Wall clock time and date at job start Tue Mar 9 2021 13:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 C 1.50698 * 109.47321 * 239.99522 * 2 1 3 5 5 C 1.35453 * 125.55909 * 120.02182 * 4 2 1 6 6 C 1.39837 * 107.86146 * 180.02562 * 5 4 2 7 7 C 1.37867 * 107.08859 * 0.02562 * 6 5 4 8 8 C 1.46679 * 126.23598 * 180.02562 * 7 6 5 9 9 O 1.21695 * 119.99851 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99926 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99876 * 179.97438 * 10 8 7 12 12 H 1.08993 * 112.84912 * 334.67142 * 11 10 8 13 13 C 1.53787 * 113.61249 * 105.86151 * 11 10 8 14 14 C 1.54050 * 86.98305 * 89.16214 * 13 11 10 15 15 H 1.08997 * 113.61606 * 270.88520 * 14 13 11 16 16 C 1.50701 * 113.69420 * 139.99073 * 14 13 11 17 17 C 1.38213 * 119.99984 * 322.46242 * 16 14 13 18 18 C 1.38252 * 120.00045 * 180.02562 * 17 16 14 19 19 C 1.38218 * 120.00008 * 359.95580 * 18 17 16 20 20 C 1.38249 * 120.00080 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.00298 * 180.02562 * 20 19 18 22 22 F 1.39899 * 109.46823 * 0.02562 * 21 20 19 23 23 F 1.39896 * 109.47096 * 119.99555 * 21 20 19 24 24 F 1.39896 * 109.47421 * 239.99854 * 21 20 19 25 25 C 1.38211 * 119.99998 * 359.80527 * 20 19 18 26 26 C 1.53777 * 87.08106 * 25.43135 * 14 13 11 27 27 N 1.35531 * 125.56709 * 299.72127 * 4 2 1 28 28 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 29 29 H 1.09001 * 109.47103 * 119.99412 * 2 1 3 30 30 H 1.48496 * 110.00262 * 59.99721 * 3 2 1 31 31 H 1.48497 * 109.99780 * 181.31712 * 3 2 1 32 32 H 1.08003 * 126.07341 * 359.97438 * 5 4 2 33 33 H 1.08000 * 126.45548 * 180.02562 * 6 5 4 34 34 H 0.97001 * 120.00137 * 0.02562 * 10 8 7 35 35 H 1.08999 * 113.61319 * 203.66140 * 13 11 10 36 36 H 1.08995 * 113.61262 * 334.56846 * 13 11 10 37 37 H 1.07994 * 119.99825 * 359.97438 * 17 16 14 38 38 H 1.07997 * 120.00240 * 179.97438 * 18 17 16 39 39 H 1.08004 * 119.99824 * 180.02562 * 19 18 17 40 40 H 1.08005 * 120.00392 * 180.23326 * 25 20 19 41 41 H 1.08996 * 113.61663 * 220.02341 * 26 14 13 42 42 H 1.08997 * 113.61742 * 89.11771 * 26 14 13 43 43 H 0.97005 * 125.67503 * 359.96698 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7138 -0.1637 -2.1915 6 6 2.9569 -1.1458 -3.1568 7 6 2.3010 -2.2873 -2.7475 8 6 2.2771 -3.5735 -3.4522 9 8 2.8767 -3.7026 -4.5033 10 7 1.5911 -4.6123 -2.9357 11 6 1.5668 -5.8967 -3.6398 12 1 1.7341 -5.7948 -4.7120 13 6 2.4397 -6.9775 -2.9802 14 6 1.2013 -7.3519 -2.1440 15 1 1.1194 -6.7941 -1.2112 16 6 1.0242 -8.8366 -1.9555 17 6 1.3255 -9.7050 -2.9876 18 6 1.1625 -11.0670 -2.8149 19 6 0.6991 -11.5602 -1.6098 20 6 0.3980 -10.6916 -0.5773 21 6 -0.1068 -11.2293 0.7369 22 9 -0.1859 -12.6245 0.6704 23 9 0.7729 -10.8609 1.7604 24 9 -1.3756 -10.7019 1.0002 25 6 0.5642 -9.3303 -0.7487 26 6 0.3516 -6.7703 -3.2861 27 7 1.6789 -2.0024 -1.5530 28 1 -0.3933 0.4417 -0.7650 29 1 1.7924 -0.5137 0.8900 30 1 1.5614 2.4679 1.2084 31 1 3.5345 1.7703 -0.0321 32 1 3.0836 0.8509 -2.2095 33 1 3.5473 -1.0317 -4.0539 34 1 1.1129 -4.5093 -2.0981 35 1 2.7563 -7.7623 -3.6671 36 1 3.2617 -6.5740 -2.3891 37 1 1.6876 -9.3196 -3.9292 38 1 1.3976 -11.7456 -3.6215 39 1 0.5721 -12.6242 -1.4747 40 1 0.3326 -8.6519 0.0591 41 1 -0.5109 -6.1997 -2.9418 42 1 0.0984 -7.4985 -4.0565 43 1 1.1460 -2.6222 -1.0307 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9705318_6580494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:04 Heat of formation + Delta-G solvation = -117.662137 kcal Electronic energy + Delta-G solvation = -31796.044384 eV Core-core repulsion = 26780.283481 eV Total energy + Delta-G solvation = -5015.760903 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.118 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.13734 -48.65846 -48.59578 -42.59893 -41.66737 -40.29214 -38.91196 -37.81385 -34.88516 -33.02215 -32.51761 -32.01001 -31.28759 -27.39166 -27.21419 -26.88102 -26.12712 -23.66671 -23.58822 -22.55574 -21.66406 -21.19556 -20.51262 -19.95148 -19.46055 -19.34409 -19.10263 -18.21671 -17.50920 -17.28065 -16.79088 -16.56487 -16.35516 -16.24885 -15.87531 -15.52060 -15.48340 -15.24804 -15.21445 -15.04005 -15.03249 -14.88140 -14.75188 -14.68223 -14.55676 -14.43503 -14.31245 -14.03306 -13.87867 -13.74947 -13.63924 -13.37585 -13.08455 -12.53919 -12.29224 -12.12711 -12.09217 -11.98850 -11.48456 -11.24693 -10.80257 -10.38096 -10.28375 -10.12244 -9.97622 -9.30877 -5.09357 -0.22748 0.05404 0.30513 1.07343 1.48800 1.60669 1.63964 1.79598 1.88081 2.09469 2.26202 2.31671 2.68789 2.97712 3.18279 3.23102 3.38624 3.43609 3.47456 3.48514 3.60265 3.68147 3.73714 3.82776 3.88013 4.02919 4.17264 4.20618 4.22386 4.33622 4.41666 4.44321 4.49936 4.62360 4.67739 4.72046 4.79545 4.87479 4.95905 5.00737 5.04144 5.12799 5.23905 5.38658 5.54847 5.58066 5.77870 6.13899 6.32042 6.33914 7.04203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.056 4.056 3 Si 0.722 3.278 4 C 0.023 3.977 5 C -0.200 4.200 6 C -0.096 4.096 7 C -0.053 4.053 8 C 0.594 3.406 9 O -0.521 6.521 10 N -0.716 5.716 11 C 0.122 3.878 12 H 0.110 0.890 13 C -0.143 4.143 14 C -0.075 4.075 15 H 0.099 0.901 16 C -0.072 4.072 17 C -0.084 4.084 18 C -0.115 4.115 19 C -0.076 4.076 20 C -0.179 4.179 21 C 0.508 3.492 22 F -0.176 7.176 23 F -0.176 7.176 24 F -0.176 7.176 25 C -0.066 4.066 26 C -0.135 4.135 27 N -0.524 5.524 28 H 0.384 0.616 29 H 0.115 0.885 30 H -0.253 1.253 31 H -0.253 1.253 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.395 0.605 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 2.090 -1.609 3.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.166 4.166 3 Si 0.622 3.378 4 C -0.095 4.095 5 C -0.225 4.225 6 C -0.122 4.122 7 C -0.166 4.166 8 C 0.382 3.618 9 O -0.396 6.396 10 N -0.367 5.367 11 C 0.016 3.984 12 H 0.128 0.872 13 C -0.182 4.182 14 C -0.094 4.094 15 H 0.117 0.883 16 C -0.072 4.072 17 C -0.102 4.102 18 C -0.133 4.133 19 C -0.094 4.094 20 C -0.181 4.181 21 C 0.453 3.547 22 F -0.158 7.158 23 F -0.158 7.158 24 F -0.157 7.157 25 C -0.085 4.085 26 C -0.173 4.173 27 N -0.120 5.120 28 H 0.232 0.768 29 H 0.132 0.868 30 H -0.178 1.178 31 H -0.177 1.177 32 H 0.169 0.831 33 H 0.171 0.829 34 H 0.229 0.771 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.097 0.903 42 H 0.120 0.880 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -0.678 2.117 -1.306 2.578 hybrid contribution -0.556 -1.215 1.233 1.818 sum -1.235 0.902 -0.073 1.531 Atomic orbital electron populations 1.86500 1.16988 1.81761 1.49669 1.24977 0.85233 1.11088 0.95307 0.93991 0.81072 0.75892 0.86884 1.21161 1.03679 0.85047 0.99608 1.20729 1.05091 1.00680 0.95957 1.21344 1.00136 0.90578 1.00160 1.20419 1.08423 0.96669 0.91130 1.17041 0.78640 0.81788 0.84351 1.90880 1.43743 1.82888 1.22054 1.45562 1.53479 1.11285 1.26388 1.21852 0.96567 0.81790 0.98154 0.87198 1.23636 0.96701 0.98648 0.99209 1.21679 0.97745 0.91164 0.98788 0.88311 1.19637 0.99048 0.95345 0.93161 1.21299 0.96877 0.93127 0.98916 1.21208 0.99205 0.95652 0.97223 1.21081 0.95902 1.00219 0.92204 1.19972 1.08572 0.95769 0.93748 1.18311 0.75571 0.75545 0.85231 1.93180 1.96134 1.29963 1.96481 1.93231 1.68923 1.91308 1.62305 1.93230 1.41379 1.86262 1.94874 1.20778 0.96618 0.93301 0.97754 1.23439 0.96829 0.98782 0.98212 1.41938 1.40523 1.10998 1.18554 0.76842 0.86751 1.17825 1.17684 0.83097 0.82891 0.77130 0.88336 0.90427 0.84772 0.84485 0.84311 0.85022 0.90270 0.87976 0.74651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.03 12.88 -35.23 -0.45 0.58 16 2 C -0.06 0.12 3.08 36.00 0.11 0.23 16 3 Si 0.72 -1.90 30.54 -169.99 -5.19 -7.09 16 4 C 0.02 -0.03 6.47 -81.95 -0.53 -0.56 16 5 C -0.20 0.12 9.32 -39.98 -0.37 -0.25 16 6 C -0.10 -0.10 10.65 -39.12 -0.42 -0.52 16 7 C -0.05 -0.04 7.06 -81.98 -0.58 -0.62 16 8 C 0.59 0.98 7.79 -12.85 -0.10 0.88 16 9 O -0.52 -2.84 16.50 5.19 0.09 -2.75 16 10 N -0.72 1.16 5.26 -54.32 -0.29 0.88 16 11 C 0.12 -0.23 4.30 -67.11 -0.29 -0.51 16 12 H 0.11 -0.03 7.50 -51.93 -0.39 -0.42 16 13 C -0.14 0.34 7.27 -25.77 -0.19 0.15 16 14 C -0.08 0.23 3.87 -90.82 -0.35 -0.12 16 15 H 0.10 -0.37 8.09 -51.93 -0.42 -0.79 16 16 C -0.07 0.12 5.29 -104.62 -0.55 -0.43 16 17 C -0.08 0.18 8.61 -39.59 -0.34 -0.16 16 18 C -0.11 0.21 10.05 -39.58 -0.40 -0.19 16 19 C -0.08 0.04 9.43 -39.58 -0.37 -0.33 16 20 C -0.18 -0.07 5.37 -104.63 -0.56 -0.64 16 21 C 0.51 0.77 3.32 36.01 0.12 0.89 16 22 F -0.18 -0.35 15.97 2.25 0.04 -0.31 16 23 F -0.18 -0.41 17.23 2.25 0.04 -0.38 16 24 F -0.18 -0.39 17.24 2.25 0.04 -0.35 16 25 C -0.07 0.04 9.26 -39.58 -0.37 -0.33 16 26 C -0.13 0.46 7.29 -25.92 -0.19 0.27 16 27 N -0.52 0.80 5.99 -5.70 -0.03 0.77 16 28 H 0.38 -2.05 8.70 45.56 0.40 -1.65 16 29 H 0.12 -0.23 7.96 -51.93 -0.41 -0.64 16 30 H -0.25 -0.15 7.11 56.52 0.40 0.26 16 31 H -0.25 0.02 7.11 56.52 0.40 0.42 16 32 H 0.15 -0.38 6.17 -52.48 -0.32 -0.71 16 33 H 0.15 0.13 8.06 -52.49 -0.42 -0.30 16 34 H 0.39 -1.61 7.83 -40.82 -0.32 -1.93 16 35 H 0.10 -0.29 6.33 -51.93 -0.33 -0.62 16 36 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 37 H 0.13 -0.53 6.67 -52.49 -0.35 -0.88 16 38 H 0.14 -0.52 8.06 -52.49 -0.42 -0.94 16 39 H 0.14 -0.22 7.16 -52.48 -0.38 -0.59 16 40 H 0.13 -0.22 8.05 -52.48 -0.42 -0.64 16 41 H 0.08 -0.29 8.14 -51.93 -0.42 -0.72 16 42 H 0.10 -0.38 7.72 -51.93 -0.40 -0.78 16 43 H 0.42 -1.58 8.19 -40.82 -0.33 -1.91 16 LS Contribution 377.03 15.07 5.68 5.68 Total: 0.00 -8.54 377.03 -10.03 -18.58 By element: Atomic # 1 Polarization: -8.80 SS G_CDS: -4.57 Total: -13.37 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -5.38 Total: -2.22 kcal Atomic # 7 Polarization: 1.96 SS G_CDS: -0.32 Total: 1.64 kcal Atomic # 8 Polarization: -1.81 SS G_CDS: -0.37 Total: -2.17 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.11 Total: -1.04 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: -5.19 Total: -7.09 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -8.54 -10.03 -18.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_6580494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.085 kcal (2) G-P(sol) polarization free energy of solvation -8.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds