Wall clock time and date at job start Tue Mar 9 2021 13:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.46631 * 2 1 4 4 C 1.50701 * 109.47211 * 119.99878 * 2 1 3 5 5 C 1.38354 * 120.34899 * 65.00234 * 4 2 1 6 6 C 1.40017 * 118.29016 * 180.02562 * 5 4 2 7 7 C 1.47838 * 120.56117 * 179.97438 * 6 5 4 8 8 O 1.21552 * 120.00066 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00323 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00225 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.85053 * 336.18969 * 10 9 7 12 12 C 1.53780 * 113.61853 * 107.50117 * 10 9 7 13 13 C 1.53781 * 87.08206 * 89.11435 * 12 10 9 14 14 H 1.08997 * 113.61758 * 270.88363 * 13 12 10 15 15 C 1.50702 * 113.61440 * 139.98340 * 13 12 10 16 16 C 1.38220 * 119.99684 * 322.22991 * 15 13 12 17 17 C 1.38257 * 119.99684 * 179.78856 * 16 15 13 18 18 C 1.38212 * 120.00062 * 0.46194 * 17 16 15 19 19 C 1.38265 * 119.99748 * 359.77093 * 18 17 16 20 20 C 1.50702 * 119.99526 * 180.02562 * 19 18 17 21 21 F 1.39906 * 109.46889 * 270.01719 * 20 19 18 22 22 F 1.39896 * 109.47587 * 30.01917 * 20 19 18 23 23 F 1.39896 * 109.47040 * 150.02273 * 20 19 18 24 24 C 1.38209 * 119.99901 * 0.02562 * 19 18 17 25 25 C 1.53780 * 113.61448 * 204.99893 * 10 9 7 26 26 C 1.39526 * 118.88290 * 0.02562 * 6 5 4 27 27 N 1.31695 * 120.56541 * 0.25732 * 26 6 5 28 28 C 1.31929 * 121.87667 * 359.47319 * 27 26 6 29 29 H 0.96707 * 114.00116 * 299.99442 * 1 2 3 30 30 H 1.08992 * 109.47198 * 240.00243 * 2 1 3 31 31 H 1.48491 * 110.00130 * 299.99880 * 3 2 1 32 32 H 1.48499 * 110.00414 * 61.32220 * 3 2 1 33 33 H 1.08004 * 120.85655 * 359.97438 * 5 4 2 34 34 H 0.97005 * 119.99753 * 359.97438 * 9 7 6 35 35 H 1.08997 * 113.61812 * 203.66499 * 12 10 9 36 36 H 1.09001 * 113.61035 * 334.56752 * 12 10 9 37 37 H 1.08001 * 120.00194 * 0.02562 * 16 15 13 38 38 H 1.08003 * 120.00122 * 180.25432 * 17 16 15 39 39 H 1.08002 * 120.00400 * 179.79141 * 18 17 16 40 40 H 1.08002 * 119.99357 * 179.97438 * 24 19 18 41 41 H 1.09004 * 113.61976 * 25.43101 * 25 10 9 42 42 H 1.09003 * 113.61583 * 156.33380 * 25 10 9 43 43 H 1.08002 * 119.71532 * 179.97438 * 26 6 5 44 44 H 1.07999 * 119.46039 * 180.25083 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6887 -2.0611 1.4059 6 6 2.1747 -2.6776 2.5653 7 6 1.9438 -4.1182 2.8040 8 8 1.3278 -4.7780 1.9899 9 7 2.4162 -4.7000 3.9241 10 6 2.1878 -6.1276 4.1603 11 1 1.3205 -6.5120 3.6236 12 6 3.4502 -6.9896 3.9924 13 6 3.7283 -6.7330 5.4829 14 1 4.3195 -5.8363 5.6688 15 6 4.2497 -7.9417 6.2165 16 6 3.7581 -9.1980 5.9156 17 6 4.2396 -10.3074 6.5856 18 6 5.2056 -10.1592 7.5629 19 6 5.6938 -8.9019 7.8672 20 6 6.7476 -8.7404 8.9325 21 9 6.1306 -8.5450 10.1728 22 9 7.5407 -9.8917 8.9823 23 9 7.5495 -7.6344 8.6312 24 6 5.2155 -7.7934 7.1945 25 6 2.2145 -6.5180 5.6475 26 6 2.8798 -1.9091 3.4922 27 7 3.0804 -0.6245 3.2827 28 6 2.6387 -0.0183 2.1974 29 1 -0.3934 0.4417 0.7651 30 1 1.7923 -0.5138 -0.8899 31 1 1.5613 2.4679 -1.2084 32 1 1.5878 2.4586 1.2242 33 1 1.1378 -2.6254 0.6679 34 1 2.9081 -4.1735 4.5736 35 1 3.2386 -8.0335 3.7611 36 1 4.1937 -6.5500 3.3275 37 1 3.0006 -9.3134 5.1545 38 1 3.8584 -11.2895 6.3477 39 1 5.5793 -11.0254 8.0887 40 1 5.5967 -6.8113 7.4326 41 1 1.9605 -5.6978 6.3190 42 1 1.6651 -7.4331 5.8687 43 1 3.2603 -2.3708 4.3914 44 1 2.8288 1.0363 2.0634 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_13287814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:32 Heat of formation + Delta-G solvation = -117.885874 kcal Electronic energy + Delta-G solvation = -33003.313943 eV Core-core repulsion = 27859.317198 eV Total energy + Delta-G solvation = -5143.996745 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.118 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -51.22581 -48.75062 -48.70040 -42.06221 -41.34746 -40.26017 -38.89600 -38.07672 -34.97768 -33.79952 -33.21963 -32.73117 -31.86720 -27.31664 -27.15947 -26.82994 -26.64210 -25.33305 -23.88609 -23.42736 -22.60310 -21.83831 -20.45704 -19.55979 -19.44422 -19.31267 -18.98290 -18.12245 -17.95746 -17.73516 -17.32796 -16.91221 -16.52013 -16.34765 -16.18788 -16.00573 -15.82243 -15.57098 -15.54237 -15.20286 -15.16267 -14.98655 -14.86318 -14.79412 -14.63423 -14.45506 -14.40806 -14.28998 -14.15058 -13.74293 -13.47219 -13.42397 -13.24748 -12.92046 -12.81091 -12.39789 -12.10137 -11.89248 -11.77615 -11.46065 -11.26470 -11.10002 -10.70743 -10.57342 -10.41463 -10.21290 -10.11277 -9.78993 -4.94448 -0.58553 -0.08171 -0.03597 0.23683 1.21937 1.56951 1.61852 1.63023 1.88425 1.97202 2.43472 2.61413 2.68416 2.96306 3.09546 3.32579 3.35626 3.39720 3.43548 3.63088 3.64412 3.67440 3.71636 3.75779 3.85117 3.94524 4.07990 4.09280 4.10646 4.24808 4.26542 4.39790 4.53430 4.62861 4.65609 4.78095 4.81088 4.84116 4.90273 4.94107 4.95347 5.03761 5.12307 5.17884 5.30940 5.32616 5.41800 5.59790 5.78818 6.34354 6.40586 6.64710 7.02437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.082 4.082 3 Si 0.774 3.226 4 C -0.173 4.173 5 C -0.001 4.001 6 C -0.197 4.197 7 C 0.568 3.432 8 O -0.572 6.572 9 N -0.692 5.692 10 C 0.113 3.887 11 H 0.091 0.909 12 C -0.141 4.141 13 C -0.068 4.068 14 H 0.114 0.886 15 C -0.073 4.073 16 C -0.086 4.086 17 C -0.118 4.118 18 C -0.087 4.087 19 C -0.195 4.195 20 C 0.506 3.494 21 F -0.184 7.184 22 F -0.183 7.183 23 F -0.181 7.181 24 C -0.076 4.076 25 C -0.124 4.124 26 C 0.148 3.852 27 N -0.494 5.494 28 C 0.128 3.872 29 H 0.388 0.612 30 H 0.129 0.871 31 H -0.299 1.299 32 H -0.271 1.271 33 H 0.137 0.863 34 H 0.416 0.584 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.192 0.808 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.035 0.893 0.806 1.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.191 4.191 3 Si 0.677 3.323 4 C -0.175 4.175 5 C -0.028 4.028 6 C -0.202 4.202 7 C 0.355 3.645 8 O -0.452 6.452 9 N -0.344 5.344 10 C 0.008 3.992 11 H 0.109 0.891 12 C -0.179 4.179 13 C -0.086 4.086 14 H 0.133 0.867 15 C -0.073 4.073 16 C -0.103 4.103 17 C -0.136 4.136 18 C -0.105 4.105 19 C -0.196 4.196 20 C 0.452 3.548 21 F -0.165 7.165 22 F -0.164 7.164 23 F -0.163 7.163 24 C -0.094 4.094 25 C -0.162 4.162 26 C -0.011 4.011 27 N -0.202 5.202 28 C -0.028 4.028 29 H 0.237 0.763 30 H 0.147 0.853 31 H -0.227 1.227 32 H -0.197 1.197 33 H 0.155 0.845 34 H 0.254 0.746 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.170 0.830 38 H 0.173 0.827 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.108 0.892 42 H 0.125 0.875 43 H 0.209 0.791 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 0.973 1.417 0.376 1.760 hybrid contribution -1.055 -0.607 0.359 1.270 sum -0.083 0.810 0.735 1.097 Atomic orbital electron populations 1.86620 1.18255 1.80437 1.50207 1.25268 0.83610 1.12483 0.97720 0.94039 0.89905 0.71049 0.77272 1.21343 1.02000 0.94753 0.99432 1.21662 0.92076 0.93935 0.95087 1.20991 1.05775 0.94613 0.98829 1.18170 0.78129 0.86575 0.81581 1.90803 1.42492 1.65496 1.46430 1.45453 1.56640 1.10352 1.21915 1.21921 0.99065 0.80030 0.98198 0.89133 1.23582 0.97390 1.01345 0.95617 1.21653 0.96663 0.95860 0.94464 0.86745 1.19802 0.95850 0.95610 0.96018 1.21583 0.98619 0.91579 0.98542 1.21458 0.96193 1.00679 0.95261 1.21181 0.96136 0.95734 0.97425 1.20005 1.01455 0.97514 1.00607 1.18523 0.81295 0.73462 0.81523 1.93221 1.82701 1.94897 1.45698 1.93183 1.76152 1.50426 1.96653 1.93183 1.75657 1.54357 1.93065 1.21007 0.95729 0.98048 0.94623 1.23415 0.94816 1.03617 0.94371 1.23461 0.90940 0.89046 0.97628 1.67822 1.20115 1.10991 1.21250 1.23261 0.90683 1.00998 0.87838 0.76288 0.85342 1.22669 1.19717 0.84479 0.74573 0.87839 0.91160 0.82994 0.82711 0.84262 0.83971 0.89201 0.87528 0.79120 0.80180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.62 12.84 -148.98 -1.91 -2.53 16 2 C -0.08 0.22 2.82 71.24 0.20 0.42 16 3 Si 0.77 -3.95 29.91 68.60 2.05 -1.89 16 4 C -0.17 0.29 5.35 -19.81 -0.11 0.19 16 5 C 0.00 0.00 9.38 22.73 0.21 0.21 16 6 C -0.20 0.00 5.89 -19.99 -0.12 -0.12 16 7 C 0.57 1.27 7.78 86.78 0.68 1.94 16 8 O -0.57 -6.35 16.02 -3.88 -0.06 -6.41 16 9 N -0.69 3.51 5.22 -442.92 -2.31 1.20 16 10 C 0.11 -0.58 4.32 45.52 0.20 -0.38 16 11 H 0.09 -0.06 7.46 -2.39 -0.02 -0.08 16 12 C -0.14 0.92 7.25 31.12 0.23 1.15 16 13 C -0.07 0.58 3.86 -11.01 -0.04 0.54 16 14 H 0.11 -1.25 8.10 -2.39 -0.02 -1.27 16 15 C -0.07 0.38 5.29 -19.87 -0.11 0.27 16 16 C -0.09 0.52 8.60 22.27 0.19 0.71 16 17 C -0.12 0.57 10.05 22.27 0.22 0.80 16 18 C -0.09 0.13 9.40 22.27 0.21 0.34 16 19 C -0.19 -0.10 5.45 -19.86 -0.11 -0.20 16 20 C 0.51 1.65 3.36 71.24 0.24 1.89 16 21 F -0.18 -0.94 17.30 44.97 0.78 -0.16 16 22 F -0.18 -0.87 16.46 44.97 0.74 -0.13 16 23 F -0.18 -0.74 16.46 44.97 0.74 0.00 16 24 C -0.08 0.17 9.06 22.26 0.20 0.38 16 25 C -0.12 1.13 7.29 31.12 0.23 1.36 16 26 C 0.15 -0.55 10.71 85.02 0.91 0.36 16 27 N -0.49 0.43 10.35 -194.75 -2.01 -1.59 16 28 C 0.13 -0.35 9.84 84.71 0.83 0.49 16 29 H 0.39 -1.88 8.70 -74.05 -0.64 -2.53 16 30 H 0.13 -0.51 7.96 -2.39 -0.02 -0.53 16 31 H -0.30 -0.93 7.11 99.48 0.71 -0.22 16 32 H -0.27 0.65 7.01 99.48 0.70 1.35 16 33 H 0.14 0.60 7.74 -2.91 -0.02 0.58 16 34 H 0.42 -4.71 6.77 -92.70 -0.63 -5.34 16 35 H 0.10 -0.79 6.32 -2.39 -0.02 -0.81 16 36 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H 0.15 -1.53 6.67 -2.91 -0.02 -1.55 16 38 H 0.16 -1.41 8.06 -2.91 -0.02 -1.43 16 39 H 0.14 -0.44 7.61 -2.91 -0.02 -0.46 16 40 H 0.14 -0.65 7.60 -2.91 -0.02 -0.67 16 41 H 0.09 -0.93 8.14 -2.38 -0.02 -0.95 16 42 H 0.11 -1.03 7.71 -2.39 -0.02 -1.05 16 43 H 0.19 -2.16 6.42 -2.91 -0.02 -2.18 16 44 H 0.18 -1.29 4.84 -2.91 -0.01 -1.30 16 Total: 0.00 -21.86 382.64 1.94 -19.92 By element: Atomic # 1 Polarization: -18.62 SS G_CDS: -0.14 Total: -18.76 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 4.07 Total: 10.35 kcal Atomic # 7 Polarization: 3.94 SS G_CDS: -4.33 Total: -0.38 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -1.98 Total: -8.94 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 2.26 Total: -0.29 kcal Atomic # 14 Polarization: -3.95 SS G_CDS: 2.05 Total: -1.89 kcal Total: -21.86 1.94 -19.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_13287814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.968 kcal (2) G-P(sol) polarization free energy of solvation -21.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds