Wall clock time and date at job start Tue Mar 9 2021 13:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86299 * 109.47081 * 2 1 4 4 C 1.50699 * 109.47415 * 239.99734 * 2 1 3 5 5 C 1.38241 * 119.99846 * 300.00267 * 4 2 1 6 6 C 1.38228 * 119.99721 * 180.02562 * 5 4 2 7 7 C 1.38233 * 120.00320 * 359.95047 * 6 5 4 8 8 C 1.50701 * 120.00193 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47110 * 90.00281 * 8 7 6 10 10 O 1.21286 * 119.99554 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00433 * 180.02562 * 9 8 7 12 12 C 1.46492 * 120.00368 * 179.97438 * 11 9 8 13 13 H 1.09005 * 112.84630 * 23.80070 * 12 11 9 14 14 C 1.53776 * 113.61713 * 154.99951 * 12 11 9 15 15 C 1.53785 * 87.08214 * 89.20038 * 14 12 11 16 16 H 1.08998 * 113.61399 * 270.79902 * 15 14 12 17 17 C 1.50701 * 113.61212 * 139.98431 * 15 14 12 18 18 C 1.38217 * 120.00041 * 299.99490 * 17 15 14 19 19 C 1.38256 * 120.00087 * 179.97438 * 18 17 15 20 20 C 1.38215 * 119.99734 * 0.05278 * 19 18 17 21 21 C 1.38253 * 120.00294 * 359.97438 * 20 19 18 22 22 C 1.50696 * 119.99941 * 180.02562 * 21 20 19 23 23 F 1.39891 * 109.47206 * 359.97438 * 22 21 20 24 24 F 1.39900 * 109.47125 * 120.00017 * 22 21 20 25 25 F 1.39901 * 109.46951 * 239.99734 * 22 21 20 26 26 C 1.38212 * 119.99859 * 359.97438 * 21 20 19 27 27 C 1.53782 * 113.69314 * 252.53735 * 12 11 9 28 28 C 1.38235 * 119.99981 * 0.28087 * 7 6 5 29 29 C 1.38233 * 119.99822 * 359.53493 * 28 7 6 30 30 H 0.96690 * 114.00031 * 60.00421 * 1 2 3 31 31 H 1.09008 * 109.47050 * 119.99524 * 2 1 3 32 32 H 1.48501 * 110.00273 * 59.99504 * 3 2 1 33 33 H 1.48496 * 110.00119 * 181.31980 * 3 2 1 34 34 H 1.07997 * 119.99634 * 359.97438 * 5 4 2 35 35 H 1.08006 * 119.99634 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47045 * 330.00233 * 8 7 6 37 37 H 1.08996 * 109.47402 * 210.00467 * 8 7 6 38 38 H 0.97000 * 119.99342 * 0.02562 * 11 9 8 39 39 H 1.09002 * 113.61481 * 334.65200 * 14 12 11 40 40 H 1.09000 * 113.69417 * 203.76714 * 14 12 11 41 41 H 1.08001 * 119.99701 * 0.02562 * 18 17 15 42 42 H 1.07995 * 120.00047 * 180.32212 * 19 18 17 43 43 H 1.08000 * 119.99306 * 179.97438 * 20 19 18 44 44 H 1.08000 * 119.99961 * 180.02562 * 26 21 20 45 45 H 1.08998 * 113.61411 * 156.32475 * 27 12 11 46 46 H 1.08999 * 113.61642 * 25.41790 * 27 12 11 47 47 H 1.08001 * 120.00143 * 179.72395 * 28 7 6 48 48 H 1.07998 * 120.00102 * 180.21322 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.5974 -2.0340 -1.4491 6 6 2.0587 -2.6857 -2.5774 7 6 2.8531 -2.0139 -3.4876 8 6 3.3555 -2.7243 -4.7180 9 6 2.3627 -2.5514 -5.8385 10 8 1.3469 -1.9144 -5.6557 11 7 2.6030 -3.1055 -7.0434 12 6 1.6376 -2.9379 -8.1324 13 1 1.0107 -2.0546 -8.0100 14 6 2.2609 -3.0617 -9.5327 15 6 1.9735 -4.5697 -9.4413 16 1 2.7839 -5.1422 -8.9903 17 6 1.4817 -5.1698 -10.7333 18 6 0.3150 -4.7055 -11.3110 19 6 -0.1359 -5.2557 -12.4965 20 6 0.5794 -6.2707 -13.1034 21 6 1.7461 -6.7355 -12.5253 22 6 2.5263 -7.8418 -13.1873 23 9 1.8765 -8.2316 -14.3632 24 9 3.8129 -7.3861 -13.4940 25 9 2.6135 -8.9352 -12.3189 26 6 2.1974 -6.1848 -11.3407 27 6 0.8455 -4.2151 -8.4580 28 6 3.1910 -0.6918 -3.2665 29 6 2.7266 -0.0389 -2.1401 30 1 -0.3933 0.4416 -0.7650 31 1 1.7924 -0.5138 0.8901 32 1 1.5614 2.4680 1.2084 33 1 3.5346 1.7703 -0.0321 34 1 0.9768 -2.5588 -0.7380 35 1 1.7981 -3.7199 -2.7481 36 1 3.4770 -3.7855 -4.5007 37 1 4.3155 -2.3021 -5.0148 38 1 3.4149 -3.6159 -7.1891 39 1 3.3236 -2.8207 -9.5605 40 1 1.6916 -2.5550 -10.3119 41 1 -0.2439 -3.9124 -10.8367 42 1 -1.0447 -4.8894 -12.9506 43 1 0.2269 -6.7007 -14.0292 44 1 3.1090 -6.5476 -10.8893 45 1 -0.1119 -4.0236 -8.9425 46 1 0.7655 -4.9054 -7.6182 47 1 3.8154 -0.1682 -3.9753 48 1 2.9878 0.9950 -1.9690 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_12335836.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:02:32 Heat of formation + Delta-G solvation = -135.443484 kcal Electronic energy + Delta-G solvation = -34494.633411 eV Core-core repulsion = 29259.763603 eV Total energy + Delta-G solvation = -5234.869809 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 392.139 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -51.23467 -48.76405 -48.70396 -41.65890 -40.87631 -40.09922 -38.86729 -37.60747 -34.65408 -33.96930 -32.83135 -32.07353 -31.91717 -29.68648 -27.15189 -26.62253 -26.49397 -25.46532 -23.80124 -23.45839 -22.78729 -22.19935 -21.34718 -20.34503 -19.56042 -19.43116 -19.01122 -18.45309 -18.08839 -17.32867 -17.29976 -16.88099 -16.66995 -16.39825 -16.16373 -16.02217 -15.93710 -15.63050 -15.52130 -15.46522 -15.14969 -15.06582 -14.97999 -14.87011 -14.76110 -14.66813 -14.48345 -14.47246 -14.18959 -14.04299 -13.78156 -13.45990 -13.30460 -13.28905 -12.96176 -12.92335 -12.71953 -12.38588 -12.25782 -11.97731 -11.85631 -11.72452 -11.69215 -11.23271 -10.96071 -10.45008 -10.21113 -10.02318 -9.86723 -9.78768 -9.59364 -5.00828 -0.08594 0.23246 0.25058 0.46438 1.30587 1.60554 1.61108 1.66117 1.92651 2.16944 2.43290 2.67688 2.80432 2.95702 3.35241 3.47813 3.49889 3.63718 3.66386 3.72504 3.80651 3.84740 3.92223 3.96727 4.05257 4.07215 4.08403 4.12109 4.25057 4.37473 4.39993 4.46886 4.49141 4.63429 4.65678 4.69617 4.73279 4.79642 4.88881 4.91166 4.98519 5.03981 5.05360 5.09881 5.16181 5.20354 5.32605 5.39009 5.47102 5.54617 5.60186 5.67712 5.78469 6.02947 6.58966 6.71792 7.30987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.077 4.077 3 Si 0.774 3.226 4 C -0.128 4.128 5 C -0.108 4.108 6 C -0.116 4.116 7 C -0.072 4.072 8 C -0.099 4.099 9 C 0.517 3.483 10 O -0.576 6.576 11 N -0.703 5.703 12 C 0.116 3.884 13 H 0.085 0.915 14 C -0.124 4.124 15 C -0.067 4.067 16 H 0.113 0.887 17 C -0.073 4.073 18 C -0.086 4.086 19 C -0.118 4.118 20 C -0.089 4.089 21 C -0.194 4.194 22 C 0.506 3.494 23 F -0.182 7.182 24 F -0.182 7.182 25 F -0.183 7.183 26 C -0.075 4.075 27 C -0.142 4.142 28 C -0.110 4.110 29 C -0.124 4.124 30 H 0.394 0.606 31 H 0.105 0.895 32 H -0.298 1.298 33 H -0.282 1.282 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.417 0.583 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.143 0.857 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 1.601 -3.277 4.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.187 4.187 3 Si 0.680 3.320 4 C -0.129 4.129 5 C -0.127 4.127 6 C -0.134 4.134 7 C -0.072 4.072 8 C -0.138 4.138 9 C 0.304 3.696 10 O -0.454 6.454 11 N -0.355 5.355 12 C 0.010 3.990 13 H 0.103 0.897 14 C -0.162 4.162 15 C -0.085 4.085 16 H 0.131 0.869 17 C -0.073 4.073 18 C -0.104 4.104 19 C -0.136 4.136 20 C -0.107 4.107 21 C -0.196 4.196 22 C 0.452 3.548 23 F -0.163 7.163 24 F -0.164 7.164 25 F -0.165 7.165 26 C -0.093 4.093 27 C -0.181 4.181 28 C -0.127 4.127 29 C -0.141 4.141 30 H 0.243 0.757 31 H 0.122 0.878 32 H -0.227 1.227 33 H -0.208 1.208 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.254 0.746 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.169 0.831 42 H 0.173 0.827 43 H 0.160 0.840 44 H 0.158 0.842 45 H 0.117 0.883 46 H 0.086 0.914 47 H 0.160 0.840 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.082 2.294 -2.209 3.805 hybrid contribution 0.421 -1.421 0.000 1.482 sum 2.503 0.872 -2.210 3.451 Atomic orbital electron populations 1.86444 1.17515 1.82231 1.50384 1.25224 0.85123 1.11097 0.97219 0.93599 0.77988 0.75637 0.84738 1.20407 0.99701 0.95364 0.97403 1.21071 0.99337 0.94349 0.97905 1.21230 0.97305 1.00645 0.94224 1.19585 0.97693 0.94519 0.95405 1.20761 0.99054 1.04301 0.89720 1.20953 0.86935 0.77753 0.83919 1.90745 1.29838 1.42016 1.82827 1.45597 1.24652 1.54980 1.10311 1.21789 0.91697 0.98629 0.86845 0.89701 1.23384 1.02947 0.94375 0.95531 1.21631 0.99145 0.96185 0.91550 0.86886 1.19829 0.95054 0.95551 0.96877 1.21579 0.95114 0.98968 0.94724 1.21468 1.00729 0.95688 0.95694 1.21240 0.92799 0.96458 1.00181 1.20000 0.99504 1.00157 0.99898 1.18510 0.77739 0.82128 0.76401 1.93158 1.81178 1.92032 1.49954 1.93211 1.40927 1.88844 1.93386 1.93211 1.96256 1.57326 1.69674 1.20952 0.99967 0.95390 0.93021 1.23569 0.98274 0.97372 0.98884 1.21240 1.00030 0.94114 0.97364 1.21168 0.98242 1.00003 0.94711 0.75672 0.87762 1.22654 1.20839 0.86079 0.85128 0.85458 0.84945 0.74554 0.89320 0.87968 0.83113 0.82697 0.84025 0.84181 0.88307 0.91408 0.83954 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.98 12.77 -148.98 -1.90 -3.88 16 2 C -0.08 -0.17 2.82 71.24 0.20 0.03 16 3 Si 0.77 -0.18 29.79 68.60 2.04 1.86 16 4 C -0.13 -0.40 5.39 -19.87 -0.11 -0.51 16 5 C -0.11 -0.46 9.61 22.27 0.21 -0.25 16 6 C -0.12 -0.28 9.70 22.27 0.22 -0.07 16 7 C -0.07 -0.02 4.37 -19.87 -0.09 -0.11 16 8 C -0.10 0.63 5.83 29.10 0.17 0.80 16 9 C 0.52 -0.57 7.82 87.66 0.69 0.11 16 10 O -0.58 -5.24 15.63 -3.05 -0.05 -5.29 16 11 N -0.70 4.80 5.27 -440.05 -2.32 2.48 16 12 C 0.12 -0.62 4.32 45.52 0.20 -0.43 16 13 H 0.08 -0.03 7.46 -2.38 -0.02 -0.05 16 14 C -0.12 1.11 7.29 31.12 0.23 1.34 16 15 C -0.07 0.55 3.86 -11.01 -0.04 0.51 16 16 H 0.11 -1.19 8.09 -2.39 -0.02 -1.21 16 17 C -0.07 0.35 5.29 -19.86 -0.11 0.25 16 18 C -0.09 0.48 8.61 22.27 0.19 0.68 16 19 C -0.12 0.54 10.05 22.27 0.22 0.77 16 20 C -0.09 0.12 9.43 22.27 0.21 0.33 16 21 C -0.19 -0.12 5.37 -19.87 -0.11 -0.22 16 22 C 0.51 1.66 3.32 71.23 0.24 1.89 16 23 F -0.18 -0.80 15.97 44.97 0.72 -0.09 16 24 F -0.18 -0.84 17.24 44.97 0.78 -0.06 16 25 F -0.18 -0.90 17.24 44.97 0.78 -0.12 16 26 C -0.08 0.16 9.26 22.27 0.21 0.36 16 27 C -0.14 0.88 7.26 31.12 0.23 1.10 16 28 C -0.11 -0.04 9.70 22.27 0.22 0.18 16 29 C -0.12 -0.14 8.67 22.27 0.19 0.06 16 30 H 0.39 -1.47 8.70 -74.06 -0.64 -2.11 16 31 H 0.10 0.34 7.96 -2.38 -0.02 0.32 16 32 H -0.30 -2.07 7.11 99.48 0.71 -1.36 16 33 H -0.28 -1.01 7.11 99.48 0.71 -0.30 16 34 H 0.12 0.49 8.06 -2.91 -0.02 0.47 16 35 H 0.13 -0.07 8.06 -2.91 -0.02 -0.10 16 36 H 0.13 -1.38 8.09 -2.39 -0.02 -1.40 16 37 H 0.13 -1.55 8.08 -2.39 -0.02 -1.57 16 38 H 0.42 -5.44 8.70 -92.71 -0.81 -6.25 16 39 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 40 H 0.10 -0.93 7.72 -2.39 -0.02 -0.95 16 41 H 0.15 -1.43 6.66 -2.91 -0.02 -1.45 16 42 H 0.16 -1.38 8.06 -2.91 -0.02 -1.40 16 43 H 0.14 -0.42 7.16 -2.91 -0.02 -0.44 16 44 H 0.14 -0.63 8.05 -2.91 -0.02 -0.66 16 45 H 0.10 -0.67 6.31 -2.39 -0.02 -0.69 16 46 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 47 H 0.14 -0.59 8.06 -2.91 -0.02 -0.61 16 48 H 0.14 -0.40 4.88 -2.91 -0.01 -0.42 16 Total: 0.00 -22.48 412.49 2.83 -19.65 By element: Atomic # 1 Polarization: -21.01 SS G_CDS: -0.38 Total: -21.39 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 3.16 Total: 6.84 kcal Atomic # 7 Polarization: 4.80 SS G_CDS: -2.32 Total: 2.48 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -1.95 Total: -9.17 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 2.27 Total: -0.27 kcal Atomic # 14 Polarization: -0.18 SS G_CDS: 2.04 Total: 1.86 kcal Total: -22.48 2.83 -19.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_12335836.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.793 kcal (2) G-P(sol) polarization free energy of solvation -22.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds