Wall clock time and date at job start Tue Mar 9 2021 13:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86298 * 109.47234 * 2 1 4 4 C 1.50696 * 109.47244 * 120.00472 * 2 1 3 5 5 C 1.34714 * 125.66169 * 64.99908 * 4 2 1 6 6 C 1.40970 * 107.02425 * 180.02562 * 5 4 2 7 7 C 1.35934 * 106.74500 * 0.02562 * 6 5 4 8 8 C 1.47819 * 125.93213 * 180.02562 * 7 6 5 9 9 C 1.39170 * 119.99940 * 179.97438 * 8 7 6 10 10 C 1.39467 * 119.75703 * 179.74111 * 9 8 7 11 11 C 1.47563 * 120.12227 * 180.23391 * 10 9 8 12 12 O 1.21588 * 119.99511 * 180.02562 * 11 10 9 13 13 N 1.34773 * 120.00107 * 359.97438 * 11 10 9 14 14 C 1.46497 * 119.99939 * 179.97438 * 13 11 10 15 15 H 1.09002 * 112.84902 * 23.81121 * 14 13 11 16 16 C 1.53782 * 113.61274 * 155.00470 * 14 13 11 17 17 C 1.53776 * 87.08363 * 89.11571 * 16 14 13 18 18 H 1.08996 * 113.61690 * 270.88298 * 17 16 14 19 19 C 1.50705 * 113.61564 * 140.06369 * 17 16 14 20 20 C 1.38218 * 119.99961 * 299.73161 * 19 17 16 21 21 C 1.38255 * 119.99801 * 179.78640 * 20 19 17 22 22 C 1.38211 * 120.00014 * 0.46419 * 21 20 19 23 23 C 1.38254 * 119.99792 * 359.76116 * 22 21 20 24 24 C 1.50703 * 119.99756 * 180.02562 * 23 22 21 25 25 F 1.39903 * 109.47362 * 270.02859 * 24 23 22 26 26 F 1.39900 * 109.47232 * 30.03070 * 24 23 22 27 27 F 1.39906 * 109.46943 * 150.02522 * 24 23 22 28 28 C 1.38213 * 120.00313 * 0.02914 * 23 22 21 29 29 C 1.53781 * 87.07968 * 25.43514 * 17 16 14 30 30 C 1.40220 * 119.75671 * 0.25483 * 10 9 8 31 31 O 1.35641 * 120.00066 * 179.97438 * 30 10 9 32 32 C 1.38817 * 119.99241 * 359.97438 * 30 10 9 33 33 C 1.37772 * 120.24614 * 0.02562 * 32 30 10 34 34 O 1.34340 * 125.66717 * 245.32563 * 4 2 1 35 35 H 0.96701 * 114.00323 * 59.98955 * 1 2 3 36 36 H 1.09005 * 109.46697 * 240.00542 * 2 1 3 37 37 H 1.48500 * 110.00390 * 298.68524 * 3 2 1 38 38 H 1.48502 * 109.99740 * 60.00827 * 3 2 1 39 39 H 1.07993 * 126.48785 * 359.97438 * 5 4 2 40 40 H 1.08002 * 126.62681 * 180.02562 * 6 5 4 41 41 H 1.08002 * 120.12562 * 0.02562 * 9 8 7 42 42 H 0.96996 * 120.00058 * 0.02562 * 13 11 10 43 43 H 1.08998 * 113.61391 * 203.66906 * 16 14 13 44 44 H 1.09000 * 113.61505 * 334.48314 * 16 14 13 45 45 H 1.08000 * 119.99611 * 359.97438 * 20 19 17 46 46 H 1.08001 * 119.99979 * 180.24902 * 21 20 19 47 47 H 1.08001 * 119.99797 * 179.79158 * 22 21 20 48 48 H 1.08001 * 119.99985 * 179.97438 * 28 23 22 49 49 H 1.09000 * 113.61338 * 220.02169 * 29 17 16 50 50 H 1.09000 * 113.62109 * 89.11629 * 29 17 16 51 51 H 0.96696 * 114.00302 * 90.00220 * 31 30 10 52 52 H 1.07999 * 119.87626 * 180.02562 * 32 30 10 53 53 H 1.08000 * 119.87607 * 179.97438 * 33 32 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.7571 -2.0169 1.5091 6 6 2.3813 -2.2612 2.7492 7 6 2.9069 -1.0779 3.1629 8 6 3.6571 -0.8530 4.4166 9 6 4.1429 0.4157 4.7188 10 6 4.8453 0.6234 5.9056 11 6 5.3596 1.9663 6.2365 12 8 5.9720 2.1447 7.2716 13 7 5.1512 2.9949 5.3909 14 6 5.6613 4.3283 5.7197 15 1 6.5050 4.3005 6.4092 16 6 5.9015 5.2169 4.4878 17 6 4.4426 5.6803 4.6353 18 1 3.7300 5.0579 4.0943 19 6 4.2478 7.1523 4.3775 20 6 4.9043 8.0837 5.1597 21 6 4.7289 9.4341 4.9203 22 6 3.8897 9.8527 3.9051 23 6 3.2294 8.9210 3.1257 24 6 2.3148 9.3774 2.0184 25 9 1.0177 9.5327 2.5190 26 9 2.7689 10.6002 1.5126 27 9 2.3088 8.4230 0.9954 28 6 3.4081 7.5710 3.3622 29 6 4.5632 5.3249 6.1266 30 6 5.0615 -0.4488 6.7831 31 8 5.7444 -0.2525 7.9385 32 6 4.5764 -1.7110 6.4692 33 6 3.8826 -1.9160 5.2968 34 8 2.6220 -0.1450 2.2343 35 1 -0.3934 0.4418 -0.7650 36 1 1.7923 -0.5138 -0.8901 37 1 1.5879 2.4586 -1.2242 38 1 1.5617 2.4678 1.2086 39 1 1.2368 -2.7399 0.8985 40 1 2.4322 -3.2061 3.2699 41 1 3.9727 1.2374 4.0389 42 1 4.6630 2.8525 4.5650 43 1 6.6306 6.0094 4.6565 44 1 6.0920 4.6542 3.5739 45 1 5.5566 7.7566 5.9559 46 1 5.2450 10.1619 5.5289 47 1 3.7501 10.9076 3.7203 48 1 2.8919 6.8432 2.7536 49 1 3.6717 4.8493 6.5355 50 1 4.9263 6.1469 6.7435 51 1 5.1858 -0.0081 8.6890 52 1 4.7436 -2.5353 7.1466 53 1 3.5082 -2.9006 5.0584 There are 83 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 83 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_13259648.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:06 Heat of formation + Delta-G solvation = -146.265690 kcal Electronic energy + Delta-G solvation = -45308.130845 eV Core-core repulsion = 39050.748945 eV Total energy + Delta-G solvation = -6257.381900 eV No. of doubly occupied orbitals = 83 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 460.138 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -51.27274 -48.79345 -48.75164 -43.69385 -41.87910 -41.09943 -39.90261 -38.72966 -38.12999 -37.81707 -34.86692 -34.18213 -33.03245 -32.79413 -32.54401 -31.65971 -30.11592 -27.19181 -26.67292 -26.59732 -26.35110 -25.15410 -23.57198 -23.46608 -23.04474 -22.50504 -21.81644 -21.19395 -20.47403 -19.60888 -19.58397 -19.44043 -19.09558 -18.93207 -18.79650 -17.88639 -17.36949 -17.26670 -17.06819 -16.70637 -16.63900 -16.39092 -16.22595 -16.07221 -15.86025 -15.75821 -15.61003 -15.59784 -15.37864 -15.20745 -15.02766 -14.91185 -14.89534 -14.69249 -14.51047 -14.46475 -14.26988 -14.18521 -14.07217 -13.95197 -13.79337 -13.60813 -13.42138 -13.23534 -13.16826 -13.08740 -12.93349 -12.80627 -12.43291 -12.13232 -11.94169 -11.85530 -11.78734 -11.27996 -11.06105 -10.93026 -10.69759 -10.44814 -10.31731 -10.23702 -10.06099 -9.82436 -8.89895 -4.98842 -0.55793 -0.21103 -0.11625 0.19981 0.75460 1.14294 1.38426 1.49344 1.57201 1.70712 1.86358 1.91458 1.98540 2.40230 2.62584 2.63732 2.91817 3.10814 3.20569 3.30877 3.40291 3.43031 3.57669 3.60362 3.66639 3.68938 3.80930 3.83377 3.91490 4.02157 4.04839 4.05702 4.08095 4.18946 4.21115 4.31254 4.36312 4.41975 4.59977 4.62498 4.65161 4.68050 4.75620 4.79685 4.84322 4.87054 4.89177 4.92636 5.00325 5.02784 5.10047 5.14062 5.16029 5.21535 5.29400 5.41127 5.45071 5.51363 5.59002 5.75558 6.00621 6.39803 6.49693 6.73308 7.10856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.043 4.043 3 Si 0.759 3.241 4 C -0.018 4.018 5 C -0.181 4.181 6 C -0.189 4.189 7 C 0.022 3.978 8 C -0.041 4.041 9 C -0.052 4.052 10 C -0.179 4.179 11 C 0.561 3.439 12 O -0.555 6.555 13 N -0.701 5.701 14 C 0.115 3.885 15 H 0.093 0.907 16 C -0.124 4.124 17 C -0.071 4.071 18 H 0.105 0.895 19 C -0.072 4.072 20 C -0.084 4.084 21 C -0.116 4.116 22 C -0.085 4.085 23 C -0.194 4.194 24 C 0.506 3.494 25 F -0.185 7.185 26 F -0.181 7.181 27 F -0.182 7.182 28 C -0.080 4.080 29 C -0.140 4.140 30 C 0.165 3.835 31 O -0.494 6.494 32 C -0.146 4.146 33 C -0.044 4.044 34 O -0.175 6.175 35 H 0.404 0.596 36 H 0.125 0.875 37 H -0.268 1.268 38 H -0.299 1.299 39 H 0.164 0.836 40 H 0.177 0.823 41 H 0.147 0.853 42 H 0.410 0.590 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.155 0.845 46 H 0.158 0.842 47 H 0.142 0.858 48 H 0.136 0.864 49 H 0.065 0.935 50 H 0.107 0.893 51 H 0.410 0.590 52 H 0.165 0.835 53 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.272 -2.776 -1.997 3.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.151 4.151 3 Si 0.663 3.337 4 C -0.068 4.068 5 C -0.200 4.200 6 C -0.208 4.208 7 C -0.027 4.027 8 C -0.042 4.042 9 C -0.071 4.071 10 C -0.183 4.183 11 C 0.349 3.651 12 O -0.434 6.434 13 N -0.353 5.353 14 C 0.010 3.990 15 H 0.111 0.889 16 C -0.162 4.162 17 C -0.090 4.090 18 H 0.123 0.877 19 C -0.072 4.072 20 C -0.102 4.102 21 C -0.133 4.133 22 C -0.103 4.103 23 C -0.195 4.195 24 C 0.452 3.548 25 F -0.166 7.166 26 F -0.162 7.162 27 F -0.164 7.164 28 C -0.098 4.098 29 C -0.178 4.178 30 C 0.119 3.881 31 O -0.307 6.307 32 C -0.164 4.164 33 C -0.062 4.062 34 O -0.073 6.073 35 H 0.257 0.743 36 H 0.143 0.857 37 H -0.194 1.194 38 H -0.226 1.226 39 H 0.181 0.819 40 H 0.195 0.805 41 H 0.164 0.836 42 H 0.248 0.752 43 H 0.128 0.872 44 H 0.106 0.894 45 H 0.172 0.828 46 H 0.176 0.824 47 H 0.160 0.840 48 H 0.154 0.846 49 H 0.084 0.916 50 H 0.125 0.875 51 H 0.271 0.729 52 H 0.182 0.818 53 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.126 -1.915 -1.080 3.059 hybrid contribution -2.326 0.085 -0.888 2.491 sum -0.200 -1.830 -1.969 2.695 Atomic orbital electron populations 1.86520 1.17529 1.80842 1.51774 1.24013 0.84547 1.12491 0.94072 0.93868 0.90413 0.71973 0.77476 1.21708 1.00665 0.92995 0.91422 1.21801 1.03710 0.96057 0.98470 1.22167 1.01999 0.99177 0.97412 1.20461 1.03762 0.87721 0.90774 1.17697 1.00342 0.94599 0.91522 1.21389 0.93790 0.97238 0.94656 1.20252 1.05758 0.93810 0.98488 1.18203 0.78996 0.84478 0.83391 1.90808 1.41658 1.84812 1.26149 1.45550 1.57638 1.08072 1.24076 1.21890 0.97412 0.80859 0.98860 0.88889 1.23416 0.95795 0.98994 0.97967 1.21626 0.98625 0.91089 0.97628 0.87731 1.19778 0.96404 0.96026 0.94988 1.21587 0.97578 0.92569 0.98416 1.21478 0.97853 0.96853 0.97138 1.21191 0.94987 0.99859 0.94296 1.19989 1.03371 0.96569 0.99605 1.18531 0.79360 0.74820 0.82128 1.93218 1.40534 1.95519 1.87357 1.93186 1.88820 1.45584 1.88596 1.93181 1.96551 1.64352 1.62267 1.20969 0.97562 0.93673 0.97575 1.23581 0.99278 0.99276 0.95688 1.18874 0.89771 0.91698 0.87802 1.84703 1.36357 1.91151 1.18514 1.21583 0.98848 0.97003 0.98994 1.21422 0.94434 0.99171 0.91200 1.83879 1.58596 1.38230 1.26620 0.74326 0.85710 1.19376 1.22648 0.81882 0.80535 0.83567 0.75244 0.87166 0.89351 0.82794 0.82415 0.84049 0.84578 0.91572 0.87485 0.72881 0.81765 0.81690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.04 12.86 -148.98 -1.92 -1.88 16 2 C -0.04 0.10 2.97 71.23 0.21 0.31 16 3 Si 0.76 -2.09 32.11 68.60 2.20 0.11 16 4 C -0.02 -0.04 6.24 24.88 0.16 0.12 16 5 C -0.18 -0.23 10.78 22.13 0.24 0.01 16 6 C -0.19 0.05 10.26 22.40 0.23 0.28 16 7 C 0.02 0.03 7.03 24.27 0.17 0.20 16 8 C -0.04 0.01 5.87 -20.13 -0.12 -0.10 16 9 C -0.05 0.01 9.20 22.79 0.21 0.22 16 10 C -0.18 -0.51 5.88 -20.04 -0.12 -0.62 16 11 C 0.56 2.99 7.76 86.70 0.67 3.66 16 12 O -0.56 -6.95 14.74 17.00 0.25 -6.70 16 13 N -0.70 0.69 5.21 -443.18 -2.31 -1.62 16 14 C 0.12 -0.27 4.33 45.52 0.20 -0.08 16 15 H 0.09 0.14 7.46 -2.39 -0.02 0.12 16 16 C -0.12 0.81 7.29 31.12 0.23 1.04 16 17 C -0.07 0.39 3.85 -11.01 -0.04 0.35 16 18 H 0.10 -0.65 8.09 -2.39 -0.02 -0.67 16 19 C -0.07 0.22 5.29 -19.87 -0.11 0.11 16 20 C -0.08 0.40 8.63 22.27 0.19 0.60 16 21 C -0.12 0.47 10.05 22.27 0.22 0.70 16 22 C -0.09 0.06 9.40 22.27 0.21 0.27 16 23 C -0.19 -0.38 5.45 -19.87 -0.11 -0.49 16 24 C 0.51 2.34 3.36 71.24 0.24 2.58 16 25 F -0.18 -1.25 17.30 44.97 0.78 -0.47 16 26 F -0.18 -0.98 16.46 44.97 0.74 -0.24 16 27 F -0.18 -1.01 16.46 44.97 0.74 -0.27 16 28 C -0.08 0.00 9.06 22.27 0.20 0.20 16 29 C -0.14 0.56 7.25 31.12 0.23 0.79 16 30 C 0.17 0.43 6.72 22.89 0.15 0.59 16 31 O -0.49 -2.29 11.55 -68.55 -0.79 -3.08 16 32 C -0.15 0.34 9.96 22.30 0.22 0.57 16 33 C -0.04 0.16 9.54 22.55 0.22 0.37 16 34 O -0.18 -0.51 8.80 -6.51 -0.06 -0.56 16 35 H 0.40 -3.58 8.74 -74.06 -0.65 -4.23 16 36 H 0.13 -1.02 7.96 -2.38 -0.02 -1.03 16 37 H -0.27 0.03 7.11 99.48 0.71 0.74 16 38 H -0.30 -1.64 7.11 99.48 0.71 -0.94 16 39 H 0.16 -0.26 8.06 -2.91 -0.02 -0.28 16 40 H 0.18 -1.04 7.25 -2.91 -0.02 -1.06 16 41 H 0.15 -0.56 6.24 -2.91 -0.02 -0.58 16 42 H 0.41 -2.23 6.73 -92.71 -0.62 -2.85 16 43 H 0.11 -0.88 7.73 -2.39 -0.02 -0.90 16 44 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 45 H 0.15 -1.40 6.65 -2.91 -0.02 -1.42 16 46 H 0.16 -1.38 8.06 -2.91 -0.02 -1.41 16 47 H 0.14 -0.37 7.61 -2.91 -0.02 -0.39 16 48 H 0.14 -0.19 7.60 -2.91 -0.02 -0.21 16 49 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 50 H 0.11 -0.64 6.31 -2.39 -0.02 -0.66 16 51 H 0.41 -1.01 9.06 -74.06 -0.67 -1.68 16 52 H 0.16 -1.08 8.06 -2.91 -0.02 -1.10 16 53 H 0.17 -1.50 6.96 -2.91 -0.02 -1.52 16 Total: 0.00 -26.40 460.72 2.49 -23.90 By element: Atomic # 1 Polarization: -20.02 SS G_CDS: -0.85 Total: -20.87 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 3.70 Total: 11.67 kcal Atomic # 7 Polarization: 0.69 SS G_CDS: -2.31 Total: -1.62 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -2.51 Total: -12.21 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 2.26 Total: -0.99 kcal Atomic # 14 Polarization: -2.09 SS G_CDS: 2.20 Total: 0.11 kcal Total: -26.40 2.49 -23.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_13259648.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.361 kcal (2) G-P(sol) polarization free energy of solvation -26.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds