Wall clock time and date at job start Tue Mar 9 2021 13:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50699 * 109.46603 * 119.99410 * 2 1 3 5 5 C 1.38250 * 119.97158 * 245.00345 * 4 2 1 6 6 C 1.38291 * 120.11407 * 180.02562 * 5 4 2 7 7 C 1.38120 * 120.05250 * 359.97438 * 6 5 4 8 8 C 1.38758 * 119.94562 * 359.97438 * 7 6 5 9 9 O 1.35903 * 120.05545 * 180.02562 * 8 7 6 10 10 C 1.42904 * 117.00089 * 0.02562 * 9 8 7 11 11 C 1.50693 * 109.46937 * 179.97438 * 10 9 8 12 12 O 1.21288 * 120.00378 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00017 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00443 * 179.97438 * 13 11 10 15 15 H 1.08996 * 112.85016 * 336.19523 * 14 13 11 16 16 C 1.53791 * 113.61573 * 107.50014 * 14 13 11 17 17 C 1.53777 * 87.07985 * 89.11850 * 16 14 13 18 18 H 1.09007 * 113.61543 * 270.88705 * 17 16 14 19 19 C 1.50698 * 113.69186 * 139.99549 * 17 16 14 20 20 C 1.38226 * 119.99627 * 322.18822 * 19 17 16 21 21 C 1.38251 * 119.99812 * 179.80845 * 20 19 17 22 22 C 1.38211 * 120.00025 * 0.40077 * 21 20 19 23 23 C 1.38260 * 120.00280 * 359.85517 * 22 21 20 24 24 C 1.50706 * 120.00498 * 179.97438 * 23 22 21 25 25 F 1.39893 * 109.46862 * 269.97823 * 24 23 22 26 26 F 1.39898 * 109.46562 * 29.97671 * 24 23 22 27 27 F 1.39897 * 109.47150 * 149.97438 * 24 23 22 28 28 C 1.38219 * 119.99655 * 359.95388 * 23 22 21 29 29 C 1.53781 * 87.08379 * 25.43472 * 17 16 14 30 30 C 1.38170 * 119.97424 * 64.72634 * 4 2 1 31 31 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 32 32 H 1.08996 * 109.47455 * 239.99290 * 2 1 3 33 33 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 34 34 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 35 35 H 1.08002 * 119.94214 * 359.97438 * 5 4 2 36 36 H 1.07994 * 119.97497 * 179.97438 * 6 5 4 37 37 H 1.08001 * 120.03010 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.46734 * 299.99866 * 10 9 8 39 39 H 1.08998 * 109.47210 * 59.99647 * 10 9 8 40 40 H 0.97001 * 119.99897 * 359.97438 * 13 11 10 41 41 H 1.08991 * 113.61308 * 203.66978 * 16 14 13 42 42 H 1.09003 * 113.60872 * 334.57259 * 16 14 13 43 43 H 1.08001 * 119.99420 * 0.02562 * 20 19 17 44 44 H 1.07994 * 120.00230 * 180.22873 * 21 20 19 45 45 H 1.08002 * 120.00083 * 179.83143 * 22 21 20 46 46 H 1.07995 * 119.99960 * 179.97438 * 28 23 22 47 47 H 1.09003 * 113.61590 * 220.02268 * 29 17 16 48 48 H 1.08995 * 113.61556 * 89.11292 * 29 17 16 49 49 H 1.07992 * 120.02711 * 0.02562 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.6386 -0.0114 2.1911 6 6 3.1013 -0.6604 3.3212 7 6 2.8571 -2.0090 3.4932 8 6 2.1466 -2.7124 2.5311 9 8 1.9046 -4.0393 2.6983 10 6 2.4108 -4.6461 3.8889 11 6 2.0479 -6.1086 3.9007 12 8 1.4174 -6.5845 2.9803 13 7 2.4230 -6.8878 4.9344 14 6 2.0698 -8.3094 4.9462 15 1 1.1981 -8.5341 4.3316 16 6 3.2644 -9.2432 4.6890 17 6 3.4980 -9.2340 6.2089 18 1 4.1513 -8.4289 6.5454 19 6 3.8881 -10.5773 6.7697 20 6 3.3097 -11.7291 6.2702 21 6 3.6705 -12.9617 6.7820 22 6 4.6034 -13.0416 7.7986 23 6 5.1781 -11.8892 8.3018 24 6 6.1949 -11.9763 9.4107 25 9 5.5434 -11.9110 10.6469 26 9 6.8890 -13.1870 9.3127 27 9 7.0962 -10.9119 9.3016 28 6 4.8203 -10.6572 7.7875 29 6 2.0009 -8.9155 6.3579 30 6 1.6795 -2.0582 1.4007 31 1 -0.3934 0.4417 0.7649 32 1 1.7924 -0.5139 -0.8899 33 1 3.5346 1.7703 0.0322 34 1 1.5616 2.4678 -1.2086 35 1 2.8308 1.0430 2.0582 36 1 3.6539 -0.1124 4.0699 37 1 3.2190 -2.5155 4.3757 38 1 3.4953 -4.5402 3.9178 39 1 1.9746 -4.1568 4.7598 40 1 2.9270 -6.5072 5.6707 41 1 2.9790 -10.2193 4.2969 42 1 4.0689 -8.7764 4.1207 43 1 2.5785 -11.6663 5.4779 44 1 3.2214 -13.8619 6.3893 45 1 4.8833 -14.0044 8.2002 46 1 5.2688 -9.7569 8.1808 47 1 1.7855 -8.1842 7.1369 48 1 1.3702 -9.8021 6.4221 49 1 1.1235 -2.6028 0.6520 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:31 Heat of formation + Delta-G solvation = -164.147879 kcal Electronic energy + Delta-G solvation = -36420.677063 eV Core-core repulsion = 30865.880346 eV Total energy + Delta-G solvation = -5554.796717 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.138 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -51.23534 -48.75960 -48.70996 -41.81049 -41.30657 -40.43639 -39.26133 -38.63615 -37.21917 -34.82476 -32.88422 -32.47918 -32.26004 -31.53319 -29.29664 -27.15416 -26.86029 -26.66117 -26.09612 -23.67487 -23.44835 -23.07615 -22.39630 -21.66344 -20.42818 -19.56848 -19.43062 -19.36408 -18.98062 -18.50838 -17.67300 -17.49050 -17.36779 -17.27970 -17.01413 -16.70841 -16.31650 -16.17387 -16.06068 -15.66134 -15.57654 -15.49112 -15.39258 -15.17084 -15.03263 -14.98745 -14.87151 -14.76425 -14.68767 -14.48401 -14.24603 -14.19041 -14.01611 -13.75870 -13.56246 -13.41086 -13.21782 -12.96158 -12.90336 -12.60642 -12.41004 -12.14379 -12.01923 -11.89353 -11.78380 -11.68140 -11.28436 -11.05073 -10.49330 -10.24335 -10.16268 -9.93593 -9.80470 -9.28545 -4.99017 -0.09629 0.20692 0.22206 0.39042 1.27635 1.39299 1.46884 1.60807 1.65975 1.97681 2.42001 2.56724 2.67315 2.67411 2.95305 3.34780 3.42518 3.47890 3.53830 3.63222 3.67941 3.68393 3.83410 3.84882 3.92701 4.00023 4.06209 4.08299 4.09188 4.13151 4.23528 4.25046 4.34469 4.38366 4.49388 4.61418 4.64126 4.64940 4.76372 4.83037 4.89263 4.94637 4.97879 5.01613 5.11392 5.16381 5.24435 5.30826 5.37117 5.40666 5.45094 5.58725 5.70027 5.77218 6.26436 6.44538 6.75028 7.09773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.086 4.086 3 Si 0.795 3.205 4 C -0.085 4.085 5 C -0.156 4.156 6 C -0.070 4.070 7 C -0.202 4.202 8 C 0.113 3.887 9 O -0.324 6.324 10 C 0.037 3.963 11 C 0.515 3.485 12 O -0.573 6.573 13 N -0.692 5.692 14 C 0.113 3.887 15 H 0.084 0.916 16 C -0.143 4.143 17 C -0.066 4.066 18 H 0.117 0.883 19 C -0.073 4.073 20 C -0.087 4.087 21 C -0.118 4.118 22 C -0.087 4.087 23 C -0.194 4.194 24 C 0.506 3.494 25 F -0.183 7.183 26 F -0.183 7.183 27 F -0.181 7.181 28 C -0.075 4.075 29 C -0.122 4.122 30 C -0.151 4.151 31 H 0.396 0.604 32 H 0.099 0.901 33 H -0.281 1.281 34 H -0.301 1.301 35 H 0.151 0.849 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.422 0.578 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.151 0.849 44 H 0.154 0.846 45 H 0.140 0.860 46 H 0.144 0.856 47 H 0.092 0.908 48 H 0.104 0.896 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.021 3.420 6.654 7.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.195 4.195 3 Si 0.700 3.300 4 C -0.086 4.086 5 C -0.173 4.173 6 C -0.088 4.088 7 C -0.220 4.220 8 C 0.068 3.932 9 O -0.237 6.237 10 C -0.040 4.040 11 C 0.302 3.698 12 O -0.451 6.451 13 N -0.346 5.346 14 C 0.008 3.992 15 H 0.103 0.897 16 C -0.181 4.181 17 C -0.084 4.084 18 H 0.135 0.865 19 C -0.073 4.073 20 C -0.104 4.104 21 C -0.136 4.136 22 C -0.105 4.105 23 C -0.196 4.196 24 C 0.452 3.548 25 F -0.165 7.165 26 F -0.164 7.164 27 F -0.162 7.162 28 C -0.093 4.093 29 C -0.160 4.160 30 C -0.170 4.170 31 H 0.246 0.754 32 H 0.117 0.883 33 H -0.208 1.208 34 H -0.230 1.230 35 H 0.168 0.832 36 H 0.182 0.818 37 H 0.179 0.821 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.260 0.740 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.168 0.832 44 H 0.172 0.828 45 H 0.158 0.842 46 H 0.162 0.838 47 H 0.111 0.889 48 H 0.122 0.878 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.055 3.209 4.954 5.996 hybrid contribution 0.608 -1.009 0.165 1.189 sum 1.663 2.200 5.119 5.815 Atomic orbital electron populations 1.86482 1.17365 1.82313 1.50454 1.25427 0.85313 1.11862 0.96882 0.93567 0.77713 0.74098 0.84604 1.20209 0.98265 0.93081 0.97034 1.21219 1.00685 1.00574 0.94828 1.21353 0.96725 0.93544 0.97165 1.21642 1.03493 0.96385 1.00499 1.19194 0.96278 0.82311 0.95389 1.86124 1.74662 1.20878 1.42076 1.22736 1.02568 0.90069 0.88655 1.20551 0.78665 0.88536 0.82086 1.90773 1.40949 1.75996 1.37352 1.45337 1.57301 1.08905 1.23012 1.21876 0.98389 0.79746 0.99187 0.89734 1.23585 0.98250 1.00657 0.95645 1.21643 0.97566 0.93849 0.95356 0.86511 1.19810 0.95938 0.95971 0.95605 1.21580 0.98364 0.91660 0.98831 1.21448 0.96909 0.99373 0.95880 1.21180 0.95527 0.97542 0.96229 1.20009 1.02085 0.97447 1.00012 1.18507 0.80736 0.73328 0.82189 1.93219 1.81139 1.95999 1.46118 1.93184 1.80996 1.46036 1.96212 1.93182 1.69900 1.57052 1.96111 1.21007 0.96371 0.96322 0.95619 1.23396 0.95273 1.01946 0.95417 1.20297 1.04249 0.94665 0.97771 0.75438 0.88319 1.20794 1.22988 0.83163 0.81834 0.82085 0.85722 0.85471 0.74003 0.88160 0.91232 0.83172 0.82788 0.84244 0.83849 0.88935 0.87775 0.87209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.72 12.83 -148.98 -1.91 -3.63 16 2 C -0.09 -0.15 2.80 71.24 0.20 0.05 16 3 Si 0.80 -1.75 29.80 68.60 2.04 0.29 16 4 C -0.09 -0.17 5.35 -19.88 -0.11 -0.28 16 5 C -0.16 0.44 8.67 22.29 0.19 0.64 16 6 C -0.07 0.36 10.04 22.25 0.22 0.58 16 7 C -0.20 0.70 9.04 22.37 0.20 0.90 16 8 C 0.11 0.44 6.69 22.51 0.15 0.59 16 9 O -0.32 -2.08 9.67 -73.43 -0.71 -2.79 16 10 C 0.04 -0.15 5.22 71.23 0.37 0.22 16 11 C 0.52 0.78 7.91 87.65 0.69 1.47 16 12 O -0.57 -7.91 16.10 15.98 0.26 -7.65 16 13 N -0.69 4.45 5.26 -440.03 -2.32 2.13 16 14 C 0.11 -0.56 4.32 45.52 0.20 -0.36 16 15 H 0.08 0.05 7.46 -2.39 -0.02 0.03 16 16 C -0.14 0.88 7.26 31.12 0.23 1.10 16 17 C -0.07 0.58 3.85 -11.02 -0.04 0.54 16 18 H 0.12 -1.37 8.09 -2.38 -0.02 -1.39 16 19 C -0.07 0.39 5.29 -19.87 -0.11 0.28 16 20 C -0.09 0.50 8.60 22.27 0.19 0.69 16 21 C -0.12 0.55 10.05 22.27 0.22 0.77 16 22 C -0.09 0.14 9.40 22.27 0.21 0.34 16 23 C -0.19 -0.05 5.45 -19.86 -0.11 -0.16 16 24 C 0.51 1.47 3.36 71.24 0.24 1.71 16 25 F -0.18 -0.86 17.30 44.97 0.78 -0.08 16 26 F -0.18 -0.82 16.46 44.97 0.74 -0.08 16 27 F -0.18 -0.66 16.46 44.97 0.74 0.08 16 28 C -0.08 0.20 9.06 22.27 0.20 0.40 16 29 C -0.12 1.14 7.29 31.12 0.23 1.37 16 30 C -0.15 -0.98 9.62 22.37 0.22 -0.76 16 31 H 0.40 -2.27 8.70 -74.06 -0.64 -2.91 16 32 H 0.10 0.40 7.96 -2.39 -0.02 0.38 16 33 H -0.28 -0.49 7.11 99.48 0.71 0.22 16 34 H -0.30 -1.69 7.11 99.48 0.71 -0.98 16 35 H 0.15 -1.18 4.90 -2.91 -0.01 -1.19 16 36 H 0.16 -1.88 8.06 -2.91 -0.02 -1.91 16 37 H 0.16 -1.71 6.30 -2.91 -0.02 -1.73 16 38 H 0.13 -1.29 7.66 -2.39 -0.02 -1.31 16 39 H 0.13 -1.36 7.66 -2.39 -0.02 -1.38 16 40 H 0.42 -5.95 8.70 -92.71 -0.81 -6.76 16 41 H 0.10 -0.67 6.33 -2.39 -0.02 -0.69 16 42 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.15 -1.42 6.68 -2.91 -0.02 -1.44 16 44 H 0.15 -1.35 8.06 -2.91 -0.02 -1.37 16 45 H 0.14 -0.44 7.60 -2.91 -0.02 -0.46 16 46 H 0.14 -0.75 7.60 -2.91 -0.02 -0.77 16 47 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 48 H 0.10 -0.98 7.71 -2.39 -0.02 -1.00 16 49 H 0.11 1.12 8.06 -2.91 -0.02 1.10 16 Total: 0.00 -29.39 421.21 2.86 -26.54 By element: Atomic # 1 Polarization: -24.53 SS G_CDS: -0.37 Total: -24.90 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 3.60 Total: 10.10 kcal Atomic # 7 Polarization: 4.45 SS G_CDS: -2.32 Total: 2.13 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -2.36 Total: -14.07 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 2.26 Total: -0.08 kcal Atomic # 14 Polarization: -1.75 SS G_CDS: 2.04 Total: 0.29 kcal Total: -29.39 2.86 -26.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.613 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds