Wall clock time and date at job start Tue Mar 9 2021 13:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86297 * 109.47176 * 2 1 4 4 C 1.50697 * 109.47041 * 239.99893 * 2 1 3 5 5 C 1.38245 * 119.94695 * 300.00251 * 4 2 1 6 6 C 1.38167 * 120.06071 * 179.97438 * 5 4 2 7 7 N 1.48002 * 120.03065 * 179.97438 * 6 5 4 8 8 O 1.21798 * 119.99920 * 0.03299 * 7 6 5 9 9 O 1.21796 * 119.99696 * 180.02562 * 7 6 5 10 10 C 1.38719 * 119.93738 * 0.02562 * 6 5 4 11 11 O 1.35900 * 120.04824 * 180.02562 * 10 6 5 12 12 C 1.42901 * 116.99753 * 179.97438 * 11 10 6 13 13 C 1.50700 * 109.47465 * 180.02562 * 12 11 10 14 14 O 1.21276 * 119.99590 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00055 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99872 * 179.97438 * 15 13 12 17 17 H 1.09000 * 112.84545 * 23.80306 * 16 15 13 18 18 C 1.53781 * 113.61274 * 154.99728 * 16 15 13 19 19 C 1.53776 * 87.08080 * 89.11788 * 18 16 15 20 20 H 1.09004 * 113.61212 * 270.88382 * 19 18 16 21 21 C 1.50702 * 113.61586 * 140.06312 * 19 18 16 22 22 C 1.38211 * 119.99833 * 299.72706 * 21 19 18 23 23 C 1.38260 * 119.99910 * 179.76505 * 22 21 19 24 24 C 1.38216 * 119.99639 * 0.48448 * 23 22 21 25 25 C 1.38257 * 120.00207 * 359.79028 * 24 23 22 26 26 C 1.50694 * 120.00081 * 179.97438 * 25 24 23 27 27 F 1.39897 * 109.47671 * 269.97905 * 26 25 24 28 28 F 1.39909 * 109.47071 * 29.98208 * 26 25 24 29 29 F 1.39901 * 109.46999 * 149.97804 * 26 25 24 30 30 C 1.38214 * 119.99970 * 359.96013 * 25 24 23 31 31 C 1.53774 * 113.61417 * 252.49505 * 16 15 13 32 32 C 1.38750 * 119.89157 * 359.97438 * 10 6 5 33 33 C 1.38125 * 119.94353 * 0.25901 * 32 10 6 34 34 H 0.96697 * 113.99542 * 59.99890 * 1 2 3 35 35 H 1.08996 * 109.46824 * 120.00441 * 2 1 3 36 36 H 1.48497 * 110.00054 * 60.00284 * 3 2 1 37 37 H 1.48502 * 109.99924 * 181.31905 * 3 2 1 38 38 H 1.08006 * 119.97024 * 0.02562 * 5 4 2 39 39 H 1.09006 * 109.47006 * 300.00233 * 12 11 10 40 40 H 1.09002 * 109.47291 * 59.99876 * 12 11 10 41 41 H 0.96995 * 120.00346 * 359.97438 * 15 13 12 42 42 H 1.09007 * 113.60895 * 203.66588 * 18 16 15 43 43 H 1.08995 * 113.61580 * 334.56577 * 18 16 15 44 44 H 1.07996 * 120.00259 * 359.97438 * 22 21 19 45 45 H 1.07994 * 120.00383 * 180.24846 * 23 22 21 46 46 H 1.08005 * 119.99776 * 179.76614 * 24 23 22 47 47 H 1.07993 * 120.00154 * 180.02562 * 30 25 24 48 48 H 1.09001 * 113.61211 * 25.43521 * 31 16 15 49 49 H 1.09003 * 113.61659 * 156.33375 * 31 16 15 50 50 H 1.08002 * 120.02434 * 179.97438 * 32 10 6 51 51 H 1.08004 * 119.96955 * 179.74781 * 33 32 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.5967 -2.0340 -1.4481 6 6 2.0555 -2.6874 -2.5757 7 7 1.6972 -4.1046 -2.8078 8 8 0.9971 -4.6951 -2.0049 9 8 2.1024 -4.6802 -3.8018 10 6 2.8531 -2.0143 -3.4895 11 8 3.3052 -2.6548 -4.5996 12 6 4.1213 -1.8994 -5.4972 13 6 4.5248 -2.7677 -6.6609 14 8 4.1507 -3.9200 -6.7160 15 7 5.3021 -2.2640 -7.6399 16 6 5.6948 -3.1083 -8.7709 17 1 5.0073 -3.9373 -8.9390 18 6 6.0265 -2.3149 -10.0459 19 6 7.4731 -2.2418 -9.5295 20 1 7.6672 -1.3767 -8.8953 21 6 8.5093 -2.4201 -10.6092 22 6 8.5470 -3.5898 -11.3444 23 6 9.4945 -3.7515 -12.3382 24 6 10.4103 -2.7473 -12.5897 25 6 10.3761 -1.5794 -11.8505 26 6 11.3750 -0.4849 -12.1244 27 9 12.5092 -0.6787 -11.3288 28 9 11.7414 -0.5150 -13.4743 29 9 10.8015 0.7555 -11.8245 30 6 9.4257 -1.4158 -10.8605 31 6 7.1738 -3.5282 -8.7419 32 6 3.1876 -0.6860 -3.2688 33 6 2.7304 -0.0387 -2.1375 34 1 -0.3932 0.4417 -0.7650 35 1 1.7923 -0.5139 0.8899 36 1 1.5616 2.4678 1.2085 37 1 3.5347 1.7702 -0.0321 38 1 0.9753 -2.5574 -0.7365 39 1 3.5595 -1.0399 -5.8631 40 1 5.0133 -1.5545 -4.9743 41 1 5.6016 -1.3425 -7.5956 42 1 5.9187 -2.8958 -10.9620 43 1 5.5318 -1.3451 -10.0977 44 1 7.8342 -4.3763 -11.1448 45 1 9.5214 -4.6638 -12.9154 46 1 11.1528 -2.8751 -13.3636 47 1 9.3987 -0.5034 -10.2833 48 1 7.6053 -3.5378 -7.7410 49 1 7.3798 -4.4407 -9.3014 50 1 3.8088 -0.1600 -3.9786 51 1 2.9939 0.9941 -1.9632 There are 82 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 82 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_4549638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:15 Heat of formation + Delta-G solvation = -159.329165 kcal Electronic energy + Delta-G solvation = -43393.721086 eV Core-core repulsion = 37008.116889 eV Total energy + Delta-G solvation = -6385.604197 eV No. of doubly occupied orbitals = 82 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 453.132 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -51.22172 -48.74305 -48.69977 -43.28877 -41.87474 -41.46191 -40.50376 -39.55751 -38.74206 -37.58974 -37.35332 -34.78967 -33.47797 -32.85832 -32.30765 -32.09675 -29.80163 -27.81911 -27.14319 -26.67804 -26.62478 -26.06645 -24.14538 -23.42945 -22.92580 -22.55889 -21.90775 -20.55647 -20.38761 -19.77020 -19.55557 -19.41597 -19.16858 -18.96380 -18.63359 -18.45922 -18.11139 -17.57587 -17.34390 -17.22795 -16.86567 -16.42181 -16.29796 -16.15711 -15.98092 -15.67112 -15.64669 -15.56882 -15.45721 -15.19526 -15.15740 -14.98002 -14.85917 -14.76428 -14.69981 -14.49392 -14.23110 -14.02192 -13.91843 -13.76231 -13.71736 -13.40982 -13.23002 -13.20745 -12.92033 -12.70171 -12.39364 -12.35635 -12.27150 -12.24984 -12.18981 -11.94458 -11.86312 -11.74474 -11.25078 -11.02345 -10.83104 -10.56249 -10.21996 -10.12282 -9.78918 -9.77849 -4.99394 -1.30916 -0.23646 -0.08188 0.16236 0.23750 0.36012 1.20923 1.27661 1.45763 1.62050 1.64225 2.02773 2.05991 2.32140 2.43523 2.68623 2.96654 3.12529 3.25260 3.35935 3.39966 3.46094 3.51295 3.61114 3.66024 3.71857 3.72262 3.80430 3.85617 3.94131 3.95474 4.04742 4.08265 4.11452 4.25564 4.29639 4.36167 4.40040 4.51452 4.63930 4.65178 4.67671 4.79586 4.84732 4.86214 4.91187 4.97644 5.04957 5.07966 5.14494 5.18156 5.19846 5.32559 5.43471 5.62046 5.77177 5.78696 6.42235 6.46316 6.73666 7.17453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.083 4.083 3 Si 0.800 3.200 4 C -0.150 4.150 5 C -0.004 4.004 6 C -0.105 4.105 7 N 0.035 4.965 8 O -0.206 6.206 9 O -0.171 6.171 10 C 0.195 3.805 11 O -0.292 6.292 12 C 0.023 3.977 13 C 0.510 3.490 14 O -0.565 6.565 15 N -0.691 5.691 16 C 0.115 3.885 17 H 0.082 0.918 18 C -0.122 4.122 19 C -0.065 4.065 20 H 0.120 0.880 21 C -0.073 4.073 22 C -0.087 4.087 23 C -0.119 4.119 24 C -0.087 4.087 25 C -0.195 4.195 26 C 0.506 3.494 27 F -0.185 7.185 28 F -0.183 7.183 29 F -0.180 7.180 30 C -0.074 4.074 31 C -0.144 4.144 32 C -0.187 4.187 33 C -0.005 4.005 34 H 0.398 0.602 35 H 0.109 0.891 36 H -0.307 1.307 37 H -0.263 1.263 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.423 0.577 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.149 0.851 45 H 0.153 0.847 46 H 0.139 0.861 47 H 0.146 0.854 48 H 0.070 0.930 49 H 0.097 0.903 50 H 0.208 0.792 51 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 12.351 -2.981 12.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.191 4.191 3 Si 0.703 3.297 4 C -0.152 4.152 5 C -0.023 4.023 6 C -0.190 4.190 7 N 0.545 4.455 8 O -0.413 6.413 9 O -0.386 6.386 10 C 0.145 3.855 11 O -0.202 6.202 12 C -0.053 4.053 13 C 0.296 3.704 14 O -0.442 6.442 15 N -0.345 5.345 16 C 0.009 3.991 17 H 0.100 0.900 18 C -0.160 4.160 19 C -0.083 4.083 20 H 0.138 0.862 21 C -0.073 4.073 22 C -0.105 4.105 23 C -0.137 4.137 24 C -0.105 4.105 25 C -0.196 4.196 26 C 0.452 3.548 27 F -0.166 7.166 28 F -0.164 7.164 29 F -0.161 7.161 30 C -0.092 4.092 31 C -0.183 4.183 32 C -0.206 4.206 33 C -0.023 4.023 34 H 0.248 0.752 35 H 0.126 0.874 36 H -0.235 1.235 37 H -0.189 1.189 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.161 0.839 41 H 0.262 0.738 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.167 0.833 45 H 0.171 0.829 46 H 0.157 0.843 47 H 0.164 0.836 48 H 0.089 0.911 49 H 0.115 0.885 50 H 0.225 0.775 51 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.846 12.246 -2.024 12.734 hybrid contribution 0.321 -1.134 0.185 1.193 sum 3.167 11.112 -1.840 11.700 Atomic orbital electron populations 1.86532 1.17258 1.82217 1.50635 1.25481 0.85481 1.12084 0.96038 0.93805 0.77932 0.72491 0.85432 1.20452 1.02083 0.92680 0.99941 1.20829 0.94232 0.94789 0.92494 1.20870 1.13498 0.81497 1.03176 1.43900 0.98205 1.04006 0.99437 1.94507 1.36191 1.68380 1.42184 1.94673 1.56234 1.69377 1.18315 1.18960 0.89579 0.92062 0.84932 1.86471 1.63668 1.39793 1.30254 1.23144 0.98217 0.94580 0.89385 1.20500 0.78280 0.87633 0.83952 1.90855 1.55153 1.20244 1.77915 1.45287 1.51276 1.16467 1.21483 1.21839 0.96114 0.94610 0.86514 0.89965 1.23386 0.94080 1.01977 0.96574 1.21653 0.92325 0.99678 0.94624 0.86181 1.19829 0.96369 0.93482 0.97640 1.21580 0.97797 0.97376 0.93750 1.21444 0.94554 0.99441 0.98270 1.21172 0.99214 0.91984 0.98172 1.20007 0.99836 0.95857 1.03885 1.18510 0.80492 0.81924 0.73831 1.93219 1.54071 1.95097 1.74210 1.93187 1.92530 1.96550 1.34176 1.93183 1.84411 1.45550 1.92978 1.21015 0.92783 1.00066 0.95332 1.23585 0.95346 0.98193 1.01142 1.21822 1.06046 0.90445 1.02271 1.21732 0.89452 1.01187 0.89889 0.75187 0.87359 1.23498 1.18935 0.83367 0.83488 0.83902 0.73833 0.88084 0.88715 0.83289 0.82933 0.84341 0.83649 0.91140 0.88477 0.77531 0.79439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.20 12.77 -148.98 -1.90 0.29 16 2 C -0.08 0.55 2.82 71.23 0.20 0.75 16 3 Si 0.80 -8.62 29.78 68.60 2.04 -6.57 16 4 C -0.15 0.96 5.39 -19.85 -0.11 0.85 16 5 C 0.00 -0.01 9.11 22.25 0.20 0.20 16 6 C -0.11 -0.65 6.87 36.48 0.25 -0.40 16 7 N 0.03 0.56 4.45 -46.24 -0.21 0.35 16 8 O -0.21 -3.78 18.45 18.89 0.35 -3.43 16 9 O -0.17 -3.57 17.24 25.61 0.44 -3.13 16 10 C 0.19 -0.15 6.67 22.51 0.15 0.00 16 11 O -0.29 -0.83 7.68 -63.40 -0.49 -1.32 16 12 C 0.02 -0.22 5.22 71.24 0.37 0.15 16 13 C 0.51 -0.74 7.91 87.66 0.69 -0.04 16 14 O -0.56 -7.18 16.10 16.02 0.26 -6.92 16 15 N -0.69 6.41 5.26 -440.05 -2.32 4.09 16 16 C 0.11 -0.73 4.32 45.51 0.20 -0.54 16 17 H 0.08 -0.01 7.46 -2.39 -0.02 -0.03 16 18 C -0.12 1.31 7.29 31.12 0.23 1.53 16 19 C -0.06 0.67 3.85 -11.01 -0.04 0.63 16 20 H 0.12 -1.67 8.09 -2.38 -0.02 -1.69 16 21 C -0.07 0.46 5.29 -19.87 -0.11 0.35 16 22 C -0.09 0.54 8.63 22.27 0.19 0.73 16 23 C -0.12 0.58 10.05 22.27 0.22 0.81 16 24 C -0.09 0.17 9.40 22.27 0.21 0.38 16 25 C -0.19 0.10 5.45 -19.87 -0.11 -0.01 16 26 C 0.51 1.10 3.36 71.23 0.24 1.34 16 27 F -0.18 -0.80 17.30 44.97 0.78 -0.02 16 28 F -0.18 -0.70 16.46 44.97 0.74 0.04 16 29 F -0.18 -0.44 16.46 44.97 0.74 0.30 16 30 C -0.07 0.28 9.06 22.27 0.20 0.48 16 31 C -0.14 1.04 7.25 31.12 0.23 1.27 16 32 C -0.19 2.29 9.04 22.37 0.20 2.50 16 33 C -0.01 0.07 8.66 22.25 0.19 0.26 16 34 H 0.40 -5.04 8.70 -74.06 -0.64 -5.69 16 35 H 0.11 -0.49 7.96 -2.39 -0.02 -0.51 16 36 H -0.31 0.24 7.11 99.48 0.71 0.95 16 37 H -0.26 2.33 7.11 99.48 0.71 3.04 16 38 H 0.15 0.54 7.61 -2.91 -0.02 0.52 16 39 H 0.15 -2.74 7.66 -2.38 -0.02 -2.76 16 40 H 0.14 -2.57 7.66 -2.39 -0.02 -2.59 16 41 H 0.42 -7.57 8.70 -92.71 -0.81 -8.37 16 42 H 0.10 -1.02 7.73 -2.38 -0.02 -1.04 16 43 H 0.09 -1.23 8.14 -2.39 -0.02 -1.25 16 44 H 0.15 -1.43 6.65 -2.91 -0.02 -1.45 16 45 H 0.15 -1.34 8.06 -2.91 -0.02 -1.36 16 46 H 0.14 -0.47 7.60 -2.91 -0.02 -0.50 16 47 H 0.15 -0.98 7.60 -2.91 -0.02 -1.00 16 48 H 0.07 -0.38 8.14 -2.39 -0.02 -0.40 16 49 H 0.10 -0.69 6.31 -2.39 -0.02 -0.70 16 50 H 0.21 -4.68 6.30 -2.91 -0.02 -4.70 16 51 H 0.19 -3.84 4.87 -2.91 -0.01 -3.85 16 Total: 0.00 -42.18 447.09 3.71 -38.47 By element: Atomic # 1 Polarization: -33.04 SS G_CDS: -0.34 Total: -33.38 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 3.62 Total: 11.23 kcal Atomic # 7 Polarization: 6.97 SS G_CDS: -2.52 Total: 4.45 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -1.34 Total: -14.51 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 2.26 Total: 0.32 kcal Atomic # 14 Polarization: -8.62 SS G_CDS: 2.04 Total: -6.57 kcal Total: -42.18 3.71 -38.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_4549638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.862 kcal (2) G-P(sol) polarization free energy of solvation -42.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds