Wall clock time and date at job start Tue Mar 9 2021 13:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35658 * 117.00276 * 2 1 4 4 C 1.38404 * 120.11830 * 359.72984 * 3 2 1 5 5 C 1.38726 * 120.03017 * 179.72140 * 4 3 2 6 6 O 1.35716 * 119.86036 * 180.29917 * 5 4 3 7 7 C 1.42897 * 117.00302 * 0.25186 * 6 5 4 8 8 C 1.39144 * 120.27165 * 0.55188 * 5 4 3 9 9 C 1.50698 * 119.87713 * 179.70159 * 8 5 4 10 10 O 1.42905 * 109.46926 * 75.02410 * 9 8 5 11 11 Si 1.86307 * 109.47106 * 195.02077 * 9 8 5 12 12 C 1.37581 * 120.24338 * 359.72528 * 8 5 4 13 13 C 1.39818 * 119.96185 * 359.97438 * 12 8 5 14 14 C 1.47304 * 120.13754 * 179.97438 * 13 12 8 15 15 O 1.21619 * 120.00148 * 180.02562 * 14 13 12 16 16 N 1.34777 * 119.99633 * 0.02562 * 14 13 12 17 17 C 1.46499 * 119.99877 * 180.02562 * 16 14 13 18 18 H 1.09003 * 112.85301 * 336.20001 * 17 16 14 19 19 C 1.53779 * 113.61219 * 107.50943 * 17 16 14 20 20 C 1.53780 * 87.08577 * 89.11622 * 19 17 16 21 21 H 1.09000 * 113.69003 * 270.87620 * 20 19 17 22 22 C 1.50695 * 113.61467 * 139.98116 * 20 19 17 23 23 C 1.38216 * 119.99996 * 142.23419 * 22 20 19 24 24 C 1.38261 * 120.00029 * 179.74256 * 23 22 20 25 25 C 1.50701 * 119.99737 * 180.29170 * 24 23 22 26 26 F 1.39901 * 109.46850 * 180.23060 * 25 24 23 27 27 F 1.39897 * 109.47123 * 300.23190 * 25 24 23 28 28 F 1.39904 * 109.47059 * 60.23417 * 25 24 23 29 29 C 1.38203 * 119.99907 * 0.52744 * 24 23 22 30 30 C 1.38265 * 120.00030 * 359.74144 * 29 24 23 31 31 C 1.38210 * 119.99788 * 359.97438 * 30 29 24 32 32 C 1.53778 * 113.61544 * 205.00217 * 17 16 14 33 33 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46938 * 59.99682 * 1 2 3 35 35 H 1.09004 * 109.46926 * 299.99803 * 1 2 3 36 36 H 1.08006 * 119.98354 * 359.97188 * 4 3 2 37 37 H 1.08998 * 109.47075 * 300.00186 * 7 6 5 38 38 H 1.09003 * 109.47133 * 60.00121 * 7 6 5 39 39 H 1.08993 * 109.46811 * 179.97438 * 7 6 5 40 40 H 1.08991 * 109.47343 * 315.02573 * 9 8 5 41 41 H 0.96700 * 113.99398 * 179.97438 * 10 9 8 42 42 H 1.48497 * 110.00108 * 178.68341 * 11 9 8 43 43 H 1.48503 * 109.99687 * 300.00228 * 11 9 8 44 44 H 1.07992 * 120.02098 * 179.97438 * 12 8 5 45 45 H 0.97003 * 120.00479 * 0.02562 * 16 14 13 46 46 H 1.08998 * 113.61550 * 203.66797 * 19 17 16 47 47 H 1.09005 * 113.61915 * 334.56181 * 19 17 16 48 48 H 1.08003 * 119.99625 * 359.97438 * 23 22 20 49 49 H 1.07995 * 120.00114 * 179.77016 * 29 24 23 50 50 H 1.08001 * 119.99480 * 180.02562 * 30 29 24 51 51 H 1.07997 * 119.99706 * 179.97438 * 31 30 29 52 52 H 1.09001 * 113.61277 * 25.43582 * 32 17 16 53 53 H 1.09001 * 113.61891 * 156.33723 * 32 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2936 2.3710 -0.0056 5 6 1.9253 3.6061 0.0002 6 8 1.1852 4.7437 0.0008 7 6 -0.2358 4.5931 0.0008 8 6 3.3146 3.6833 0.0002 9 6 3.9916 5.0297 -0.0002 10 8 3.8945 5.6121 1.3011 11 14 5.7863 4.8222 -0.4554 12 6 4.0725 2.5351 0.0000 13 6 3.4462 1.2850 0.0005 14 6 4.2539 0.0532 -0.0002 15 8 3.7065 -1.0329 -0.0003 16 7 5.5995 0.1297 -0.0008 17 6 6.4028 -1.0955 -0.0020 18 1 5.8665 -1.9537 0.4029 19 6 7.0944 -1.3771 -1.3463 20 6 8.2746 -0.5404 -0.8249 21 1 8.1900 0.5231 -1.0484 22 6 9.6231 -1.1086 -1.1851 23 6 10.6621 -0.2618 -1.5223 24 6 11.9008 -0.7828 -1.8475 25 6 13.0355 0.1408 -2.2088 26 9 14.1763 -0.6143 -2.5014 27 9 12.6797 0.9010 -3.3280 28 9 13.3039 0.9931 -1.1322 29 6 12.0970 -2.1509 -1.8460 30 6 11.0561 -2.9982 -1.5141 31 6 9.8195 -2.4771 -1.1833 32 6 7.8087 -0.9109 0.5930 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5139 -0.8900 35 1 -0.3633 0.5138 0.8900 36 1 0.2150 2.3165 -0.0105 37 1 -0.5430 4.0443 -0.8894 38 1 -0.5430 4.0435 0.8905 39 1 -0.7053 5.5768 0.0017 40 1 3.5054 5.6806 -0.7267 41 1 4.3103 6.4820 1.3747 42 1 6.4577 6.1463 -0.4904 43 1 6.4605 3.9367 0.5277 44 1 5.1505 2.5992 -0.0004 45 1 6.0361 0.9959 -0.0003 46 1 7.3386 -2.4282 -1.5000 47 1 6.5863 -0.9304 -2.2010 48 1 10.5074 0.8071 -1.5281 49 1 13.0635 -2.5581 -2.1037 50 1 11.2096 -4.0673 -1.5126 51 1 9.0063 -3.1389 -0.9244 52 1 7.8772 -0.0876 1.3041 53 1 8.2482 -1.8345 0.9696 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_12297780.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:23 Heat of formation + Delta-G solvation = -192.370127 kcal Electronic energy + Delta-G solvation = -43125.175372 eV Core-core repulsion = 37094.935036 eV Total energy + Delta-G solvation = -6030.240336 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 438.153 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -51.21117 -48.74117 -48.68020 -42.13741 -41.44822 -40.41908 -39.90316 -38.80266 -38.36283 -37.14961 -34.67742 -32.86062 -32.40734 -32.27587 -31.33724 -28.97458 -28.21045 -27.12556 -26.60441 -26.39151 -26.03014 -24.59973 -23.42856 -23.02687 -22.30187 -21.57437 -20.39611 -19.93974 -19.53697 -19.41032 -19.01787 -18.63716 -18.54371 -18.09220 -17.33537 -17.29370 -17.08413 -16.84924 -16.53585 -16.41373 -16.29198 -16.06966 -15.77357 -15.66225 -15.60268 -15.55648 -15.47429 -15.32651 -15.12720 -14.96048 -14.84748 -14.71118 -14.51576 -14.37661 -14.21423 -14.07422 -13.86881 -13.75266 -13.72347 -13.48269 -13.38335 -13.17515 -12.86344 -12.78812 -12.53721 -12.50092 -12.36142 -12.13958 -11.90344 -11.82865 -11.71917 -11.62461 -11.21673 -10.94869 -10.41487 -10.18824 -10.08092 -9.91545 -9.76602 -9.19017 -4.93048 -0.25912 -0.05722 0.07555 0.26016 1.29124 1.58481 1.63370 1.71926 1.92597 2.07980 2.11667 2.18298 2.45878 2.58109 2.69967 2.97942 3.33057 3.37596 3.46658 3.53699 3.66932 3.68078 3.71047 3.77651 3.86727 3.87745 3.98875 4.09019 4.11078 4.13855 4.18173 4.24058 4.27728 4.28612 4.28960 4.31050 4.42201 4.44715 4.63994 4.67538 4.68202 4.70529 4.76784 4.81530 4.85911 4.92945 4.95598 4.99106 5.04827 5.09119 5.17477 5.21503 5.29428 5.35322 5.48428 5.67114 5.81156 6.03141 6.28598 6.51953 6.64032 7.24429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.303 6.303 3 C 0.219 3.781 4 C -0.311 4.311 5 C 0.214 3.786 6 O -0.312 6.312 7 C 0.012 3.988 8 C -0.163 4.163 9 C -0.074 4.074 10 O -0.555 6.555 11 Si 0.753 3.247 12 C 0.000 4.000 13 C -0.228 4.228 14 C 0.568 3.432 15 O -0.560 6.560 16 N -0.704 5.704 17 C 0.115 3.885 18 H 0.089 0.911 19 C -0.138 4.138 20 C -0.070 4.070 21 H 0.114 0.886 22 C -0.071 4.071 23 C -0.076 4.076 24 C -0.194 4.194 25 C 0.506 3.494 26 F -0.182 7.182 27 F -0.182 7.182 28 F -0.183 7.183 29 C -0.088 4.088 30 C -0.118 4.118 31 C -0.085 4.085 32 C -0.128 4.128 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.165 0.835 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.392 0.608 42 H -0.284 1.284 43 H -0.268 1.268 44 H 0.158 0.842 45 H 0.408 0.592 46 H 0.104 0.896 47 H 0.073 0.927 48 H 0.141 0.859 49 H 0.142 0.858 50 H 0.156 0.844 51 H 0.152 0.848 52 H 0.082 0.918 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.722 1.440 -1.732 4.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.213 6.213 3 C 0.169 3.831 4 C -0.330 4.330 5 C 0.166 3.834 6 O -0.224 6.224 7 C -0.082 4.082 8 C -0.164 4.164 9 C -0.182 4.182 10 O -0.365 6.365 11 Si 0.656 3.344 12 C -0.018 4.018 13 C -0.232 4.232 14 C 0.357 3.643 15 O -0.439 6.439 16 N -0.357 5.357 17 C 0.009 3.991 18 H 0.107 0.893 19 C -0.177 4.177 20 C -0.088 4.088 21 H 0.132 0.868 22 C -0.071 4.071 23 C -0.094 4.094 24 C -0.196 4.196 25 C 0.452 3.548 26 F -0.163 7.163 27 F -0.164 7.164 28 F -0.164 7.164 29 C -0.106 4.106 30 C -0.135 4.135 31 C -0.103 4.103 32 C -0.166 4.166 33 H 0.132 0.868 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.182 0.818 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.139 0.861 40 H 0.101 0.899 41 H 0.242 0.758 42 H -0.211 1.211 43 H -0.195 1.195 44 H 0.175 0.825 45 H 0.246 0.754 46 H 0.122 0.878 47 H 0.091 0.909 48 H 0.159 0.841 49 H 0.160 0.840 50 H 0.173 0.827 51 H 0.170 0.830 52 H 0.101 0.899 53 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.464 0.258 -1.374 3.736 hybrid contribution -0.280 1.650 0.756 1.836 sum -3.745 1.908 -0.618 4.248 Atomic orbital electron populations 1.23484 0.76497 1.05815 1.02651 1.86362 1.23218 1.25747 1.86008 1.18952 0.91022 0.84755 0.88334 1.21419 1.02065 0.90675 1.18842 1.18909 0.90826 0.85063 0.88607 1.86111 1.21099 1.28621 1.86522 1.23477 0.76205 1.05939 1.02616 1.18591 0.90434 0.94935 1.12423 1.24846 1.12396 0.93115 0.87825 1.86569 1.80800 1.38668 1.30482 0.94439 0.71536 0.80891 0.87527 1.20941 1.00103 0.89121 0.91632 1.19117 0.90914 0.93702 1.19448 1.17972 0.82430 0.88265 0.75607 1.90813 1.72252 1.30092 1.50779 1.45489 1.04991 1.09884 1.75298 1.21872 0.91405 0.87773 0.98015 0.89290 1.23566 0.95272 1.01601 0.97231 1.21655 0.89557 1.00829 0.96732 0.86803 1.19780 0.94994 0.93472 0.98882 1.20962 0.90850 1.01220 0.96334 1.19994 0.94120 0.94593 1.10868 1.18510 0.82447 0.79443 0.74373 1.93159 1.53787 1.75909 1.93475 1.93211 1.91784 1.77633 1.53729 1.93211 1.94643 1.72678 1.55915 1.21236 1.01108 0.91287 0.96983 1.21464 0.92224 1.01282 0.98579 1.21578 0.97874 0.94974 0.95862 1.23431 0.93210 1.03962 0.95971 0.86787 0.90798 0.91275 0.81765 0.90838 0.91694 0.86111 0.89905 0.75808 1.21078 1.19454 0.82464 0.75420 0.87767 0.90870 0.84116 0.84021 0.82675 0.83033 0.89903 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -2.53 8.56 -68.77 -0.59 -3.11 16 3 C 0.22 1.45 6.70 22.82 0.15 1.61 16 4 C -0.31 -0.73 8.01 22.43 0.18 -0.55 16 5 C 0.21 0.75 6.67 22.60 0.15 0.90 16 6 O -0.31 -0.70 9.80 -90.38 -0.89 -1.58 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.05 16 8 C -0.16 -0.45 5.30 -19.80 -0.11 -0.55 16 9 C -0.07 0.01 2.36 71.24 0.17 0.18 16 10 O -0.56 -1.50 12.86 -148.98 -1.92 -3.42 16 11 Si 0.75 -3.18 30.19 68.60 2.07 -1.11 16 12 C 0.00 0.00 8.14 22.50 0.18 0.18 16 13 C -0.23 -1.36 5.89 -20.00 -0.12 -1.48 16 14 C 0.57 4.50 7.76 86.63 0.67 5.17 16 15 O -0.56 -8.89 14.75 16.87 0.25 -8.64 16 16 N -0.70 -0.27 5.21 -443.42 -2.31 -2.58 16 17 C 0.11 -0.15 4.32 45.52 0.20 0.05 16 18 H 0.09 0.27 7.46 -2.39 -0.02 0.25 16 19 C -0.14 0.57 7.25 31.12 0.23 0.79 16 20 C -0.07 0.42 3.86 -11.02 -0.04 0.37 16 21 H 0.11 -0.95 8.09 -2.39 -0.02 -0.97 16 22 C -0.07 0.25 5.29 -19.87 -0.11 0.15 16 23 C -0.08 0.08 9.26 22.27 0.21 0.29 16 24 C -0.19 -0.26 5.37 -19.87 -0.11 -0.37 16 25 C 0.51 1.98 3.32 71.24 0.24 2.22 16 26 F -0.18 -0.90 15.97 44.97 0.72 -0.18 16 27 F -0.18 -0.96 17.23 44.97 0.77 -0.19 16 28 F -0.18 -1.00 17.24 44.97 0.78 -0.22 16 29 C -0.09 0.07 9.43 22.27 0.21 0.28 16 30 C -0.12 0.46 10.05 22.27 0.22 0.68 16 31 C -0.09 0.40 8.61 22.27 0.19 0.59 16 32 C -0.13 0.71 7.29 31.12 0.23 0.94 16 33 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.07 -0.37 7.65 -2.39 -0.02 -0.38 16 35 H 0.07 -0.28 7.67 -2.38 -0.02 -0.30 16 36 H 0.17 -0.50 4.50 -2.91 -0.01 -0.51 16 37 H 0.07 -0.59 7.64 -2.39 -0.02 -0.60 16 38 H 0.06 -0.41 7.66 -2.39 -0.02 -0.43 16 39 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H 0.08 -0.15 7.82 -2.39 -0.02 -0.17 16 41 H 0.39 -2.02 8.74 -74.06 -0.65 -2.67 16 42 H -0.28 -0.13 7.11 99.48 0.71 0.58 16 43 H -0.27 0.39 6.74 99.48 0.67 1.06 16 44 H 0.16 -0.61 3.20 -2.91 -0.01 -0.62 16 45 H 0.41 -1.97 6.72 -92.71 -0.62 -2.59 16 46 H 0.10 -0.60 6.31 -2.39 -0.02 -0.61 16 47 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 48 H 0.14 -0.50 8.05 -2.91 -0.02 -0.52 16 49 H 0.14 -0.34 7.16 -2.91 -0.02 -0.36 16 50 H 0.16 -1.28 8.06 -2.91 -0.02 -1.31 16 51 H 0.15 -1.30 6.66 -2.91 -0.02 -1.32 16 52 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 53 H 0.11 -0.73 7.72 -2.39 -0.02 -0.75 16 Total: 0.00 -25.44 443.81 3.62 -21.83 By element: Atomic # 1 Polarization: -14.13 SS G_CDS: -0.24 Total: -14.37 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 4.97 Total: 13.59 kcal Atomic # 7 Polarization: -0.27 SS G_CDS: -2.31 Total: -2.58 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -3.14 Total: -16.76 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 2.27 Total: -0.59 kcal Atomic # 14 Polarization: -3.18 SS G_CDS: 2.07 Total: -1.11 kcal Total: -25.44 3.62 -21.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_12297780.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.544 kcal (2) G-P(sol) polarization free energy of solvation -25.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds