Wall clock time and date at job start Tue Mar 9 2021 13:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35967 * 117.00191 * 2 1 4 4 C 1.39449 * 120.11949 * 179.97438 * 3 2 1 5 5 O 1.34776 * 133.24974 * 0.04990 * 4 3 2 6 6 C 1.34918 * 110.84825 * 179.97438 * 5 4 3 7 7 C 1.46995 * 125.14098 * 179.97438 * 6 5 4 8 8 O 1.21653 * 119.99908 * 180.02562 * 7 6 5 9 9 N 1.34769 * 120.00015 * 0.02562 * 7 6 5 10 10 C 1.46501 * 120.00014 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.85074 * 336.20143 * 10 9 7 12 12 C 1.53782 * 113.61142 * 107.50467 * 10 9 7 13 13 C 1.53962 * 87.11063 * 89.18830 * 12 10 9 14 14 H 1.08993 * 113.61598 * 270.84305 * 13 12 10 15 15 C 1.50700 * 113.66521 * 139.88647 * 13 12 10 16 16 C 1.38212 * 119.99778 * 142.55267 * 15 13 12 17 17 C 1.38257 * 120.00014 * 180.02562 * 16 15 13 18 18 C 1.50699 * 120.00085 * 179.97438 * 17 16 15 19 19 F 1.39905 * 109.47034 * 89.99616 * 18 17 16 20 20 F 1.39893 * 109.47494 * 210.00132 * 18 17 16 21 21 F 1.39909 * 109.47293 * 330.00048 * 18 17 16 22 22 C 1.38213 * 119.99925 * 359.95379 * 17 16 15 23 23 C 1.38251 * 120.00263 * 0.02641 * 22 17 16 24 24 C 1.38223 * 119.99724 * 359.76294 * 23 22 17 25 25 C 1.53781 * 113.61619 * 205.00312 * 10 9 7 26 26 C 1.35809 * 109.71941 * 0.22657 * 6 5 4 27 27 C 1.40620 * 119.13516 * 180.02562 * 4 3 2 28 28 C 1.39778 * 120.11644 * 359.97438 * 27 4 3 29 29 C 1.50702 * 120.09265 * 180.02562 * 28 27 4 30 30 O 1.42895 * 109.46700 * 284.97686 * 29 28 27 31 31 Si 1.86290 * 109.47241 * 164.97534 * 29 28 27 32 32 C 1.36631 * 119.81284 * 0.02562 * 28 27 4 33 33 C 1.38254 * 120.12105 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.47536 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.47615 * 300.00008 * 1 2 3 36 36 H 1.09003 * 109.47330 * 60.00042 * 1 2 3 37 37 H 0.97001 * 120.00013 * 0.02562 * 9 7 6 38 38 H 1.08997 * 113.61668 * 203.66381 * 12 10 9 39 39 H 1.08998 * 113.61674 * 334.48890 * 12 10 9 40 40 H 1.08004 * 120.00100 * 359.97438 * 16 15 13 41 41 H 1.08007 * 119.99710 * 179.97438 * 22 17 16 42 42 H 1.08004 * 120.00302 * 179.97438 * 23 22 17 43 43 H 1.07999 * 119.99754 * 180.25791 * 24 23 22 44 44 H 1.09002 * 113.61445 * 25.43587 * 25 10 9 45 45 H 1.09002 * 113.61408 * 156.25317 * 25 10 9 46 46 H 1.08000 * 126.96065 * 179.73337 * 26 6 5 47 47 H 1.09000 * 109.46778 * 44.97408 * 29 28 27 48 48 H 0.96698 * 114.00551 * 299.99508 * 30 29 28 49 49 H 1.48504 * 110.00038 * 179.97438 * 31 29 28 50 50 H 1.48504 * 110.00565 * 301.31916 * 31 29 28 51 51 H 1.07998 * 119.74930 * 179.97438 * 32 28 27 52 52 H 1.08006 * 119.66152 * 359.97438 * 33 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4387 1.2873 0.0005 5 8 4.4141 0.3573 0.0003 6 6 5.6317 0.9385 0.0005 7 6 6.9131 0.2183 0.0009 8 8 7.9596 0.8387 0.0015 9 7 6.9286 -1.1293 0.0004 10 6 8.2057 -1.8472 0.0002 11 1 9.0251 -1.2533 -0.4049 12 6 8.5350 -2.5189 1.3438 13 6 7.7812 -3.7556 0.8215 14 1 6.7148 -3.7442 1.0465 15 6 8.4421 -5.0621 1.1780 16 6 7.6698 -6.1597 1.5082 17 6 8.2761 -7.3582 1.8359 18 6 7.4341 -8.5549 2.1964 19 9 7.1441 -9.2866 1.0398 20 9 8.1350 -9.3642 3.0969 21 9 6.2411 -8.1247 2.7873 22 6 9.6546 -7.4590 1.8323 23 6 10.4272 -6.3612 1.5017 24 6 9.8209 -5.1642 1.1699 25 6 8.1170 -3.2620 -0.5958 26 6 5.4945 2.2897 0.0060 27 6 4.0555 2.5510 0.0011 28 6 3.2766 3.7116 0.0005 29 6 3.9382 5.0656 0.0005 30 8 4.4596 5.3409 1.3022 31 14 2.6869 6.3682 -0.4556 32 6 1.9137 3.6150 0.0000 33 6 1.2957 2.3726 0.0005 34 1 -0.3634 -1.0276 -0.0005 35 1 -0.3634 0.5138 0.8900 36 1 -0.3634 0.5138 -0.8900 37 1 6.0942 -1.6240 -0.0005 38 1 9.6004 -2.6909 1.4965 39 1 8.0563 -2.0422 2.1992 40 1 6.5926 -6.0809 1.5111 41 1 10.1282 -8.3952 2.0887 42 1 11.5043 -6.4399 1.4993 43 1 10.4243 -4.3078 0.9075 44 1 7.2999 -3.3860 -1.3064 45 1 9.0680 -3.6366 -0.9747 46 1 6.2874 3.0229 0.0116 47 1 4.7512 5.0727 -0.7255 48 1 3.7903 5.3504 2.0001 49 1 3.3268 7.7083 -0.4585 50 1 2.1138 6.0756 -1.7939 51 1 1.3129 4.5125 0.0000 52 1 0.2174 2.3120 0.0005 There are 81 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 81 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_6672420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:07 Heat of formation + Delta-G solvation = -155.572549 kcal Electronic energy + Delta-G solvation = -43131.115098 eV Core-core repulsion = 37001.555763 eV Total energy + Delta-G solvation = -6129.559335 eV No. of doubly occupied orbitals = 81 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 448.138 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -51.25131 -48.77542 -48.72594 -43.79436 -41.72176 -40.80295 -40.35873 -39.08736 -38.98549 -37.01009 -34.93670 -33.68660 -32.88720 -32.26934 -31.85388 -30.93605 -28.58482 -27.18000 -26.75598 -26.69472 -26.22135 -24.93936 -24.01556 -23.45306 -22.62193 -22.11777 -21.80425 -20.49186 -19.88934 -19.58527 -19.43502 -19.12699 -18.93301 -18.54407 -17.86088 -17.72387 -17.38823 -17.24972 -16.93588 -16.61646 -16.48931 -16.23435 -16.15540 -15.83637 -15.79217 -15.74732 -15.58991 -15.46902 -15.18811 -15.00684 -14.88924 -14.85616 -14.74716 -14.59271 -14.54204 -14.45435 -14.27869 -14.17658 -13.77367 -13.58659 -13.48726 -13.41563 -13.32930 -13.26497 -12.95972 -12.43970 -12.41538 -12.29826 -12.09665 -11.98099 -11.91738 -11.85017 -11.64160 -11.32291 -11.04827 -10.45171 -10.36821 -10.21199 -9.86003 -9.81717 -9.02289 -5.00429 -0.71164 -0.10425 0.08425 0.20993 0.57334 1.13236 1.29946 1.59234 1.67899 1.82040 1.83253 2.00088 2.12555 2.38347 2.41111 2.65737 2.93646 3.13548 3.32963 3.36749 3.40398 3.59014 3.61611 3.63084 3.67649 3.78749 3.81483 3.85440 3.88639 3.95856 4.05648 4.06372 4.15844 4.21763 4.32807 4.36640 4.40034 4.42760 4.44003 4.55717 4.61218 4.73197 4.76095 4.77448 4.80515 4.85088 4.86293 4.89613 4.98192 5.02953 5.03966 5.15030 5.19730 5.26843 5.30925 5.37653 5.52221 5.56930 5.76570 6.14764 6.26624 6.76279 6.78243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.334 6.334 3 C 0.136 3.864 4 C 0.020 3.980 5 O -0.181 6.181 6 C -0.034 4.034 7 C 0.606 3.394 8 O -0.543 6.543 9 N -0.687 5.687 10 C 0.110 3.890 11 H 0.101 0.899 12 C -0.139 4.139 13 C -0.071 4.071 14 H 0.105 0.895 15 C -0.073 4.073 16 C -0.078 4.078 17 C -0.194 4.194 18 C 0.506 3.494 19 F -0.183 7.183 20 F -0.182 7.182 21 F -0.182 7.182 22 C -0.085 4.085 23 C -0.116 4.116 24 C -0.084 4.084 25 C -0.123 4.123 26 C -0.115 4.115 27 C -0.099 4.099 28 C -0.108 4.108 29 C -0.080 4.080 30 O -0.555 6.555 31 Si 0.795 3.205 32 C -0.079 4.079 33 C -0.165 4.165 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.417 0.583 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.158 0.842 43 H 0.155 0.845 44 H 0.084 0.916 45 H 0.114 0.886 46 H 0.170 0.830 47 H 0.097 0.903 48 H 0.396 0.604 49 H -0.301 1.301 50 H -0.280 1.280 51 H 0.176 0.824 52 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.064 1.626 0.070 6.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.248 6.248 3 C 0.090 3.910 4 C -0.028 4.028 5 O -0.083 6.083 6 C -0.084 4.084 7 C 0.392 3.608 8 O -0.422 6.422 9 N -0.337 5.337 10 C 0.005 3.995 11 H 0.119 0.881 12 C -0.177 4.177 13 C -0.089 4.089 14 H 0.123 0.877 15 C -0.073 4.073 16 C -0.097 4.097 17 C -0.195 4.195 18 C 0.452 3.548 19 F -0.165 7.165 20 F -0.163 7.163 21 F -0.164 7.164 22 C -0.103 4.103 23 C -0.134 4.134 24 C -0.102 4.102 25 C -0.161 4.161 26 C -0.135 4.135 27 C -0.100 4.100 28 C -0.109 4.109 29 C -0.189 4.189 30 O -0.363 6.363 31 Si 0.699 3.301 32 C -0.096 4.096 33 C -0.183 4.183 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.254 0.746 38 H 0.130 0.870 39 H 0.086 0.914 40 H 0.156 0.844 41 H 0.159 0.841 42 H 0.176 0.824 43 H 0.173 0.827 44 H 0.103 0.897 45 H 0.133 0.867 46 H 0.187 0.813 47 H 0.115 0.885 48 H 0.246 0.754 49 H -0.229 1.229 50 H -0.207 1.207 51 H 0.193 0.807 52 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.974 2.127 -0.807 5.470 hybrid contribution -0.032 -1.046 -0.039 1.047 sum -5.007 1.081 -0.847 5.192 Atomic orbital electron populations 1.23491 0.75275 1.05997 1.03254 1.86144 1.24348 1.25831 1.88449 1.18003 0.86048 0.86951 1.00008 1.19227 0.88295 0.87042 1.08198 1.84003 1.12683 1.35052 1.76528 1.21926 0.84080 0.92682 1.09692 1.16621 0.84941 0.82740 0.76514 1.90894 1.31336 1.68219 1.51725 1.45537 1.10761 1.04734 1.72679 1.22060 0.85702 0.93265 0.98431 0.88062 1.23622 1.02403 0.94814 0.96860 1.21651 1.00169 0.90009 0.97065 0.87657 1.19755 0.93846 0.94552 0.99117 1.20981 1.01073 0.91105 0.96493 1.19992 0.95146 0.93512 1.10897 1.18517 0.78353 0.83583 0.74339 1.93220 1.93898 1.79580 1.49790 1.93183 1.78714 1.75624 1.68770 1.93185 1.49017 1.89657 1.84513 1.21198 0.91454 1.00865 0.96810 1.21479 1.01628 0.91881 0.98395 1.21591 0.94127 0.98649 0.95785 1.23419 1.04633 0.92242 0.95774 1.22851 0.95466 0.94475 1.00754 1.19603 0.92317 0.92963 1.05153 1.19688 0.93788 0.93928 1.03492 1.25354 1.05849 0.98593 0.89055 1.86502 1.39673 1.93343 1.16765 0.93843 0.80399 0.73165 0.82679 1.20798 0.92434 0.98631 0.97733 1.21434 1.01987 0.89534 1.05378 0.86768 0.90396 0.90685 0.74611 0.87020 0.91366 0.84435 0.84061 0.82422 0.82703 0.89712 0.86749 0.81294 0.88496 0.75433 1.22877 1.20661 0.80733 0.79930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.62 10.50 -93.17 -0.98 -1.60 16 3 C 0.14 0.32 6.70 22.57 0.15 0.47 16 4 C 0.02 0.14 7.35 23.14 0.17 0.31 16 5 O -0.18 -1.43 10.28 -13.30 -0.14 -1.57 16 6 C -0.03 -0.27 7.07 24.00 0.17 -0.10 16 7 C 0.61 4.55 7.80 86.54 0.67 5.23 16 8 O -0.54 -7.34 16.42 -4.20 -0.07 -7.41 16 9 N -0.69 -0.55 5.26 -443.71 -2.33 -2.88 16 10 C 0.11 -0.23 4.32 45.52 0.20 -0.04 16 11 H 0.10 0.05 7.46 -2.38 -0.02 0.03 16 12 C -0.14 0.55 7.26 31.18 0.23 0.78 16 13 C -0.07 0.37 3.87 -10.95 -0.04 0.33 16 14 H 0.11 -0.60 8.10 -2.39 -0.02 -0.62 16 15 C -0.07 0.22 5.29 -19.87 -0.11 0.12 16 16 C -0.08 0.00 9.06 22.27 0.20 0.21 16 17 C -0.19 -0.37 5.45 -19.87 -0.11 -0.48 16 18 C 0.51 2.31 3.36 71.24 0.24 2.55 16 19 F -0.18 -1.16 17.30 44.97 0.78 -0.38 16 20 F -0.18 -1.02 16.46 44.97 0.74 -0.28 16 21 F -0.18 -1.05 16.46 44.97 0.74 -0.31 16 22 C -0.09 0.06 9.40 22.27 0.21 0.27 16 23 C -0.12 0.48 10.05 22.27 0.22 0.70 16 24 C -0.08 0.41 8.60 22.27 0.19 0.60 16 25 C -0.12 0.76 7.28 31.12 0.23 0.99 16 26 C -0.11 -0.96 10.68 23.79 0.25 -0.70 16 27 C -0.10 -0.62 6.16 -20.24 -0.12 -0.75 16 28 C -0.11 -0.10 5.26 -19.87 -0.10 -0.20 16 29 C -0.08 -0.01 2.70 71.24 0.19 0.18 16 30 O -0.55 -0.63 12.88 -148.98 -1.92 -2.55 16 31 Si 0.79 -3.23 29.93 68.60 2.05 -1.18 16 32 C -0.08 0.37 8.62 22.02 0.19 0.56 16 33 C -0.16 0.72 9.03 22.40 0.20 0.92 16 34 H 0.11 -1.10 8.14 -2.39 -0.02 -1.12 16 35 H 0.08 -0.85 7.66 -2.39 -0.02 -0.87 16 36 H 0.07 -0.79 7.66 -2.39 -0.02 -0.81 16 37 H 0.42 -0.98 8.42 -92.71 -0.78 -1.76 16 38 H 0.11 -0.73 6.32 -2.39 -0.02 -0.74 16 39 H 0.07 -0.09 8.14 -2.39 -0.02 -0.10 16 40 H 0.14 -0.21 7.60 -2.91 -0.02 -0.23 16 41 H 0.14 -0.37 7.60 -2.91 -0.02 -0.39 16 42 H 0.16 -1.39 8.06 -2.91 -0.02 -1.41 16 43 H 0.16 -1.46 6.68 -2.91 -0.02 -1.48 16 44 H 0.08 -0.54 8.14 -2.39 -0.02 -0.55 16 45 H 0.11 -0.93 7.71 -2.39 -0.02 -0.95 16 46 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 47 H 0.10 0.28 7.96 -2.39 -0.02 0.26 16 48 H 0.40 -3.08 8.70 -74.06 -0.64 -3.73 16 49 H -0.30 -1.23 7.11 99.48 0.71 -0.52 16 50 H -0.28 -0.07 7.11 99.48 0.71 0.64 16 51 H 0.18 -2.14 5.08 -2.91 -0.01 -2.16 16 52 H 0.18 -2.15 6.26 -2.91 -0.02 -2.17 16 Total: 0.00 -25.43 448.60 2.88 -22.55 By element: Atomic # 1 Polarization: -17.01 SS G_CDS: -0.34 Total: -17.35 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 4.35 Total: 12.96 kcal Atomic # 7 Polarization: -0.55 SS G_CDS: -2.33 Total: -2.88 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -3.10 Total: -13.12 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 2.26 Total: -0.97 kcal Atomic # 14 Polarization: -3.23 SS G_CDS: 2.05 Total: -1.18 kcal Total: -25.43 2.88 -22.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_6672420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.025 kcal (2) G-P(sol) polarization free energy of solvation -25.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds