Wall clock time and date at job start Tue Mar 9 2021 13:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36413 * 125.80394 * 2 1 4 4 C 1.47379 * 127.19182 * 0.02562 * 3 2 1 5 5 O 1.21612 * 120.00064 * 359.71186 * 4 3 2 6 6 N 1.34775 * 120.00167 * 179.71201 * 4 3 2 7 7 C 1.46497 * 120.00126 * 180.02562 * 6 4 3 8 8 H 1.09002 * 112.84935 * 25.32833 * 7 6 4 9 9 C 1.53786 * 113.61643 * 156.52505 * 7 6 4 10 10 C 1.53782 * 87.07909 * 89.19525 * 9 7 6 11 11 H 1.08994 * 113.62059 * 270.80464 * 10 9 7 12 12 C 1.50702 * 113.61118 * 139.98023 * 10 9 7 13 13 C 1.38215 * 120.00046 * 120.00612 * 12 10 9 14 14 C 1.38250 * 119.99869 * 180.02562 * 13 12 10 15 15 C 1.50703 * 119.99755 * 179.97438 * 14 13 12 16 16 F 1.39905 * 109.47146 * 89.99539 * 15 14 13 17 17 F 1.39898 * 109.47409 * 209.99389 * 15 14 13 18 18 F 1.39892 * 109.47192 * 329.99919 * 15 14 13 19 19 C 1.38218 * 120.00406 * 359.97045 * 14 13 12 20 20 C 1.38255 * 119.99938 * 359.97438 * 19 14 13 21 21 C 1.38217 * 119.99791 * 359.80578 * 20 19 14 22 22 C 1.53781 * 113.61305 * 254.13352 * 7 6 4 23 23 C 1.47016 * 105.61685 * 179.75727 * 3 2 1 24 24 C 1.34184 * 105.95374 * 0.22355 * 23 3 2 25 25 C 1.50700 * 125.43688 * 180.02562 * 24 23 3 26 26 O 1.42904 * 109.47198 * 299.99727 * 25 24 23 27 27 Si 1.86302 * 109.47096 * 179.97438 * 25 24 23 28 28 O 1.33659 * 125.79756 * 180.14326 * 2 1 3 29 29 H 1.08998 * 109.47630 * 89.99772 * 1 2 3 30 30 H 1.09001 * 109.46970 * 210.00106 * 1 2 3 31 31 H 1.09005 * 109.46432 * 329.99752 * 1 2 3 32 32 H 0.97006 * 119.99816 * 359.97438 * 6 4 3 33 33 H 1.08993 * 113.61491 * 203.74894 * 9 7 6 34 34 H 1.09000 * 113.61395 * 334.56747 * 9 7 6 35 35 H 1.08001 * 119.99528 * 359.97201 * 13 12 10 36 36 H 1.08003 * 119.99684 * 179.97438 * 19 14 13 37 37 H 1.07995 * 120.00256 * 179.97438 * 20 19 14 38 38 H 1.08002 * 120.00141 * 180.23078 * 21 20 19 39 39 H 1.09001 * 113.61695 * 25.34675 * 22 7 6 40 40 H 1.08997 * 113.61223 * 156.25258 * 22 7 6 41 41 H 1.08004 * 127.02643 * 180.24460 * 23 3 2 42 42 H 1.09003 * 109.47439 * 60.00071 * 25 24 23 43 43 H 0.96698 * 114.00199 * 300.00479 * 26 25 24 44 44 H 1.48507 * 109.99827 * 58.68119 * 27 25 24 45 45 H 1.48498 * 109.99893 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1063 0.0000 4 6 1.8740 2.5157 0.0005 5 8 0.6891 2.7892 -0.0043 6 7 2.7931 3.5015 0.0063 7 6 2.3647 4.9024 0.0074 8 1 1.3709 5.0408 0.4333 9 6 3.4181 5.8684 0.5750 10 6 3.9685 5.9843 -0.8562 11 1 4.7273 5.2389 -1.0940 12 6 4.3847 7.3833 -1.2314 13 6 5.6933 7.6413 -1.5940 14 6 6.0752 8.9248 -1.9376 15 6 7.5021 9.2061 -2.3324 16 9 7.6440 9.0448 -3.7148 17 9 7.8335 10.5187 -1.9796 18 9 8.3535 8.3159 -1.6693 19 6 5.1483 9.9499 -1.9192 20 6 3.8391 9.6918 -1.5576 21 6 3.4562 8.4077 -1.2184 22 6 2.5585 5.6069 -1.3457 23 6 3.6849 0.5990 0.0060 24 6 3.5858 -0.7392 0.0039 25 6 4.7458 -1.7012 0.0089 26 8 5.5486 -1.4854 -1.1535 27 14 4.1026 -3.4496 0.0043 28 8 2.2888 -1.0841 -0.0027 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3632 0.8900 0.5139 32 1 3.7383 3.2833 0.0105 33 1 2.9969 6.7980 0.9576 34 1 4.1102 5.3982 1.2736 35 1 6.4176 6.8403 -1.6080 36 1 5.4468 10.9527 -2.1873 37 1 3.1149 10.4928 -1.5428 38 1 2.4326 8.2053 -0.9396 39 1 2.5585 4.9256 -2.1967 40 1 1.9019 6.4649 -1.4892 41 1 4.5928 1.1839 0.0113 42 1 5.3489 -1.5387 0.9022 43 1 5.0757 -1.6129 -1.9873 44 1 3.2523 -3.6748 -1.1923 45 1 5.2368 -4.4081 0.0085 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_13308374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:36 Heat of formation + Delta-G solvation = -143.226689 kcal Electronic energy + Delta-G solvation = -34102.698497 eV Core-core repulsion = 28832.572750 eV Total energy + Delta-G solvation = -5270.125746 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.122 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -51.24903 -48.77115 -48.72549 -43.77094 -41.59427 -40.35864 -38.87771 -38.15849 -34.86227 -34.02441 -33.12612 -32.81000 -32.01410 -29.40921 -27.17539 -26.72882 -26.65599 -25.62746 -24.27463 -23.44486 -22.75732 -22.12134 -20.88032 -20.22903 -19.58257 -19.43737 -19.08316 -18.93101 -18.01405 -17.72265 -17.36102 -17.05445 -16.78759 -16.43417 -16.15777 -15.94756 -15.89220 -15.64250 -15.58473 -15.49274 -15.18347 -15.01181 -14.96091 -14.88595 -14.72614 -14.56805 -14.28728 -14.21075 -14.08853 -13.91487 -13.82060 -13.76412 -13.42297 -13.23348 -12.95773 -12.91047 -12.82068 -12.41446 -12.18694 -11.89408 -11.77948 -11.27361 -11.18051 -10.95777 -10.74182 -10.23148 -10.11441 -9.81148 -9.57791 -4.94380 -0.10047 0.20938 0.23141 0.81788 1.17795 1.42122 1.59573 1.69753 1.91394 2.11046 2.22756 2.41863 2.66102 2.94191 3.16488 3.33289 3.38182 3.42727 3.62657 3.66037 3.74701 3.77545 3.83240 3.93435 4.06321 4.08822 4.11807 4.22855 4.38067 4.39137 4.47373 4.59401 4.61205 4.64383 4.67185 4.76423 4.77772 4.87194 4.89366 4.94539 5.01633 5.11204 5.15530 5.17729 5.22191 5.30774 5.43674 5.61468 5.77042 5.88684 6.33162 6.47039 7.15061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.086 3.914 3 C -0.269 4.269 4 C 0.592 3.408 5 O -0.572 6.572 6 N -0.696 5.696 7 C 0.116 3.884 8 H 0.093 0.907 9 C -0.123 4.123 10 C -0.068 4.068 11 H 0.107 0.893 12 C -0.073 4.073 13 C -0.078 4.078 14 C -0.194 4.194 15 C 0.506 3.494 16 F -0.185 7.185 17 F -0.181 7.181 18 F -0.182 7.182 19 C -0.086 4.086 20 C -0.117 4.117 21 C -0.085 4.085 22 C -0.141 4.141 23 C -0.147 4.147 24 C -0.058 4.058 25 C -0.032 4.032 26 O -0.533 6.533 27 Si 0.769 3.231 28 O -0.172 6.172 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.412 0.588 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.177 0.823 42 H 0.158 0.842 43 H 0.390 0.610 44 H -0.296 1.296 45 H -0.283 1.283 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.155 -0.926 3.123 3.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.032 3.968 3 C -0.274 4.274 4 C 0.381 3.619 5 O -0.453 6.453 6 N -0.347 5.347 7 C 0.011 3.989 8 H 0.111 0.889 9 C -0.161 4.161 10 C -0.087 4.087 11 H 0.125 0.875 12 C -0.073 4.073 13 C -0.096 4.096 14 C -0.196 4.196 15 C 0.452 3.548 16 F -0.166 7.166 17 F -0.163 7.163 18 F -0.163 7.163 19 C -0.104 4.104 20 C -0.134 4.134 21 C -0.102 4.102 22 C -0.179 4.179 23 C -0.166 4.166 24 C -0.106 4.106 25 C -0.141 4.141 26 O -0.342 6.342 27 Si 0.674 3.326 28 O -0.070 6.070 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.249 0.751 33 H 0.127 0.873 34 H 0.105 0.895 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.083 0.917 40 H 0.124 0.876 41 H 0.195 0.805 42 H 0.175 0.825 43 H 0.240 0.760 44 H -0.222 1.222 45 H -0.210 1.210 Dipole moment (debyes) X Y Z Total from point charges -2.583 -1.649 3.134 4.383 hybrid contribution 1.239 0.691 -1.501 2.065 sum -1.344 -0.958 1.633 2.322 Atomic orbital electron populations 1.20715 0.82596 1.05768 1.05051 1.23240 0.94784 0.83005 0.95743 1.21205 0.94203 0.93497 1.18455 1.17328 0.85202 0.84335 0.75002 1.90758 1.17891 1.84478 1.52156 1.45376 1.09923 1.04977 1.74377 1.21883 0.99603 0.79772 0.97651 0.88902 1.23390 0.97298 0.99812 0.95596 1.21642 0.97379 0.92581 0.97068 0.87490 1.19802 0.92362 0.96209 0.98926 1.20987 0.97248 0.94941 0.96449 1.20000 0.91441 0.97622 1.10511 1.18519 0.87891 0.73872 0.74515 1.93220 1.96596 1.95241 1.31534 1.93184 1.93849 1.37486 1.91766 1.93181 1.73769 1.68603 1.80735 1.21194 0.93508 0.98737 0.96959 1.21473 0.95445 0.98117 0.98405 1.21590 1.00691 0.92032 0.95929 1.23609 0.96157 1.00926 0.97227 1.22785 0.96393 0.93617 1.03787 1.22828 0.82837 0.95962 1.08999 1.24477 0.90000 1.06933 0.92718 1.86642 1.39315 1.91698 1.16508 0.93541 0.78858 0.72268 0.87963 1.83682 1.16809 1.35035 1.71428 0.88655 0.88052 0.88299 0.75098 0.87309 0.89545 0.84302 0.84114 0.82496 0.82861 0.91685 0.87639 0.80547 0.82486 0.76006 1.22240 1.20989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.05 9.89 71.24 0.70 0.75 16 2 C 0.09 0.22 7.37 25.26 0.19 0.40 16 3 C -0.27 -0.73 6.31 -18.99 -0.12 -0.85 16 4 C 0.59 2.60 7.81 86.65 0.68 3.27 16 5 O -0.57 -6.04 14.47 -4.07 -0.06 -6.10 16 6 N -0.70 1.35 5.26 -443.34 -2.33 -0.98 16 7 C 0.12 -0.38 4.30 45.52 0.20 -0.18 16 8 H 0.09 0.02 7.50 -2.39 -0.02 0.01 16 9 C -0.12 0.89 7.29 31.12 0.23 1.12 16 10 C -0.07 0.43 3.87 -10.95 -0.04 0.39 16 11 H 0.11 -0.80 8.09 -2.39 -0.02 -0.82 16 12 C -0.07 0.26 5.29 -19.86 -0.11 0.16 16 13 C -0.08 0.06 9.06 22.27 0.20 0.26 16 14 C -0.19 -0.30 5.45 -19.87 -0.11 -0.40 16 15 C 0.51 2.12 3.36 71.24 0.24 2.36 16 16 F -0.18 -1.16 17.30 44.97 0.78 -0.38 16 17 F -0.18 -0.95 16.46 44.97 0.74 -0.21 16 18 F -0.18 -0.92 16.46 44.97 0.74 -0.18 16 19 C -0.09 0.08 9.40 22.27 0.21 0.29 16 20 C -0.12 0.50 10.05 22.27 0.22 0.73 16 21 C -0.08 0.43 8.63 22.27 0.19 0.63 16 22 C -0.14 0.64 7.27 31.18 0.23 0.87 16 23 C -0.15 0.17 10.46 23.65 0.25 0.42 16 24 C -0.06 0.05 6.20 24.76 0.15 0.21 16 25 C -0.03 0.12 2.97 71.24 0.21 0.33 16 26 O -0.53 0.86 12.86 -148.98 -1.92 -1.05 16 27 Si 0.77 -2.22 32.09 68.60 2.20 -0.02 16 28 O -0.17 -0.24 8.89 4.42 0.04 -0.20 16 29 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.10 0.23 6.49 -2.38 -0.02 0.22 16 32 H 0.41 -2.68 7.88 -92.70 -0.73 -3.41 16 33 H 0.11 -0.92 7.73 -2.39 -0.02 -0.94 16 34 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 35 H 0.14 -0.35 7.60 -2.91 -0.02 -0.37 16 36 H 0.14 -0.39 7.60 -2.91 -0.02 -0.41 16 37 H 0.16 -1.39 8.06 -2.91 -0.02 -1.42 16 38 H 0.15 -1.44 6.65 -2.91 -0.02 -1.46 16 39 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.11 -0.67 6.31 -2.39 -0.02 -0.69 16 41 H 0.18 -1.04 7.74 -2.91 -0.02 -1.07 16 42 H 0.16 -1.22 7.96 -2.39 -0.02 -1.24 16 43 H 0.39 -2.43 8.70 -74.06 -0.64 -3.08 16 44 H -0.30 -1.08 7.11 99.48 0.71 -0.37 16 45 H -0.28 -0.82 7.11 99.48 0.71 -0.11 16 Total: 0.00 -18.51 393.87 3.46 -15.05 By element: Atomic # 1 Polarization: -16.41 SS G_CDS: -0.25 Total: -16.66 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 3.52 Total: 10.75 kcal Atomic # 7 Polarization: 1.35 SS G_CDS: -2.33 Total: -0.98 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -1.94 Total: -7.36 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 2.26 Total: -0.77 kcal Atomic # 14 Polarization: -2.22 SS G_CDS: 2.20 Total: -0.02 kcal Total: -18.51 3.46 -15.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_13308374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.178 kcal (2) G-P(sol) polarization free energy of solvation -18.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds