Wall clock time and date at job start Tue Mar 9 2021 13:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86299 * 109.47522 * 2 1 4 4 C 1.50702 * 109.46636 * 120.00197 * 2 1 3 5 5 C 1.38190 * 119.83999 * 254.97330 * 4 2 1 6 6 C 1.38306 * 120.14723 * 179.69756 * 5 4 2 7 7 F 1.35101 * 120.08852 * 180.32496 * 6 5 4 8 8 C 1.39813 * 119.82694 * 0.57908 * 6 5 4 9 9 C 1.47697 * 120.15255 * 179.72039 * 8 6 5 10 10 O 1.21578 * 119.99917 * 359.72646 * 9 8 6 11 11 N 1.34772 * 120.00111 * 179.72905 * 9 8 6 12 12 C 1.46506 * 120.00033 * 180.02562 * 11 9 8 13 13 H 1.08992 * 112.90684 * 336.24748 * 12 11 9 14 14 C 1.54049 * 113.61276 * 107.61836 * 12 11 9 15 15 C 1.53781 * 87.08031 * 89.07129 * 14 12 11 16 16 H 1.08999 * 113.61181 * 270.87794 * 15 14 12 17 17 C 1.50696 * 113.69134 * 139.98880 * 15 14 12 18 18 C 1.38216 * 119.99821 * 322.18905 * 17 15 14 19 19 C 1.38259 * 119.99653 * 179.74855 * 18 17 15 20 20 C 1.38215 * 120.00051 * 0.52680 * 19 18 17 21 21 C 1.38255 * 120.00049 * 359.74799 * 20 19 18 22 22 C 1.50698 * 120.00174 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.46906 * 269.98173 * 22 21 20 24 24 F 1.39900 * 109.47022 * 29.97962 * 22 21 20 25 25 F 1.39895 * 109.47461 * 149.97852 * 22 21 20 26 26 C 1.38213 * 119.99894 * 359.97438 * 21 20 19 27 27 C 1.53781 * 87.08070 * 25.42738 * 15 14 12 28 28 C 1.39649 * 119.69109 * 359.44997 * 8 6 5 29 29 C 1.38069 * 119.85006 * 0.26906 * 28 8 6 30 30 F 1.35106 * 119.91279 * 180.02562 * 29 28 8 31 31 H 0.96710 * 113.99477 * 60.00300 * 1 2 3 32 32 H 1.09003 * 109.46900 * 239.99643 * 2 1 3 33 33 H 1.48504 * 109.99893 * 59.99396 * 3 2 1 34 34 H 1.48497 * 109.99963 * 181.31591 * 3 2 1 35 35 H 1.08002 * 119.92755 * 0.02791 * 5 4 2 36 36 H 0.97002 * 120.00078 * 359.97438 * 11 9 8 37 37 H 1.09005 * 113.62125 * 334.52173 * 14 12 11 38 38 H 1.09003 * 113.61268 * 203.61961 * 14 12 11 39 39 H 1.07997 * 119.99950 * 0.02562 * 18 17 15 40 40 H 1.08006 * 120.00118 * 180.29942 * 19 18 17 41 41 H 1.08004 * 119.99821 * 179.77406 * 20 19 18 42 42 H 1.08004 * 119.99793 * 179.97438 * 26 21 20 43 43 H 1.09002 * 113.61445 * 89.11830 * 27 15 14 44 44 H 1.09002 * 113.61408 * 219.93560 * 27 15 14 45 45 H 1.07998 * 120.07109 * 180.25501 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7105 1.2305 5 6 2.4534 0.0197 2.2811 6 6 2.9104 -0.6254 3.4160 7 9 3.4146 0.0901 4.4451 8 6 2.8541 -2.0202 3.4932 9 6 3.3458 -2.7169 4.6992 10 8 3.8054 -2.0776 5.6256 11 7 3.2850 -4.0612 4.7727 12 6 3.7722 -4.7522 5.9692 13 1 4.5060 -4.1698 6.5262 14 6 2.6476 -5.3336 6.8469 15 6 2.7541 -6.6121 5.9989 16 1 2.1137 -6.6055 5.1169 17 6 2.6328 -7.8823 6.8006 18 6 3.1993 -7.9621 8.0588 19 6 3.0835 -9.1257 8.7965 20 6 2.4108 -10.2129 8.2713 21 6 1.8490 -10.1350 7.0104 22 6 1.1160 -11.3205 6.4375 23 9 2.0144 -12.1275 5.7313 24 9 0.5420 -12.0605 7.4767 25 9 0.1111 -10.8741 5.5727 26 6 1.9598 -8.9698 6.2753 27 6 4.2078 -6.2038 5.7077 28 6 2.3256 -2.7513 2.4272 29 6 1.8677 -2.0936 1.3029 30 9 1.3557 -2.7996 0.2711 31 1 -0.3933 0.4417 -0.7652 32 1 1.7923 -0.5139 -0.8900 33 1 1.5615 2.4679 1.2085 34 1 3.5347 1.7701 -0.0320 35 1 2.4999 1.0969 2.2181 36 1 2.9180 -4.5713 4.0337 37 1 1.6953 -4.8148 6.7370 38 1 2.9358 -5.4753 7.8886 39 1 3.7284 -7.1140 8.4675 40 1 3.5220 -9.1865 9.7817 41 1 2.3235 -11.1231 8.8461 42 1 1.5213 -8.9091 5.2901 43 1 4.9225 -6.5834 6.4379 44 1 4.5155 -6.3887 4.6785 45 1 2.2753 -3.8287 2.4821 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_12360598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:03:17 Heat of formation + Delta-G solvation = -210.527656 kcal Electronic energy + Delta-G solvation = -38316.159775 eV Core-core repulsion = 32294.663740 eV Total energy + Delta-G solvation = -6021.496035 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 414.104 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -51.24288 -50.28948 -50.18650 -48.76703 -48.71726 -41.87990 -40.95924 -40.00371 -38.92287 -37.63071 -35.08197 -33.53318 -32.80098 -31.97777 -31.53974 -28.09440 -27.15936 -26.67541 -26.26342 -24.55301 -23.96231 -23.44607 -22.60644 -22.08149 -20.53282 -19.75081 -19.57574 -19.42054 -19.03569 -18.68309 -18.61332 -18.52095 -17.63602 -17.33044 -17.26138 -16.99726 -16.61525 -16.41327 -16.28460 -16.20661 -15.88180 -15.75567 -15.63971 -15.58456 -15.41756 -15.37081 -15.17922 -15.00542 -14.87931 -14.82983 -14.64643 -14.49292 -14.23130 -13.97667 -13.89730 -13.76606 -13.64598 -13.48885 -13.32577 -13.13514 -12.95030 -12.45389 -12.38364 -12.12671 -11.91367 -11.81519 -11.34534 -11.30349 -10.75773 -10.43967 -10.28683 -10.20040 -9.95800 -9.81292 -5.01827 -0.95076 -0.47507 -0.10107 0.21545 1.15516 1.24529 1.60129 1.60458 1.71994 1.88050 2.09806 2.41466 2.62036 2.66627 2.70863 2.93389 2.94515 3.17115 3.33896 3.35059 3.39674 3.56943 3.61310 3.65813 3.72939 3.82505 3.90681 3.99197 4.06028 4.07968 4.19358 4.22570 4.23603 4.37275 4.38456 4.52024 4.59259 4.61360 4.63693 4.74997 4.80415 4.87806 4.91676 5.00019 5.07417 5.15528 5.22771 5.30008 5.37037 5.55513 5.76754 6.22428 6.79888 6.90268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.087 4.087 3 Si 0.780 3.220 4 C -0.062 4.062 5 C -0.148 4.148 6 C 0.137 3.863 7 F -0.125 7.125 8 C -0.147 4.147 9 C 0.563 3.437 10 O -0.558 6.558 11 N -0.688 5.688 12 C 0.112 3.888 13 H 0.093 0.907 14 C -0.142 4.142 15 C -0.069 4.069 16 H 0.114 0.886 17 C -0.073 4.073 18 C -0.086 4.086 19 C -0.118 4.118 20 C -0.086 4.086 21 C -0.194 4.194 22 C 0.506 3.494 23 F -0.183 7.183 24 F -0.183 7.183 25 F -0.182 7.182 26 C -0.076 4.076 27 C -0.122 4.122 28 C -0.072 4.072 29 C 0.108 3.892 30 F -0.119 7.119 31 H 0.410 0.590 32 H 0.104 0.896 33 H -0.287 1.287 34 H -0.283 1.283 35 H 0.151 0.849 36 H 0.417 0.583 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 0.451 -5.154 5.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.196 4.196 3 Si 0.685 3.315 4 C -0.063 4.063 5 C -0.166 4.166 6 C 0.117 3.883 7 F -0.103 7.103 8 C -0.151 4.151 9 C 0.350 3.650 10 O -0.437 6.437 11 N -0.340 5.340 12 C 0.007 3.993 13 H 0.111 0.889 14 C -0.180 4.180 15 C -0.087 4.087 16 H 0.132 0.868 17 C -0.073 4.073 18 C -0.103 4.103 19 C -0.136 4.136 20 C -0.104 4.104 21 C -0.196 4.196 22 C 0.452 3.548 23 F -0.165 7.165 24 F -0.164 7.164 25 F -0.163 7.163 26 C -0.094 4.094 27 C -0.160 4.160 28 C -0.091 4.091 29 C 0.088 3.912 30 F -0.098 7.098 31 H 0.262 0.738 32 H 0.122 0.878 33 H -0.215 1.215 34 H -0.209 1.209 35 H 0.168 0.832 36 H 0.255 0.745 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.170 0.830 40 H 0.173 0.827 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.127 0.873 44 H 0.109 0.891 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.248 1.112 -3.559 3.932 hybrid contribution -0.399 -0.977 -0.037 1.056 sum 0.849 0.136 -3.596 3.697 Atomic orbital electron populations 1.86442 1.16085 1.82650 1.51724 1.24831 0.86926 1.11845 0.95972 0.93884 0.77874 0.74799 0.84988 1.19757 0.97873 0.92627 0.96089 1.20937 1.02157 1.01304 0.92197 1.17767 0.96410 0.88881 0.85259 1.91594 1.84123 1.77717 1.56853 1.19830 1.06414 0.91835 0.97022 1.17922 0.78299 0.83121 0.85651 1.90875 1.46421 1.66827 1.39617 1.45405 1.62983 1.04964 1.20649 1.22016 0.97292 0.93587 0.86441 0.88933 1.23640 0.99285 0.95242 0.99837 1.21648 0.98516 0.89969 0.98543 0.86807 1.19786 0.97378 0.94899 0.95243 1.21583 0.96841 0.98500 0.93393 1.21463 0.98482 0.92239 1.01375 1.21184 0.95403 1.00549 0.93287 1.20003 1.06620 0.94253 0.98703 1.18514 0.77219 0.83397 0.75657 1.93219 1.67816 1.75713 1.79730 1.93184 1.85629 1.79207 1.58378 1.93183 1.62667 1.89120 1.71317 1.21005 0.97209 0.91188 1.00013 1.23411 0.95954 0.92133 1.04520 1.21434 0.95367 1.02640 0.89654 1.17268 0.98915 0.88640 0.86362 1.91580 1.84284 1.77861 1.56046 0.73803 0.87777 1.21476 1.20938 0.83226 0.74454 0.91290 0.87699 0.82995 0.82672 0.84210 0.84001 0.87341 0.89063 0.79283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.64 12.86 -148.98 -1.92 -0.28 16 2 C -0.09 0.29 2.43 71.24 0.17 0.47 16 3 Si 0.78 -3.68 30.18 68.60 2.07 -1.61 16 4 C -0.06 -0.09 5.30 -19.78 -0.10 -0.20 16 5 C -0.15 -0.61 8.62 22.27 0.19 -0.42 16 6 C 0.14 0.96 7.28 22.67 0.17 1.13 16 7 F -0.12 -1.57 15.55 44.97 0.70 -0.87 16 8 C -0.15 -0.41 5.88 -20.06 -0.12 -0.53 16 9 C 0.56 2.58 7.77 86.74 0.67 3.26 16 10 O -0.56 -7.73 14.94 -3.96 -0.06 -7.79 16 11 N -0.69 2.58 5.22 -442.60 -2.31 0.28 16 12 C 0.11 -0.47 4.34 45.61 0.20 -0.27 16 13 H 0.09 0.02 7.46 -2.39 -0.02 0.00 16 14 C -0.14 0.79 7.27 31.21 0.23 1.02 16 15 C -0.07 0.55 3.85 -11.01 -0.04 0.50 16 16 H 0.11 -1.17 8.09 -2.39 -0.02 -1.19 16 17 C -0.07 0.34 5.29 -19.87 -0.11 0.24 16 18 C -0.09 0.48 8.60 22.27 0.19 0.67 16 19 C -0.12 0.53 10.05 22.27 0.22 0.76 16 20 C -0.09 0.11 9.40 22.27 0.21 0.32 16 21 C -0.19 -0.16 5.45 -19.87 -0.11 -0.27 16 22 C 0.51 1.79 3.36 71.24 0.24 2.03 16 23 F -0.18 -0.97 17.30 44.97 0.78 -0.19 16 24 F -0.18 -0.91 16.46 44.97 0.74 -0.17 16 25 F -0.18 -0.81 16.46 44.97 0.74 -0.07 16 26 C -0.08 0.14 9.06 22.27 0.20 0.35 16 27 C -0.12 1.06 7.28 31.12 0.23 1.29 16 28 C -0.07 0.23 9.51 22.57 0.21 0.44 16 29 C 0.11 -0.01 7.23 22.33 0.16 0.15 16 30 F -0.12 -0.04 16.73 44.97 0.75 0.71 16 31 H 0.41 -5.52 8.74 -74.05 -0.65 -6.17 16 32 H 0.10 -0.75 7.89 -2.39 -0.02 -0.77 16 33 H -0.29 -0.63 6.74 99.48 0.67 0.04 16 34 H -0.28 -0.24 7.11 99.48 0.71 0.46 16 35 H 0.15 0.53 4.87 -2.91 -0.01 0.51 16 36 H 0.42 -4.36 6.73 -92.71 -0.62 -4.98 16 37 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 38 H 0.10 -0.72 6.33 -2.39 -0.02 -0.73 16 39 H 0.15 -1.46 6.68 -2.91 -0.02 -1.48 16 40 H 0.16 -1.36 8.06 -2.91 -0.02 -1.39 16 41 H 0.14 -0.41 7.60 -2.91 -0.02 -0.43 16 42 H 0.14 -0.59 7.60 -2.91 -0.02 -0.61 16 43 H 0.11 -1.02 7.71 -2.39 -0.02 -1.04 16 44 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 45 H 0.19 -2.18 6.40 -2.91 -0.02 -2.19 16 Total: 0.00 -24.40 398.02 4.18 -20.22 By element: Atomic # 1 Polarization: -21.03 SS G_CDS: -0.14 Total: -21.17 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 2.82 Total: 10.94 kcal Atomic # 7 Polarization: 2.58 SS G_CDS: -2.31 Total: 0.28 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -1.97 Total: -8.06 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 3.71 Total: -0.60 kcal Atomic # 14 Polarization: -3.68 SS G_CDS: 2.07 Total: -1.61 kcal Total: -24.40 4.18 -20.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_12360598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.305 kcal (2) G-P(sol) polarization free energy of solvation -24.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds