Wall clock time and date at job start Tue Mar 9 2021 13:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37789 * 119.84651 * 2 1 4 4 C 1.39711 * 119.90210 * 179.97438 * 3 2 1 5 5 C 1.47541 * 120.18596 * 179.97438 * 4 3 2 6 6 O 1.21592 * 119.99913 * 179.97438 * 5 4 3 7 7 N 1.34774 * 120.00128 * 359.97438 * 5 4 3 8 8 C 1.46503 * 119.99984 * 179.97438 * 7 5 4 9 9 H 1.09003 * 112.85127 * 336.20479 * 8 7 5 10 10 C 1.53781 * 113.61378 * 107.50505 * 8 7 5 11 11 C 1.53780 * 87.08247 * 89.11594 * 10 8 7 12 12 H 1.08990 * 113.61379 * 270.88767 * 11 10 8 13 13 C 1.50696 * 113.61217 * 139.98011 * 11 10 8 14 14 C 1.38221 * 119.99905 * 142.23626 * 13 11 10 15 15 C 1.38260 * 119.99729 * 179.74276 * 14 13 11 16 16 C 1.50706 * 119.99479 * 180.26927 * 15 14 13 17 17 F 1.39898 * 109.46884 * 180.27751 * 16 15 14 18 18 F 1.39899 * 109.47248 * 300.27541 * 16 15 14 19 19 F 1.39897 * 109.47093 * 60.27977 * 16 15 14 20 20 C 1.38205 * 120.00107 * 0.54736 * 15 14 13 21 21 C 1.38265 * 120.00177 * 359.70487 * 20 15 14 22 22 C 1.38208 * 119.99802 * 0.02562 * 21 20 15 23 23 C 1.53782 * 113.61824 * 205.00107 * 8 7 5 24 24 C 1.40138 * 119.62311 * 359.97438 * 4 3 2 25 25 O 1.35650 * 120.15298 * 179.97438 * 24 4 3 26 26 C 1.38705 * 119.69614 * 0.02562 * 24 4 3 27 27 C 1.50696 * 119.95936 * 180.02562 * 26 24 4 28 28 O 1.42901 * 109.46825 * 284.99883 * 27 26 24 29 29 Si 1.86296 * 109.47389 * 164.99438 * 27 26 24 30 30 C 1.38062 * 120.08303 * 359.74323 * 26 24 4 31 31 H 1.09002 * 109.47152 * 90.00308 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00408 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.00389 * 1 2 3 34 34 H 1.07995 * 120.04926 * 359.97438 * 3 2 1 35 35 H 0.96993 * 120.00099 * 0.02562 * 7 5 4 36 36 H 1.09001 * 113.61515 * 203.67055 * 10 8 7 37 37 H 1.09003 * 113.61309 * 334.56422 * 10 8 7 38 38 H 1.07995 * 119.99510 * 359.97438 * 14 13 11 39 39 H 1.08004 * 119.99958 * 179.72178 * 20 15 14 40 40 H 1.07999 * 119.99957 * 179.97438 * 21 20 15 41 41 H 1.07999 * 120.00076 * 179.97438 * 22 21 20 42 42 H 1.09001 * 113.60999 * 25.43718 * 23 8 7 43 43 H 1.08998 * 113.61134 * 156.33335 * 23 8 7 44 44 H 0.96702 * 113.99429 * 89.99842 * 25 24 4 45 45 H 1.09004 * 109.47203 * 44.99283 * 27 26 24 46 46 H 0.96691 * 113.99940 * 299.99797 * 28 27 26 47 47 H 1.48503 * 110.00052 * 179.97438 * 29 27 26 48 48 H 1.48494 * 110.00282 * 301.32235 * 29 27 26 49 49 H 1.08010 * 119.80220 * 180.27910 * 30 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1951 0.0000 4 6 3.5899 1.1965 0.0005 5 6 4.3305 2.4725 0.0000 6 8 5.5464 2.4698 0.0009 7 7 3.6593 3.6413 -0.0016 8 6 4.3947 4.9083 -0.0016 9 1 5.4017 4.8133 0.4049 10 6 4.3390 5.6529 -1.3459 11 6 3.0613 6.3332 -0.8266 12 1 2.1497 5.7800 -1.0521 13 6 2.9658 7.7933 -1.1868 14 6 1.7438 8.3430 -1.5260 15 6 1.6553 9.6839 -1.8513 16 6 0.3219 10.2844 -2.2152 17 9 0.4865 11.6424 -2.5084 18 9 -0.1965 9.6252 -3.3350 19 9 -0.5621 10.1434 -1.1402 20 6 2.7906 10.4720 -1.8483 21 6 4.0139 9.9211 -1.5140 22 6 4.1014 8.5820 -1.1835 23 6 3.5989 6.0826 0.5922 24 6 4.2838 -0.0211 0.0016 25 8 5.6402 -0.0323 0.0016 26 6 3.5772 -1.2146 0.0016 27 6 4.3173 -2.5273 0.0034 28 8 4.8564 -2.7718 -1.2973 29 14 3.1440 -3.9012 0.4577 30 6 2.1966 -1.2016 0.0059 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 1.6511 2.1294 -0.0004 35 1 2.6894 3.6435 -0.0020 36 1 5.1696 6.3421 -1.4982 37 1 4.1687 4.9985 -2.2008 38 1 0.8576 7.7258 -1.5333 39 1 2.7222 11.5185 -2.1068 40 1 4.9010 10.5369 -1.5121 41 1 5.0570 8.1515 -0.9228 42 1 2.8311 5.7750 1.3021 43 1 4.2273 6.8892 0.9699 44 1 6.0334 -0.0347 0.8851 45 1 5.1280 -2.4864 0.7309 46 1 4.1902 -2.8208 -1.9963 47 1 3.8617 -5.2013 0.4623 48 1 2.5522 -3.6424 1.7948 49 1 1.6510 -2.1337 0.0104 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_13422088.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:49 Heat of formation + Delta-G solvation = -175.797211 kcal Electronic energy + Delta-G solvation = -37880.505486 eV Core-core repulsion = 32325.203616 eV Total energy + Delta-G solvation = -5555.301870 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.138 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -51.23131 -48.76055 -48.70011 -41.95861 -41.25794 -40.10651 -38.84066 -38.03830 -37.61634 -34.84197 -33.11884 -32.99476 -32.67792 -31.76290 -27.51613 -27.16222 -26.83973 -26.67202 -26.55499 -24.91451 -23.46564 -22.59851 -21.97309 -21.63211 -20.43844 -19.60991 -19.55680 -19.42392 -19.03855 -18.42167 -17.90796 -17.44674 -17.33781 -16.84461 -16.81624 -16.31807 -16.18491 -15.97375 -15.80270 -15.62399 -15.55835 -15.46476 -15.14596 -15.11736 -15.01215 -14.91093 -14.86584 -14.69750 -14.48106 -14.37514 -14.26342 -14.14289 -13.78633 -13.64000 -13.45687 -13.33188 -13.25721 -12.92157 -12.83260 -12.52173 -12.40241 -12.19149 -12.10063 -11.88995 -11.78210 -11.74164 -11.27853 -11.00429 -10.40792 -10.28036 -10.20423 -10.01144 -9.80518 -9.49966 -5.04227 -0.35223 -0.09390 0.07378 0.22235 1.25389 1.61044 1.62439 1.69690 1.92999 2.01852 2.42054 2.55402 2.67531 2.95614 3.15927 3.35341 3.39469 3.42678 3.52592 3.62689 3.63803 3.69834 3.80976 3.83603 3.92953 4.06634 4.08115 4.12799 4.19371 4.23419 4.33565 4.38471 4.49037 4.61509 4.62910 4.64734 4.75179 4.81236 4.84565 4.89107 4.93275 4.94752 4.99236 5.00783 5.10918 5.16283 5.19342 5.28333 5.31276 5.42397 5.43631 5.59781 5.69467 5.77204 6.43591 6.68834 6.75276 7.13909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C -0.062 4.062 4 C -0.182 4.182 5 C 0.558 3.442 6 O -0.564 6.564 7 N -0.696 5.696 8 C 0.114 3.886 9 H 0.086 0.914 10 C -0.143 4.143 11 C -0.065 4.065 12 H 0.114 0.886 13 C -0.073 4.073 14 C -0.074 4.074 15 C -0.194 4.194 16 C 0.507 3.493 17 F -0.182 7.182 18 F -0.183 7.183 19 F -0.182 7.182 20 C -0.088 4.088 21 C -0.118 4.118 22 C -0.087 4.087 23 C -0.122 4.122 24 C 0.160 3.840 25 O -0.491 6.491 26 C -0.160 4.160 27 C -0.075 4.075 28 O -0.555 6.555 29 Si 0.789 3.211 30 C -0.070 4.070 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.160 0.840 35 H 0.414 0.586 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.399 0.601 45 H 0.096 0.904 46 H 0.392 0.608 47 H -0.301 1.301 48 H -0.276 1.276 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 -0.564 1.706 6.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.080 4.080 4 C -0.185 4.185 5 C 0.346 3.654 6 O -0.443 6.443 7 N -0.349 5.349 8 C 0.008 3.992 9 H 0.104 0.896 10 C -0.181 4.181 11 C -0.084 4.084 12 H 0.132 0.868 13 C -0.073 4.073 14 C -0.092 4.092 15 C -0.195 4.195 16 C 0.453 3.547 17 F -0.163 7.163 18 F -0.164 7.164 19 F -0.163 7.163 20 C -0.106 4.106 21 C -0.136 4.136 22 C -0.104 4.104 23 C -0.160 4.160 24 C 0.113 3.887 25 O -0.303 6.303 26 C -0.161 4.161 27 C -0.184 4.184 28 O -0.363 6.363 29 Si 0.694 3.306 30 C -0.088 4.088 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.177 0.823 35 H 0.252 0.748 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.173 0.827 41 H 0.168 0.832 42 H 0.108 0.892 43 H 0.124 0.876 44 H 0.258 0.742 45 H 0.114 0.886 46 H 0.242 0.758 47 H -0.229 1.229 48 H -0.202 1.202 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.385 -1.142 1.991 5.854 hybrid contribution 0.355 0.751 0.448 0.944 sum -5.030 -0.390 2.440 5.604 Atomic orbital electron populations 1.20938 0.87784 1.04641 1.04056 1.20151 0.98237 0.91696 0.99246 1.21441 0.90867 1.00001 0.95719 1.20409 0.95136 0.92447 1.10538 1.18323 0.86891 0.84377 0.75764 1.90813 1.15050 1.87886 1.50553 1.45453 1.10651 1.04189 1.74569 1.21877 0.96866 0.82644 0.97782 0.89558 1.23586 0.98215 0.99119 0.97227 1.21613 0.99332 0.90563 0.96844 0.86809 1.19786 0.92347 0.96147 0.99010 1.20952 0.99259 0.92745 0.96262 1.20001 0.91860 0.96898 1.10766 1.18494 0.86053 0.75793 0.74393 1.93160 1.95574 1.34125 1.93466 1.93212 1.88633 1.80834 1.53740 1.93211 1.71668 1.95498 1.55948 1.21245 0.91768 1.00667 0.96900 1.21462 0.97746 0.95793 0.98581 1.21572 0.99284 0.93585 0.95982 1.23396 0.99964 0.96810 0.95852 1.18589 0.83472 0.90996 0.95610 1.84770 1.15585 1.96093 1.33884 1.20774 0.94935 0.95103 1.05325 1.25273 1.04125 1.00015 0.88970 1.86533 1.38607 1.94229 1.16899 0.93815 0.80969 0.73009 0.82856 1.21317 0.91726 0.99523 0.96210 0.89409 0.90013 0.89892 0.82263 0.74808 0.87993 0.91610 0.84037 0.83974 0.82720 0.83202 0.89163 0.87589 0.74244 0.88635 0.75818 1.22927 1.20247 0.81940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.38 10.00 71.24 0.71 2.09 16 2 C -0.09 0.59 5.87 -19.90 -0.12 0.47 16 3 C -0.06 0.29 9.18 22.52 0.21 0.50 16 4 C -0.18 -0.49 5.89 -20.01 -0.12 -0.61 16 5 C 0.56 3.13 7.76 86.70 0.67 3.80 16 6 O -0.56 -8.21 14.76 16.91 0.25 -7.96 16 7 N -0.70 1.69 5.21 -443.18 -2.31 -0.62 16 8 C 0.11 -0.31 4.32 45.52 0.20 -0.12 16 9 H 0.09 0.18 7.46 -2.39 -0.02 0.16 16 10 C -0.14 0.60 7.25 31.12 0.23 0.82 16 11 C -0.07 0.47 3.86 -11.01 -0.04 0.43 16 12 H 0.11 -1.10 8.09 -2.39 -0.02 -1.12 16 13 C -0.07 0.31 5.29 -19.86 -0.11 0.21 16 14 C -0.07 0.14 9.26 22.27 0.21 0.35 16 15 C -0.19 -0.13 5.37 -19.87 -0.11 -0.24 16 16 C 0.51 1.62 3.32 71.24 0.24 1.86 16 17 F -0.18 -0.80 15.97 44.97 0.72 -0.08 16 18 F -0.18 -0.87 17.23 44.97 0.77 -0.10 16 19 F -0.18 -0.81 17.24 44.97 0.78 -0.03 16 20 C -0.09 0.10 9.43 22.27 0.21 0.31 16 21 C -0.12 0.49 10.05 22.27 0.22 0.72 16 22 C -0.09 0.43 8.61 22.27 0.19 0.63 16 23 C -0.12 0.94 7.29 31.12 0.23 1.17 16 24 C 0.16 0.91 6.69 22.84 0.15 1.06 16 25 O -0.49 -4.94 10.91 -68.73 -0.75 -5.69 16 26 C -0.16 -0.13 5.27 -19.80 -0.10 -0.23 16 27 C -0.08 -0.09 2.38 71.23 0.17 0.08 16 28 O -0.56 -2.21 12.88 -148.98 -1.92 -4.13 16 29 Si 0.79 -2.62 29.91 68.60 2.05 -0.56 16 30 C -0.07 0.34 8.30 22.30 0.19 0.53 16 31 H 0.09 -1.13 8.14 -2.39 -0.02 -1.15 16 32 H 0.08 -1.08 8.08 -2.39 -0.02 -1.10 16 33 H 0.08 -1.08 8.08 -2.38 -0.02 -1.10 16 34 H 0.16 -1.85 6.40 -2.91 -0.02 -1.87 16 35 H 0.41 -3.69 6.73 -92.71 -0.62 -4.32 16 36 H 0.10 -0.54 6.31 -2.39 -0.02 -0.55 16 37 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.14 -0.65 8.05 -2.91 -0.02 -0.67 16 39 H 0.14 -0.40 7.16 -2.91 -0.02 -0.42 16 40 H 0.16 -1.30 8.06 -2.91 -0.02 -1.33 16 41 H 0.15 -1.30 6.66 -2.91 -0.02 -1.32 16 42 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 43 H 0.11 -0.88 7.72 -2.39 -0.02 -0.90 16 44 H 0.40 1.56 9.06 -74.06 -0.67 0.89 16 45 H 0.10 0.33 7.83 -2.39 -0.02 0.31 16 46 H 0.39 -1.92 8.70 -74.06 -0.64 -2.56 16 47 H -0.30 -1.49 7.11 99.48 0.71 -0.78 16 48 H -0.28 -0.05 7.11 99.48 0.71 0.65 16 49 H 0.16 -1.78 5.09 -2.91 -0.01 -1.79 16 Total: 0.00 -27.25 417.64 1.98 -25.26 By element: Atomic # 1 Polarization: -19.10 SS G_CDS: -0.83 Total: -19.93 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 3.22 Total: 13.83 kcal Atomic # 7 Polarization: 1.69 SS G_CDS: -2.31 Total: -0.62 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -2.42 Total: -17.78 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 2.27 Total: -0.21 kcal Atomic # 14 Polarization: -2.62 SS G_CDS: 2.05 Total: -0.56 kcal Total: -27.25 1.98 -25.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_13422088.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.533 kcal (2) G-P(sol) polarization free energy of solvation -27.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds