -26734.518096 eV Core-core repulsion = 22688.099085 eV Total energy + Delta-G solvation = -4046.419011 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.92656 -41.66198 -40.54214 -39.80136 -38.65698 -37.26957 -34.72873 -32.41697 -31.85983 -31.16288 -30.20707 -27.16462 -26.71783 -25.80681 -24.49658 -23.74697 -22.74066 -21.99653 -20.47592 -19.98369 -19.50469 -18.39110 -17.68861 -17.39916 -17.27443 -17.06474 -16.92828 -16.63401 -16.45857 -16.12063 -15.99150 -15.63428 -15.40863 -14.97373 -14.61024 -14.56901 -14.45518 -14.15440 -13.95647 -13.87239 -13.51177 -13.47506 -13.10011 -13.05430 -12.91718 -12.81428 -12.72801 -12.44078 -12.25120 -11.80706 -11.76889 -11.72704 -11.31548 -11.26043 -10.67274 -10.26181 -9.90454 -9.69036 -9.60788 -9.42879 -5.07109 -0.68507 0.15789 0.24016 0.26206 0.68441 1.10538 1.31726 1.53540 1.89245 1.92465 2.03788 2.57048 3.22728 3.36583 3.40556 3.58113 3.64220 3.66256 3.73052 3.86411 3.95451 4.08163 4.10036 4.15162 4.25178 4.26145 4.42245 4.44581 4.58290 4.61772 4.75811 4.77123 4.84990 4.86892 4.91900 4.92997 5.00867 5.02370 5.08708 5.12259 5.18075 5.37557 5.39414 5.43994 5.48413 5.61116 5.93610 6.29456 6.66751 6.98339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.099 4.099 3 C -0.234 4.234 4 C -0.030 4.030 5 O -0.539 6.539 6 Si 0.728 3.272 7 S 0.234 5.766 8 C -0.283 4.283 9 C 0.593 3.407 10 O -0.567 6.567 11 N -0.698 5.698 12 C 0.113 3.887 13 H 0.094 0.906 14 C -0.139 4.139 15 C -0.070 4.070 16 H 0.110 0.890 17 C -0.044 4.044 18 C -0.159 4.159 19 C 0.072 3.928 20 F -0.155 7.155 21 C -0.169 4.169 22 C -0.089 4.089 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.054 4.054 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.396 0.604 31 H -0.274 1.274 32 H -0.253 1.253 33 H 0.409 0.591 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.322 1.288 -1.419 1.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.354 4.354 4 C -0.143 4.143 5 O -0.347 6.347 6 Si 0.630 3.370 7 S 0.502 5.498 8 C -0.403 4.403 9 C 0.381 3.619 10 O -0.448 6.448 11 N -0.349 5.349 12 C 0.008 3.992 13 H 0.112 0.888 14 C -0.177 4.177 15 C -0.088 4.088 16 H 0.128 0.872 17 C -0.044 4.044 18 C -0.178 4.178 19 C 0.053 3.947 20 F -0.134 7.134 21 C -0.188 4.188 22 C -0.107 4.107 23 C -0.146 4.146 24 C -0.163 4.163 25 C -0.088 4.088 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.139 0.861 30 H 0.246 0.754 31 H -0.200 1.200 32 H -0.179 1.179 33 H 0.246 0.754 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.104 0.896 41 H 0.128 0.872 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.776 2.336 -0.794 3.040 hybrid contribution -1.081 -0.505 0.425 1.267 sum 0.694 1.831 -0.369 1.993 Atomic orbital electron populations 1.20629 0.87885 1.02976 1.03574 1.18775 0.98990 0.90248 1.03164 1.24673 0.98720 1.01219 1.10742 1.24586 0.92622 0.94804 1.02277 1.86508 1.27580 1.90063 1.30573 0.93990 0.76003 0.77829 0.89153 1.82815 1.02705 0.96061 1.68184 1.24534 0.97740 0.98207 1.19785 1.17145 0.82383 0.87084 0.75317 1.90833 1.82269 1.19910 1.51782 1.45462 1.04386 1.10553 1.74513 1.21949 0.87269 0.91832 0.98162 0.88774 1.23578 0.96694 1.00392 0.97076 1.21646 0.89533 1.00662 0.96969 0.87193 1.19664 0.95259 0.92620 0.96842 1.21224 0.91815 1.01474 1.03245 1.18059 0.88947 0.85102 1.02543 1.91475 1.71527 1.59779 1.90577 1.21422 1.02283 0.91182 1.03875 1.21336 0.93171 0.99786 0.96404 1.21401 0.96187 0.96818 1.00194 1.23420 0.94162 1.02842 0.95831 1.20815 0.91260 1.00373 0.96383 0.89687 0.92129 0.90195 0.86071 0.75371 1.20001 1.17901 0.75384 0.87522 0.91100 0.83998 0.84100 0.82756 0.83232 0.89560 0.87214 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.19 8.67 71.23 0.62 0.81 16 2 C -0.10 0.00 5.75 -21.05 -0.12 -0.12 16 3 C -0.23 0.50 5.53 24.68 0.14 0.63 16 4 C -0.03 0.12 2.76 71.24 0.20 0.32 16 5 O -0.54 2.24 9.86 -148.98 -1.47 0.77 16 6 Si 0.73 -3.76 31.32 68.60 2.15 -1.61 16 7 S 0.23 -0.71 19.78 -56.49 -1.12 -1.82 16 8 C -0.28 -0.71 6.45 24.07 0.16 -0.55 16 9 C 0.59 3.20 7.78 86.42 0.67 3.87 16 10 O -0.57 -7.61 16.44 -4.37 -0.07 -7.68 16 11 N -0.70 0.84 5.26 -444.08 -2.33 -1.50 16 12 C 0.11 -0.27 4.33 45.52 0.20 -0.08 16 13 H 0.09 0.13 7.46 -2.39 -0.02 0.11 16 14 C -0.14 0.59 7.25 31.12 0.23 0.82 16 15 C -0.07 0.41 3.86 -11.01 -0.04 0.36 16 16 H 0.11 -0.84 8.09 -2.39 -0.02 -0.86 16 17 C -0.04 0.11 5.29 -19.87 -0.11 0.01 16 18 C -0.16 -0.07 9.69 22.31 0.22 0.15 16 19 C 0.07 0.27 7.30 22.38 0.16 0.43 16 20 F -0.15 -1.13 17.27 44.97 0.78 -0.36 16 21 C -0.17 -0.14 10.03 22.31 0.22 0.08 16 22 C -0.09 0.24 10.04 22.26 0.22 0.46 16 23 C -0.13 0.47 8.59 22.27 0.19 0.66 16 24 C -0.12 0.80 7.29 31.12 0.23 1.02 16 25 C -0.05 -0.16 9.80 21.72 0.21 0.05 16 26 H 0.08 -0.40 8.14 -2.38 -0.02 -0.42 16 27 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 28 H 0.08 -0.06 6.42 -2.38 -0.02 -0.08 16 29 H 0.12 -0.40 7.96 -2.39 -0.02 -0.42 16 30 H 0.40 -4.40 8.66 -74.06 -0.64 -5.04 16 31 H -0.27 -0.47 7.11 99.48 0.71 0.24 16 32 H -0.25 0.61 7.09 99.48 0.71 1.31 16 33 H 0.41 -2.42 7.81 -92.71 -0.72 -3.15 16 34 H 0.11 -0.61 6.32 -2.39 -0.02 -0.63 16 35 H 0.07 -0.17 8.14 -2.39 -0.02 -0.18 16 36 H 0.14 -0.31 8.06 -2.91 -0.02 -0.33 16 37 H 0.14 -0.20 8.06 -2.91 -0.02 -0.22 16 38 H 0.15 -1.13 8.06 -2.91 -0.02 -1.15 16 39 H 0.15 -1.16 6.67 -2.91 -0.02 -1.18 16 40 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 41 H 0.11 -0.82 7.71 -2.39 -0.02 -0.83 16 42 H 0.15 0.58 8.06 -2.91 -0.02 0.56 16 Total: 0.00 -17.40 366.44 1.07 -16.33 By element: Atomic # 1 Polarization: -12.80 SS G_CDS: -0.25 Total: -13.05 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 3.39 Total: 8.93 kcal Atomic # 7 Polarization: 0.84 SS G_CDS: -2.33 Total: -1.50 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -1.54 Total: -6.92 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.78 Total: -0.36 kcal Atomic # 14 Polarization: -3.76 SS G_CDS: 2.15 Total: -1.61 kcal Atomic # 16 Polarization: -0.71 SS G_CDS: -1.12 Total: -1.82 kcal Total: -17.40 1.07 -16.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705262_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.202 kcal (2) G-P(sol) polarization free energy of solvation -17.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds