Wall clock time and date at job start Tue Mar 9 2021 13:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86306 * 109.46869 * 2 1 4 4 C 1.50693 * 109.47240 * 119.99667 * 2 1 3 5 5 C 1.34493 * 125.49646 * 210.29091 * 4 2 1 6 6 C 1.46755 * 106.36967 * 180.12462 * 5 4 2 7 7 C 1.47254 * 126.97008 * 179.88162 * 6 5 4 8 8 O 1.21627 * 119.99923 * 179.68209 * 7 6 5 9 9 N 1.34777 * 120.00279 * 359.67980 * 7 6 5 10 10 C 1.46498 * 119.99874 * 180.02562 * 9 7 6 11 11 H 1.08994 * 112.85455 * 23.80136 * 10 9 7 12 12 C 1.53787 * 113.61479 * 154.99987 * 10 9 7 13 13 C 1.53784 * 87.07999 * 89.11271 * 12 10 9 14 14 H 1.08999 * 113.61330 * 270.80032 * 13 12 10 15 15 C 1.50695 * 113.61455 * 139.98293 * 13 12 10 16 16 C 1.38219 * 120.00215 * 299.97773 * 15 13 12 17 17 C 1.38249 * 120.00323 * 179.97438 * 16 15 13 18 18 C 1.38216 * 120.00123 * 359.74921 * 17 16 15 19 19 C 1.38257 * 119.99550 * 0.52532 * 18 17 16 20 20 C 1.50703 * 119.99919 * 179.74572 * 19 18 17 21 21 F 1.39905 * 109.47157 * 269.72742 * 20 19 18 22 22 F 1.39900 * 109.47159 * 149.73042 * 20 19 18 23 23 F 1.39897 * 109.47274 * 29.72733 * 20 19 18 24 24 C 1.38212 * 120.00117 * 359.47657 * 19 18 17 25 25 C 1.53779 * 87.08245 * 25.43528 * 13 12 10 26 26 C 1.36342 * 106.05642 * 359.61422 * 6 5 4 27 27 C 1.51000 * 126.78988 * 180.24860 * 26 6 5 28 28 C 1.53384 * 108.25239 * 164.33315 * 27 26 6 29 29 C 1.53154 * 109.05119 * 48.45767 * 28 27 26 30 30 C 1.53130 * 109.52355 * 290.42841 * 29 28 27 31 31 N 1.35206 * 108.66267 * 0.25326 * 26 6 5 32 32 H 0.96705 * 113.99613 * 300.00086 * 1 2 3 33 33 H 1.08994 * 109.46980 * 239.99939 * 2 1 3 34 34 H 1.48501 * 109.99701 * 299.99987 * 3 2 1 35 35 H 1.48493 * 110.00188 * 61.31910 * 3 2 1 36 36 H 1.07998 * 126.81738 * 359.97438 * 5 4 2 37 37 H 0.96992 * 119.99910 * 0.02562 * 9 7 6 38 38 H 1.09002 * 113.61233 * 334.56951 * 12 10 9 39 39 H 1.08999 * 113.69277 * 203.67152 * 12 10 9 40 40 H 1.08006 * 119.99803 * 359.97438 * 16 15 13 41 41 H 1.08004 * 120.00209 * 179.97438 * 17 16 15 42 42 H 1.07998 * 120.00278 * 180.27466 * 18 17 16 43 43 H 1.07999 * 119.99739 * 180.27464 * 24 19 18 44 44 H 1.08999 * 113.61674 * 89.11420 * 25 13 12 45 45 H 1.09000 * 113.61302 * 220.02355 * 25 13 12 46 46 H 1.08999 * 109.70375 * 284.02472 * 27 26 6 47 47 H 1.08998 * 109.70443 * 44.64230 * 27 26 6 48 48 H 1.09001 * 109.54440 * 168.32989 * 28 27 26 49 49 H 1.09000 * 109.54396 * 288.49927 * 28 27 26 50 50 H 1.08997 * 109.45967 * 50.44142 * 29 28 27 51 51 H 1.09003 * 109.46763 * 170.41181 * 29 28 27 52 52 H 1.09004 * 109.56640 * 170.83154 * 30 29 28 53 53 H 1.08997 * 109.56652 * 291.06366 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2304 5 6 3.0831 -0.4425 1.8712 6 6 3.1553 -1.3773 3.0002 7 6 4.2331 -1.4788 3.9985 8 8 4.1600 -2.3020 4.8908 9 7 5.3006 -0.6595 3.9233 10 6 6.3731 -0.7609 4.9161 11 1 6.4219 -1.7422 5.3878 12 6 7.7329 -0.2532 4.4081 13 6 7.3173 1.1359 4.9204 14 1 6.7787 1.7303 4.1824 15 6 8.4389 1.8968 5.5791 16 6 9.0679 1.3739 6.6933 17 6 10.0972 2.0718 7.2972 18 6 10.5008 3.2900 6.7839 19 6 9.8678 3.8157 5.6728 20 6 10.3039 5.1466 5.1165 21 9 9.5674 6.1697 5.7233 22 9 10.0834 5.1695 3.7352 23 9 11.6658 5.3363 5.3746 24 6 8.8387 3.1180 5.0691 25 6 6.3993 0.4073 5.9161 26 6 2.0192 -2.1288 2.9409 27 6 1.6151 -3.2334 3.8877 28 6 0.1225 -3.5204 3.6820 29 6 -0.1558 -3.6708 2.1835 30 6 -0.0049 -2.3109 1.4959 31 7 1.2886 -1.7251 1.8773 32 1 -0.3933 0.4417 0.7651 33 1 1.7923 -0.5138 -0.8899 34 1 1.5614 2.4679 -1.2085 35 1 1.5879 2.4586 1.2242 36 1 3.8116 0.3094 1.6061 37 1 5.3588 -0.0028 3.2119 38 1 7.8410 -0.3046 3.3246 39 1 8.5850 -0.6775 4.9391 40 1 8.7553 0.4201 7.0920 41 1 10.5885 1.6633 8.1681 42 1 11.3078 3.8330 7.2530 43 1 8.3473 3.5267 4.1985 44 1 6.8858 0.1629 6.8603 45 1 5.4307 0.8890 6.0500 46 1 2.1950 -4.1312 3.6738 47 1 1.7905 -2.9183 4.9163 48 1 -0.1458 -4.4429 4.1970 49 1 -0.4661 -2.6950 4.0823 50 1 0.5534 -4.3768 1.7515 51 1 -1.1707 -4.0408 2.0378 52 1 -0.0412 -2.4426 0.4145 53 1 -0.8132 -1.6510 1.8107 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_16915396.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:25 Heat of formation + Delta-G solvation = -120.050908 kcal Electronic energy + Delta-G solvation = -40327.169314 eV Core-core repulsion = 34716.465828 eV Total energy + Delta-G solvation = -5610.703485 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 421.165 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -51.19960 -48.72113 -48.67687 -42.78342 -41.46363 -40.16430 -38.73697 -38.05239 -36.87576 -34.52684 -33.49811 -32.78817 -32.02183 -31.15220 -29.44254 -27.11685 -26.79741 -26.56770 -26.09521 -24.63810 -24.03190 -23.39036 -22.42762 -21.70878 -21.20066 -20.35366 -19.58924 -19.53284 -19.38556 -18.98919 -18.83939 -17.42705 -17.25668 -17.03796 -16.87638 -16.57002 -16.32617 -16.02626 -15.86466 -15.65143 -15.55206 -15.44349 -15.32776 -15.27022 -15.13985 -15.12989 -14.95447 -14.83705 -14.78522 -14.68879 -14.60674 -14.48351 -14.24087 -14.08962 -13.88651 -13.70581 -13.35528 -13.19879 -13.14506 -12.86735 -12.70754 -12.40702 -12.35398 -12.17501 -12.01863 -11.85975 -11.80417 -11.75995 -11.67183 -11.17805 -10.89715 -10.87037 -10.17719 -10.01464 -9.75237 -9.54514 -9.03527 -4.90844 -0.04976 0.27061 0.73435 1.06658 1.45360 1.64434 1.68039 1.78597 2.04015 2.42050 2.46753 2.56360 2.71037 2.99235 3.21965 3.38372 3.47613 3.52759 3.56951 3.68118 3.70851 3.77522 3.80327 3.81482 3.89226 4.01860 4.11517 4.16108 4.18495 4.29212 4.29734 4.34998 4.39499 4.43674 4.52844 4.63083 4.69857 4.72385 4.76346 4.77963 4.81680 4.84144 4.91942 4.94298 4.98135 5.00583 5.04450 5.10702 5.16122 5.19446 5.20489 5.27462 5.35800 5.52672 5.72877 5.76406 5.82044 6.03872 6.21961 6.35619 6.72304 7.40735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.055 4.055 3 Si 0.800 3.200 4 C -0.018 4.018 5 C -0.160 4.160 6 C -0.255 4.255 7 C 0.592 3.408 8 O -0.589 6.589 9 N -0.697 5.697 10 C 0.117 3.883 11 H 0.086 0.914 12 C -0.124 4.124 13 C -0.067 4.067 14 H 0.114 0.886 15 C -0.072 4.072 16 C -0.086 4.086 17 C -0.118 4.118 18 C -0.087 4.087 19 C -0.195 4.195 20 C 0.506 3.494 21 F -0.185 7.185 22 F -0.180 7.180 23 F -0.182 7.182 24 C -0.076 4.076 25 C -0.142 4.142 26 C 0.102 3.898 27 C -0.053 4.053 28 C -0.124 4.124 29 C -0.134 4.134 30 C 0.105 3.895 31 N -0.429 5.429 32 H 0.384 0.616 33 H 0.130 0.870 34 H -0.298 1.298 35 H -0.291 1.291 36 H 0.184 0.816 37 H 0.414 0.586 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.101 0.899 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.067 0.933 50 H 0.068 0.932 51 H 0.107 0.893 52 H 0.098 0.902 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.714 -1.911 -1.694 2.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.163 4.163 3 Si 0.703 3.297 4 C -0.127 4.127 5 C -0.183 4.183 6 C -0.265 4.265 7 C 0.383 3.617 8 O -0.471 6.471 9 N -0.348 5.348 10 C 0.011 3.989 11 H 0.104 0.896 12 C -0.161 4.161 13 C -0.085 4.085 14 H 0.132 0.868 15 C -0.072 4.072 16 C -0.104 4.104 17 C -0.136 4.136 18 C -0.105 4.105 19 C -0.196 4.196 20 C 0.452 3.548 21 F -0.166 7.166 22 F -0.162 7.162 23 F -0.164 7.164 24 C -0.094 4.094 25 C -0.181 4.181 26 C -0.016 4.016 27 C -0.091 4.091 28 C -0.161 4.161 29 C -0.172 4.172 30 C -0.015 4.015 31 N -0.105 5.105 32 H 0.234 0.766 33 H 0.148 0.852 34 H -0.225 1.225 35 H -0.218 1.218 36 H 0.201 0.799 37 H 0.251 0.749 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.158 0.842 43 H 0.161 0.839 44 H 0.119 0.881 45 H 0.083 0.917 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.086 0.914 50 H 0.087 0.913 51 H 0.125 0.875 52 H 0.116 0.884 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.207 -2.047 -1.793 2.977 hybrid contribution -0.919 0.576 0.206 1.104 sum -2.126 -1.470 -1.587 3.033 Atomic orbital electron populations 1.86569 1.18294 1.80080 1.50314 1.25027 0.83351 1.11655 0.96297 0.93549 0.89905 0.70000 0.76237 1.20979 0.96405 0.95576 0.99737 1.22010 0.98440 1.02432 0.95429 1.19975 0.98082 1.05976 1.02478 1.17523 0.81461 0.79645 0.83111 1.90741 1.79756 1.38861 1.37698 1.45303 1.19795 1.38316 1.31404 1.21812 0.87376 0.99339 0.90356 0.89628 1.23390 0.95985 0.93835 1.02928 1.21627 0.93713 0.94930 0.98205 0.86793 1.19824 0.97457 0.93969 0.95930 1.21579 0.94225 1.00430 0.94164 1.21449 0.97333 0.93986 1.00843 1.21172 0.98799 0.96660 0.93897 1.20004 1.03326 0.94534 1.01732 1.18510 0.74653 0.86001 0.75595 1.93219 1.77236 1.62902 1.83253 1.93184 1.94422 1.96920 1.31626 1.93182 1.33367 1.96028 1.93810 1.21015 0.94559 0.94439 0.99357 1.23578 0.99959 0.96335 0.98209 1.20571 0.91836 0.98267 0.90971 1.20429 0.96814 0.94652 0.97225 1.21691 0.94571 1.03419 0.96467 1.21925 1.04562 0.95463 0.95252 1.22242 0.82216 0.95440 1.01627 1.44030 1.17971 1.27285 1.21231 0.76641 0.85211 1.22536 1.21789 0.79882 0.74882 0.89242 0.87773 0.83135 0.82743 0.84249 0.83864 0.88109 0.91658 0.90184 0.90064 0.89309 0.91396 0.91280 0.87508 0.88418 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.15 10.68 -148.98 -1.59 -0.44 16 2 C -0.05 0.21 2.99 71.23 0.21 0.43 16 3 Si 0.80 -4.06 31.10 68.60 2.13 -1.93 16 4 C -0.02 0.02 6.15 40.98 0.25 0.27 16 5 C -0.16 0.26 9.08 23.64 0.21 0.47 16 6 C -0.26 -1.13 6.28 -19.12 -0.12 -1.25 16 7 C 0.59 3.80 7.81 86.61 0.68 4.47 16 8 O -0.59 -8.12 14.93 -4.12 -0.06 -8.19 16 9 N -0.70 0.77 5.26 -443.45 -2.33 -1.56 16 10 C 0.12 -0.25 4.32 45.52 0.20 -0.05 16 11 H 0.09 0.21 7.46 -2.39 -0.02 0.19 16 12 C -0.12 0.85 7.29 31.12 0.23 1.08 16 13 C -0.07 0.43 3.86 -11.02 -0.04 0.39 16 14 H 0.11 -1.00 8.09 -2.39 -0.02 -1.02 16 15 C -0.07 0.27 5.29 -19.87 -0.11 0.17 16 16 C -0.09 0.40 8.61 22.27 0.19 0.60 16 17 C -0.12 0.46 10.05 22.27 0.22 0.68 16 18 C -0.09 0.07 9.40 22.27 0.21 0.28 16 19 C -0.19 -0.23 5.45 -19.87 -0.11 -0.34 16 20 C 0.51 1.89 3.37 71.24 0.24 2.13 16 21 F -0.18 -1.08 17.30 44.97 0.78 -0.30 16 22 F -0.18 -0.77 16.46 44.97 0.74 -0.03 16 23 F -0.18 -0.92 16.46 44.97 0.74 -0.18 16 24 C -0.08 0.10 9.06 22.27 0.20 0.31 16 25 C -0.14 0.55 7.25 31.12 0.23 0.78 16 26 C 0.10 0.47 6.57 41.69 0.27 0.74 16 27 C -0.05 -0.19 5.32 30.07 0.16 -0.03 16 28 C -0.12 0.24 5.98 30.77 0.18 0.42 16 29 C -0.13 0.56 5.92 30.69 0.18 0.74 16 30 C 0.10 -0.32 5.32 86.32 0.46 0.14 16 31 N -0.43 -0.43 3.11 -493.61 -1.54 -1.96 16 32 H 0.38 -2.40 8.64 -74.05 -0.64 -3.04 16 33 H 0.13 -0.72 7.96 -2.39 -0.02 -0.74 16 34 H -0.30 -0.67 7.11 99.48 0.71 0.03 16 35 H -0.29 -0.24 7.11 99.48 0.71 0.47 16 36 H 0.18 -1.74 6.51 -2.91 -0.02 -1.76 16 37 H 0.41 -2.87 7.83 -92.71 -0.73 -3.59 16 38 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 39 H 0.10 -0.80 7.72 -2.39 -0.02 -0.81 16 40 H 0.15 -1.27 6.66 -2.91 -0.02 -1.29 16 41 H 0.15 -1.26 8.06 -2.91 -0.02 -1.29 16 42 H 0.14 -0.35 7.60 -2.91 -0.02 -0.37 16 43 H 0.14 -0.55 7.60 -2.91 -0.02 -0.57 16 44 H 0.10 -0.52 6.31 -2.39 -0.02 -0.54 16 45 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.08 0.57 7.40 -2.39 -0.02 0.56 16 48 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 49 H 0.07 -0.12 8.12 -2.39 -0.02 -0.14 16 50 H 0.07 -0.17 8.11 -2.39 -0.02 -0.19 16 51 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 52 H 0.10 -0.30 7.69 -2.39 -0.02 -0.32 16 53 H 0.09 -0.46 7.94 -2.39 -0.02 -0.48 16 Total: 0.00 -21.25 435.32 2.49 -18.77 By element: Atomic # 1 Polarization: -16.26 SS G_CDS: -0.34 Total: -16.59 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 3.95 Total: 12.40 kcal Atomic # 7 Polarization: 0.35 SS G_CDS: -3.87 Total: -3.52 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -1.65 Total: -8.63 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 2.26 Total: -0.50 kcal Atomic # 14 Polarization: -4.06 SS G_CDS: 2.13 Total: -1.93 kcal Total: -21.25 2.49 -18.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_16915396.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.284 kcal (2) G-P(sol) polarization free energy of solvation -21.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds