Wall clock time and date at job start Tue Mar 9 2021 13:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.47104 * 2 1 4 4 C 1.50700 * 109.46969 * 119.99921 * 2 1 3 5 5 C 1.38271 * 119.94528 * 64.99767 * 4 2 1 6 6 C 1.38143 * 120.05365 * 179.97438 * 5 4 2 7 7 C 1.38731 * 119.94567 * 0.02562 * 6 5 4 8 8 O 1.35900 * 120.05627 * 180.02562 * 7 6 5 9 9 C 1.42899 * 117.00598 * 179.97438 * 8 7 6 10 10 C 1.52988 * 109.47643 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47354 * 180.02562 * 10 9 8 12 12 O 1.21282 * 120.00184 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00428 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00318 * 179.97438 * 13 11 10 15 15 H 1.09002 * 112.85031 * 336.19417 * 14 13 11 16 16 C 1.53777 * 113.69198 * 107.46229 * 14 13 11 17 17 C 1.53777 * 87.08036 * 89.12725 * 16 14 13 18 18 H 1.08997 * 113.69373 * 270.86929 * 17 16 14 19 19 C 1.50706 * 113.61362 * 139.98367 * 17 16 14 20 20 C 1.38216 * 119.99818 * 322.50210 * 19 17 16 21 21 C 1.38255 * 119.99744 * 179.97438 * 20 19 17 22 22 C 1.38212 * 120.00300 * 359.97134 * 21 20 19 23 23 C 1.38260 * 119.99650 * 0.28729 * 22 21 20 24 24 C 1.50698 * 119.99559 * 179.71963 * 23 22 21 25 25 F 1.39896 * 109.47613 * 359.97438 * 24 23 22 26 26 F 1.39905 * 109.46928 * 119.99383 * 24 23 22 27 27 F 1.39894 * 109.47091 * 239.99398 * 24 23 22 28 28 C 1.38208 * 120.00078 * 359.52112 * 23 22 21 29 29 C 1.53774 * 87.08084 * 25.43401 * 17 16 14 30 30 C 1.38728 * 119.88899 * 0.27459 * 7 6 5 31 31 C 1.38147 * 119.94320 * 359.46703 * 30 7 6 32 32 H 0.96708 * 113.99806 * 299.99814 * 1 2 3 33 33 H 1.09001 * 109.46968 * 239.99928 * 2 1 3 34 34 H 1.48500 * 109.99855 * 178.68079 * 3 2 1 35 35 H 1.48503 * 109.99988 * 299.99928 * 3 2 1 36 36 H 1.07993 * 119.97158 * 359.97438 * 5 4 2 37 37 H 1.07997 * 120.02519 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.46516 * 59.99705 * 9 8 7 39 39 H 1.09002 * 109.47102 * 300.00727 * 9 8 7 40 40 H 1.09002 * 109.47429 * 60.00235 * 10 9 8 41 41 H 1.09009 * 109.47157 * 300.00240 * 10 9 8 42 42 H 0.96996 * 120.00047 * 359.97438 * 13 11 10 43 43 H 1.08999 * 113.61591 * 334.57723 * 16 14 13 44 44 H 1.09005 * 113.61705 * 203.67841 * 16 14 13 45 45 H 1.08005 * 120.00025 * 359.97438 * 20 19 17 46 46 H 1.07999 * 119.99759 * 179.97438 * 21 20 19 47 47 H 1.08002 * 119.99812 * 180.02562 * 22 21 20 48 48 H 1.07999 * 119.99916 * 180.23498 * 28 23 22 49 49 H 1.08999 * 113.61250 * 89.11862 * 29 17 16 50 50 H 1.09002 * 113.61097 * 219.93227 * 29 17 16 51 51 H 1.07997 * 120.02695 * 179.72820 * 30 7 6 52 52 H 1.08000 * 119.97227 * 180.23231 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6839 -2.0605 1.3973 6 6 2.1438 -2.7141 2.5241 7 6 2.8539 -2.0145 3.4891 8 8 3.3078 -2.6554 4.5982 9 6 4.0318 -1.8723 5.5494 10 6 4.4590 -2.7591 6.7205 11 6 5.2220 -1.9332 7.7238 12 8 5.4056 -0.7514 7.5222 13 7 5.7004 -2.5077 8.8452 14 6 6.4427 -1.7048 9.8203 15 1 6.8956 -0.8165 9.3801 16 6 5.6580 -1.4205 11.1119 17 6 6.2453 -2.7302 11.6637 18 1 5.6389 -3.6089 11.4442 19 6 6.6511 -2.6465 13.1127 20 6 7.2201 -1.4872 13.6052 21 6 7.5919 -1.4103 14.9346 22 6 7.3940 -2.4924 15.7713 23 6 6.8296 -3.6539 15.2774 24 6 6.6196 -4.8360 16.1882 25 9 7.0707 -4.5198 17.4742 26 9 5.2575 -5.1517 16.2359 27 9 7.3360 -5.9339 15.7001 28 6 6.4543 -3.7295 13.9494 29 6 7.4132 -2.5273 10.6843 30 6 3.0954 -0.6587 3.3223 31 6 2.6380 -0.0108 2.1911 32 1 -0.3933 0.4417 0.7651 33 1 1.7923 -0.5139 -0.8900 34 1 3.5346 1.7702 0.0321 35 1 1.5615 2.4678 -1.2085 36 1 1.1308 -2.6045 0.6461 37 1 1.9499 -3.7685 2.6542 38 1 3.3957 -1.0668 5.9162 39 1 4.9161 -1.4487 5.0733 40 1 5.0953 -3.5644 6.3534 41 1 3.5748 -3.1831 7.1967 42 1 5.5533 -3.4527 9.0068 43 1 4.5763 -1.4482 10.9807 44 1 5.9983 -0.5315 11.6429 45 1 7.3744 -0.6414 12.9514 46 1 8.0369 -0.5045 15.3192 47 1 7.6840 -2.4320 16.8099 48 1 6.0100 -4.6355 13.5645 49 1 8.2334 -1.9409 11.0983 50 1 7.7495 -3.4487 10.2089 51 1 3.6441 -0.1110 4.0742 52 1 2.8290 1.0439 2.0591 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_4549602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:38 Heat of formation + Delta-G solvation = -172.295698 kcal Electronic energy + Delta-G solvation = -38014.079225 eV Core-core repulsion = 32303.391573 eV Total energy + Delta-G solvation = -5710.687652 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 422.154 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -51.23597 -48.76462 -48.70640 -41.70440 -41.27990 -40.50638 -39.26454 -38.83980 -37.16485 -34.73484 -33.38598 -32.81194 -32.17382 -31.88630 -31.31691 -27.17249 -26.95638 -26.63657 -26.21214 -25.32284 -23.60011 -23.45590 -22.53118 -22.20866 -21.53898 -20.37114 -19.56208 -19.54987 -19.42058 -19.01105 -18.33227 -17.79661 -17.47397 -17.32253 -17.15875 -16.90153 -16.51200 -16.35554 -16.18751 -15.87362 -15.82522 -15.63290 -15.61946 -15.47260 -15.15121 -15.02535 -14.96312 -14.87184 -14.73136 -14.69229 -14.54615 -14.38473 -14.30155 -14.17098 -14.02603 -13.77272 -13.56944 -13.42427 -13.23205 -12.94197 -12.85111 -12.77120 -12.39476 -12.20938 -12.04058 -11.87664 -11.77885 -11.74588 -11.71132 -11.25676 -11.05437 -10.41362 -10.21934 -10.09432 -10.04493 -9.79619 -9.21759 -5.01318 -0.08904 0.22839 0.28138 0.30306 1.32102 1.51754 1.60960 1.62364 1.70137 1.95080 2.42862 2.48272 2.65756 2.67574 2.95468 3.35003 3.45317 3.54862 3.57629 3.64707 3.69209 3.73088 3.83730 3.84018 3.89350 3.91295 3.95979 4.03395 4.07851 4.10725 4.24441 4.26331 4.34527 4.39337 4.44467 4.50141 4.63934 4.64947 4.68566 4.69955 4.78318 4.78822 4.87216 4.90510 4.96785 4.97563 5.04095 5.14567 5.17747 5.18243 5.28464 5.32132 5.44192 5.49478 5.62781 5.71851 5.78147 6.32375 6.46891 6.78466 7.16681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.066 4.066 3 Si 0.768 3.232 4 C -0.162 4.162 5 C -0.061 4.061 6 C -0.159 4.159 7 C 0.123 3.877 8 O -0.322 6.322 9 C 0.072 3.928 10 C -0.133 4.133 11 C 0.523 3.477 12 O -0.581 6.581 13 N -0.699 5.699 14 C 0.115 3.885 15 H 0.089 0.911 16 C -0.141 4.141 17 C -0.068 4.068 18 H 0.113 0.887 19 C -0.073 4.073 20 C -0.086 4.086 21 C -0.118 4.118 22 C -0.089 4.089 23 C -0.194 4.194 24 C 0.506 3.494 25 F -0.182 7.182 26 F -0.183 7.183 27 F -0.183 7.183 28 C -0.076 4.076 29 C -0.125 4.125 30 C -0.209 4.209 31 C -0.078 4.078 32 H 0.395 0.605 33 H 0.106 0.894 34 H -0.289 1.289 35 H -0.298 1.298 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.418 0.582 43 H 0.069 0.931 44 H 0.101 0.899 45 H 0.152 0.848 46 H 0.156 0.844 47 H 0.142 0.858 48 H 0.140 0.860 49 H 0.103 0.897 50 H 0.087 0.913 51 H 0.142 0.858 52 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.020 0.659 2.515 2.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.176 4.176 3 Si 0.675 3.325 4 C -0.163 4.163 5 C -0.079 4.079 6 C -0.178 4.178 7 C 0.078 3.922 8 O -0.236 6.236 9 C -0.004 4.004 10 C -0.173 4.173 11 C 0.311 3.689 12 O -0.461 6.461 13 N -0.351 5.351 14 C 0.009 3.991 15 H 0.107 0.893 16 C -0.180 4.180 17 C -0.087 4.087 18 H 0.131 0.869 19 C -0.073 4.073 20 C -0.104 4.104 21 C -0.136 4.136 22 C -0.107 4.107 23 C -0.195 4.195 24 C 0.452 3.548 25 F -0.163 7.163 26 F -0.165 7.165 27 F -0.164 7.164 28 C -0.094 4.094 29 C -0.163 4.163 30 C -0.228 4.228 31 C -0.095 4.095 32 H 0.245 0.755 33 H 0.124 0.876 34 H -0.216 1.216 35 H -0.226 1.226 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.256 0.744 43 H 0.088 0.912 44 H 0.119 0.881 45 H 0.170 0.830 46 H 0.173 0.827 47 H 0.160 0.840 48 H 0.158 0.842 49 H 0.122 0.878 50 H 0.106 0.894 51 H 0.159 0.841 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.696 1.522 1.510 2.734 hybrid contribution 0.104 -1.204 0.327 1.252 sum 1.800 0.317 1.838 2.592 Atomic orbital electron populations 1.86463 1.17296 1.82159 1.50477 1.25045 0.85195 1.10351 0.97041 0.93823 0.77856 0.75920 0.84934 1.20325 1.02739 0.95268 0.97974 1.20977 0.96678 0.93776 0.96427 1.20664 1.01849 1.01350 0.93913 1.19172 0.94541 0.91367 0.87108 1.85957 1.69220 1.38888 1.29496 1.22470 0.95817 0.93705 0.88363 1.21439 1.03050 0.99165 0.93640 1.20603 0.78482 0.87514 0.82329 1.90742 1.59601 1.18006 1.77713 1.45545 1.55681 1.13926 1.19967 1.21846 0.93505 0.95440 0.88320 0.89330 1.23569 1.00694 0.97871 0.95817 1.21642 0.98321 0.99773 0.88916 0.86939 1.19817 0.98527 0.93153 0.95793 1.21583 0.95037 0.97949 0.95791 1.21469 0.99565 0.98942 0.93580 1.21246 0.96145 0.91786 1.01507 1.19997 1.09641 0.94470 0.95414 1.18516 0.73721 0.83385 0.79170 1.93160 1.89097 1.92719 1.41338 1.93212 1.32913 1.93852 1.96484 1.93209 1.78341 1.57147 1.87704 1.20953 0.97402 0.99851 0.91192 1.23394 0.96439 1.01309 0.95187 1.21432 1.06423 0.93875 1.01041 1.20992 0.95992 0.99881 0.92683 0.75546 0.87621 1.21606 1.22612 0.84382 0.84104 0.91346 0.91703 0.85597 0.85481 0.74411 0.91190 0.88051 0.82996 0.82683 0.84024 0.84248 0.87818 0.89417 0.84055 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.53 12.83 -148.98 -1.91 -2.44 16 2 C -0.07 -0.03 2.80 71.24 0.20 0.17 16 3 Si 0.77 -0.74 29.80 68.60 2.04 1.31 16 4 C -0.16 -0.22 5.35 -19.85 -0.11 -0.32 16 5 C -0.06 -0.13 9.68 22.25 0.22 0.09 16 6 C -0.16 -0.42 9.99 22.37 0.22 -0.19 16 7 C 0.12 0.42 6.69 22.51 0.15 0.57 16 8 O -0.32 -0.71 10.14 -92.43 -0.94 -1.64 16 9 C 0.07 -0.06 4.03 71.98 0.29 0.23 16 10 C -0.13 0.84 6.07 29.84 0.18 1.02 16 11 C 0.52 -1.05 7.83 87.65 0.69 -0.37 16 12 O -0.58 -4.07 15.58 -3.04 -0.05 -4.12 16 13 N -0.70 5.08 5.27 -440.05 -2.32 2.76 16 14 C 0.11 -0.70 4.32 45.51 0.20 -0.50 16 15 H 0.09 -0.15 7.46 -2.39 -0.02 -0.16 16 16 C -0.14 1.00 7.25 31.12 0.23 1.23 16 17 C -0.07 0.59 3.86 -11.01 -0.04 0.55 16 18 H 0.11 -1.21 8.09 -2.39 -0.02 -1.23 16 19 C -0.07 0.38 5.29 -19.86 -0.11 0.27 16 20 C -0.09 0.53 8.61 22.27 0.19 0.72 16 21 C -0.12 0.59 10.05 22.27 0.22 0.81 16 22 C -0.09 0.15 9.43 22.27 0.21 0.36 16 23 C -0.19 -0.08 5.37 -19.87 -0.11 -0.19 16 24 C 0.51 1.61 3.32 71.24 0.24 1.84 16 25 F -0.18 -0.78 15.97 44.97 0.72 -0.06 16 26 F -0.18 -0.88 17.23 44.97 0.78 -0.10 16 27 F -0.18 -0.84 17.24 44.97 0.78 -0.07 16 28 C -0.08 0.17 9.26 22.27 0.21 0.38 16 29 C -0.13 1.17 7.29 31.12 0.23 1.39 16 30 C -0.21 -0.40 9.04 22.37 0.20 -0.20 16 31 C -0.08 -0.04 8.66 22.25 0.19 0.16 16 32 H 0.39 -2.74 8.70 -74.05 -0.64 -3.38 16 33 H 0.11 0.15 7.96 -2.39 -0.02 0.13 16 34 H -0.29 -1.20 7.11 99.48 0.71 -0.50 16 35 H -0.30 -1.89 7.11 99.48 0.71 -1.18 16 36 H 0.14 0.04 8.06 -2.91 -0.02 0.02 16 37 H 0.14 0.03 8.06 -2.91 -0.02 0.00 16 38 H 0.07 0.01 7.61 -2.39 -0.02 -0.01 16 39 H 0.06 0.04 7.63 -2.39 -0.02 0.02 16 40 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 41 H 0.13 -1.26 8.14 -2.38 -0.02 -1.28 16 42 H 0.42 -5.47 8.70 -92.71 -0.81 -6.27 16 43 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H 0.10 -0.81 6.31 -2.38 -0.02 -0.82 16 45 H 0.15 -1.55 6.66 -2.91 -0.02 -1.57 16 46 H 0.16 -1.44 8.06 -2.91 -0.02 -1.47 16 47 H 0.14 -0.45 7.16 -2.91 -0.02 -0.47 16 48 H 0.14 -0.63 8.05 -2.91 -0.02 -0.66 16 49 H 0.10 -1.00 7.72 -2.39 -0.02 -1.01 16 50 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 51 H 0.14 -0.02 6.30 -2.91 -0.02 -0.04 16 52 H 0.15 -0.55 4.90 -2.91 -0.01 -0.57 16 Total: 0.00 -21.73 442.47 2.39 -19.34 By element: Atomic # 1 Polarization: -22.59 SS G_CDS: -0.41 Total: -23.00 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 3.70 Total: 8.03 kcal Atomic # 7 Polarization: 5.08 SS G_CDS: -2.32 Total: 2.76 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -2.90 Total: -8.20 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 2.27 Total: -0.23 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: 2.04 Total: 1.31 kcal Total: -21.73 2.39 -19.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_4549602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.959 kcal (2) G-P(sol) polarization free energy of solvation -21.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds