Wall clock time and date at job start Tue Mar 9 2021 13:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86299 * 109.47028 * 2 1 4 4 C 1.50692 * 109.47461 * 120.00480 * 2 1 3 5 5 C 1.34241 * 126.50082 * 255.02372 * 4 2 1 6 6 N 1.36837 * 109.93893 * 179.97438 * 5 4 2 7 7 C 1.46493 * 125.06374 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47579 * 265.03332 * 7 6 5 9 9 O 1.21286 * 119.99929 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00124 * 179.97438 * 8 7 6 11 11 C 1.46503 * 119.99889 * 179.97438 * 10 8 7 12 12 H 1.09003 * 112.84853 * 336.19642 * 11 10 8 13 13 C 1.53778 * 113.61393 * 107.50163 * 11 10 8 14 14 C 1.53783 * 87.08103 * 89.11451 * 13 11 10 15 15 H 1.08992 * 113.69241 * 270.87091 * 14 13 11 16 16 C 1.50701 * 113.61469 * 139.97834 * 14 13 11 17 17 C 1.38207 * 119.99822 * 142.48189 * 16 14 13 18 18 C 1.38262 * 119.99568 * 179.97438 * 17 16 14 19 19 C 1.50708 * 119.99673 * 180.02562 * 18 17 16 20 20 F 1.39900 * 109.46638 * 90.00015 * 19 18 17 21 21 F 1.39901 * 109.47089 * 209.99847 * 19 18 17 22 22 F 1.39901 * 109.47228 * 330.00323 * 19 18 17 23 23 C 1.38204 * 120.00497 * 359.97438 * 18 17 16 24 24 C 1.38254 * 119.99840 * 0.09078 * 23 18 17 25 25 C 1.38220 * 120.00044 * 359.86143 * 24 23 18 26 26 C 1.53781 * 113.61174 * 205.00112 * 11 10 8 27 27 C 1.37690 * 109.87270 * 0.26928 * 6 5 4 28 28 C 1.39086 * 133.51428 * 179.73164 * 27 6 5 29 29 C 1.37788 * 119.77993 * 179.97438 * 28 27 6 30 30 C 1.38787 * 120.66732 * 0.02562 * 29 28 27 31 31 C 1.36662 * 120.52748 * 359.57388 * 30 29 28 32 32 C 1.39597 * 119.76307 * 0.66125 * 31 30 29 33 33 H 0.96705 * 113.99780 * 299.99591 * 1 2 3 34 34 H 1.09004 * 109.46750 * 240.00650 * 2 1 3 35 35 H 1.48496 * 110.00290 * 300.00515 * 3 2 1 36 36 H 1.48503 * 109.99817 * 61.32450 * 3 2 1 37 37 H 1.08000 * 125.02801 * 0.02562 * 5 4 2 38 38 H 1.09000 * 109.47137 * 145.02670 * 7 6 5 39 39 H 1.09008 * 109.46862 * 25.03370 * 7 6 5 40 40 H 0.96999 * 119.99704 * 359.97438 * 10 8 7 41 41 H 1.09002 * 113.61450 * 334.56502 * 13 11 10 42 42 H 1.09000 * 113.61454 * 203.66342 * 13 11 10 43 43 H 1.07991 * 120.00421 * 0.02562 * 17 16 14 44 44 H 1.07997 * 120.00444 * 179.97438 * 23 18 17 45 45 H 1.08002 * 120.00345 * 179.97438 * 24 23 18 46 46 H 1.08000 * 119.99660 * 180.36499 * 25 24 23 47 47 H 1.09000 * 113.60889 * 156.33674 * 26 11 10 48 48 H 1.08999 * 113.61772 * 25.42981 * 26 11 10 49 49 H 1.08003 * 120.10390 * 0.02562 * 28 27 6 50 50 H 1.08001 * 119.66306 * 179.97438 * 29 28 27 51 51 H 1.07998 * 119.73462 * 180.02562 * 30 29 28 52 52 H 1.07996 * 120.11781 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 2.4606 -0.1377 2.3230 6 7 2.8023 -1.0991 3.2348 7 6 3.4071 -0.8407 4.5438 8 6 4.9053 -0.9626 4.4379 9 8 5.4176 -1.2388 3.3738 10 7 5.6761 -0.7648 5.5257 11 6 7.1327 -0.8839 5.4228 12 1 7.4482 -1.5117 4.5895 13 6 7.8676 0.4651 5.4931 14 6 7.9063 0.2753 7.0186 15 1 7.0349 0.6805 7.5327 16 6 9.2077 0.7024 7.6472 17 6 9.2074 1.3259 8.8807 18 6 10.4014 1.7173 9.4576 19 6 10.4012 2.3967 10.8029 20 9 10.4995 1.4327 11.8120 21 9 11.4911 3.2700 10.8844 22 9 9.2128 3.1177 10.9610 23 6 11.5951 1.4846 8.8012 24 6 11.5953 0.8622 7.5667 25 6 10.4018 0.4700 6.9903 26 6 7.8173 -1.2370 6.7538 27 6 2.4991 -2.3462 2.7359 28 6 2.6406 -3.6371 3.2337 29 6 2.2311 -4.7119 2.4750 30 6 1.6782 -4.5203 1.2165 31 6 1.5223 -3.2601 0.7113 32 6 1.9350 -2.1571 1.4608 33 1 -0.3933 0.4417 0.7651 34 1 1.7923 -0.5138 -0.8901 35 1 1.5614 2.4680 -1.2084 36 1 1.5880 2.4585 1.2243 37 1 2.5957 0.9247 2.4623 38 1 3.0335 -1.5663 5.2663 39 1 3.1467 0.1657 4.8719 40 1 5.2664 -0.5435 6.3766 41 1 7.2589 1.3110 5.1736 42 1 8.8524 0.4506 5.0261 43 1 8.2748 1.5066 9.3942 44 1 12.5277 1.7908 9.2516 45 1 12.5281 0.6807 7.0535 46 1 10.4024 -0.0216 6.0287 47 1 8.7884 -1.7168 6.6314 48 1 7.1681 -1.7651 7.4522 49 1 3.0694 -3.7965 4.2121 50 1 2.3423 -5.7136 2.8632 51 1 1.3619 -5.3736 0.6348 52 1 1.0917 -3.1187 -0.2690 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705318_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:29 Heat of formation + Delta-G solvation = -85.018050 kcal Electronic energy + Delta-G solvation = -40399.741172 eV Core-core repulsion = 34689.642163 eV Total energy + Delta-G solvation = -5710.099009 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 431.150 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -51.23106 -48.75561 -48.70713 -42.53810 -41.56957 -40.40421 -38.94689 -38.13955 -37.65475 -34.76695 -34.03090 -32.84304 -32.16349 -31.33005 -30.23286 -28.96995 -27.14799 -26.62888 -26.44027 -25.53770 -23.78577 -23.43468 -22.94677 -22.44311 -21.78741 -20.68840 -20.36753 -19.56516 -19.42537 -19.03548 -18.63699 -18.42420 -17.74187 -17.34720 -17.30294 -16.85935 -16.40578 -16.35654 -16.30747 -16.07776 -15.95082 -15.61857 -15.56892 -15.48432 -15.34530 -15.16850 -14.99347 -14.86919 -14.84674 -14.77472 -14.68541 -14.54705 -14.38570 -14.17108 -14.06798 -13.75387 -13.64848 -13.45266 -13.31609 -13.05137 -12.91358 -12.71408 -12.56301 -12.40087 -12.39065 -11.99722 -11.86988 -11.74107 -11.73107 -11.25107 -11.12239 -10.54274 -10.44696 -10.21821 -10.09490 -9.78970 -9.15202 -8.62639 -4.86333 -0.08645 0.15014 0.23290 0.64806 1.35460 1.41751 1.48157 1.58417 1.61276 1.69311 1.97790 2.20889 2.43165 2.67874 2.95706 2.96017 3.35117 3.46331 3.54123 3.60612 3.64628 3.66562 3.72432 3.76980 3.84661 3.85747 3.96539 4.04677 4.07810 4.11154 4.15887 4.22793 4.24968 4.30796 4.39739 4.50692 4.59714 4.64687 4.67514 4.72551 4.79472 4.79772 4.86363 4.90429 4.91216 4.97360 5.05392 5.14654 5.14719 5.18300 5.32172 5.44193 5.51804 5.63249 5.67351 5.74358 5.75987 5.78423 6.19742 6.24525 6.50018 6.60593 7.17401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.051 4.051 3 Si 0.765 3.235 4 C -0.216 4.216 5 C 0.075 3.925 6 N -0.465 5.465 7 C 0.086 3.914 8 C 0.495 3.505 9 O -0.565 6.565 10 N -0.695 5.695 11 C 0.117 3.883 12 H 0.082 0.918 13 C -0.140 4.140 14 C -0.066 4.066 15 H 0.116 0.884 16 C -0.073 4.073 17 C -0.076 4.076 18 C -0.195 4.195 19 C 0.506 3.494 20 F -0.184 7.184 21 F -0.183 7.183 22 F -0.181 7.181 23 C -0.087 4.087 24 C -0.119 4.119 25 C -0.086 4.086 26 C -0.126 4.126 27 C 0.092 3.908 28 C -0.133 4.133 29 C -0.107 4.107 30 C -0.154 4.154 31 C -0.088 4.088 32 C -0.116 4.116 33 H 0.384 0.616 34 H 0.103 0.897 35 H -0.303 1.303 36 H -0.259 1.259 37 H 0.197 0.803 38 H 0.143 0.857 39 H 0.161 0.839 40 H 0.420 0.580 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.154 0.846 46 H 0.151 0.849 47 H 0.100 0.900 48 H 0.089 0.911 49 H 0.133 0.867 50 H 0.145 0.855 51 H 0.136 0.864 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 0.360 4.645 5.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.159 4.159 3 Si 0.668 3.332 4 C -0.223 4.223 5 C -0.051 4.051 6 N -0.148 5.148 7 C -0.038 4.038 8 C 0.281 3.719 9 O -0.443 6.443 10 N -0.349 5.349 11 C 0.011 3.989 12 H 0.101 0.899 13 C -0.179 4.179 14 C -0.084 4.084 15 H 0.134 0.866 16 C -0.073 4.073 17 C -0.094 4.094 18 C -0.196 4.196 19 C 0.452 3.548 20 F -0.165 7.165 21 F -0.164 7.164 22 F -0.162 7.162 23 C -0.105 4.105 24 C -0.136 4.136 25 C -0.104 4.104 26 C -0.164 4.164 27 C -0.013 4.013 28 C -0.154 4.154 29 C -0.126 4.126 30 C -0.173 4.173 31 C -0.107 4.107 32 C -0.120 4.120 33 H 0.232 0.768 34 H 0.121 0.879 35 H -0.231 1.231 36 H -0.185 1.185 37 H 0.214 0.786 38 H 0.160 0.840 39 H 0.179 0.821 40 H 0.258 0.742 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.161 0.839 44 H 0.157 0.843 45 H 0.172 0.828 46 H 0.169 0.831 47 H 0.119 0.881 48 H 0.107 0.893 49 H 0.151 0.849 50 H 0.163 0.837 51 H 0.153 0.847 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.550 0.778 3.706 4.565 hybrid contribution -1.035 0.007 1.051 1.476 sum 1.514 0.785 4.758 5.054 Atomic orbital electron populations 1.86565 1.19114 1.80599 1.49852 1.24580 0.82787 1.11615 0.96934 0.94063 0.90402 0.71119 0.77605 1.20700 1.11342 0.91900 0.98367 1.22004 0.99253 0.95167 0.88640 1.43427 1.52037 1.03784 1.15537 1.21982 0.88949 1.08902 0.83974 1.21350 0.90332 0.76215 0.84005 1.90811 1.75596 1.48137 1.29751 1.45495 1.06056 1.70973 1.12331 1.21800 0.79737 0.97964 0.99364 0.89933 1.23555 1.01711 0.97670 0.94916 1.21645 0.94605 0.96723 0.95460 0.86570 1.19836 0.95960 0.97877 0.93649 1.21008 0.96894 0.95969 0.95515 1.20008 0.97519 1.07832 0.94224 1.18528 0.73281 0.76674 0.86326 1.93220 1.95825 1.63623 1.63860 1.93185 1.55433 1.70972 1.96846 1.93183 1.47564 1.79131 1.96366 1.21172 0.96919 0.96766 0.95650 1.21457 0.99915 0.97744 0.94534 1.21577 0.91562 0.96875 1.00363 1.23395 1.02036 0.95261 0.95668 1.18391 1.01552 0.86994 0.94397 1.20246 1.04612 0.89054 1.01447 1.21129 0.98179 0.99038 0.94295 1.20914 1.02313 0.96994 0.97047 1.20447 0.99094 0.91714 0.99425 1.19338 1.03974 0.93778 0.94913 0.76753 0.87883 1.23054 1.18453 0.78642 0.83978 0.82126 0.74232 0.90868 0.88395 0.83905 0.84312 0.82797 0.83142 0.88137 0.89258 0.84869 0.83722 0.84661 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.53 12.88 -148.98 -1.92 -5.45 16 2 C -0.05 -0.19 3.06 71.23 0.22 0.03 16 3 Si 0.77 -0.54 30.82 68.60 2.11 1.58 16 4 C -0.22 -1.10 5.57 -18.63 -0.10 -1.20 16 5 C 0.07 0.03 9.89 83.00 0.82 0.85 16 6 N -0.47 -0.25 2.27 -520.00 -1.18 -1.43 16 7 C 0.09 -0.75 6.48 85.63 0.55 -0.19 16 8 C 0.50 -1.76 7.90 87.66 0.69 -1.07 16 9 O -0.57 -4.47 16.02 -3.05 -0.05 -4.51 16 10 N -0.70 6.79 5.26 -440.03 -2.32 4.47 16 11 C 0.12 -0.86 4.32 45.52 0.20 -0.67 16 12 H 0.08 -0.13 7.46 -2.39 -0.02 -0.15 16 13 C -0.14 1.18 7.25 31.12 0.23 1.41 16 14 C -0.07 0.68 3.86 -11.01 -0.04 0.64 16 15 H 0.12 -1.52 8.09 -2.39 -0.02 -1.54 16 16 C -0.07 0.46 5.29 -19.87 -0.11 0.35 16 17 C -0.08 0.26 9.06 22.27 0.20 0.46 16 18 C -0.19 0.06 5.45 -19.86 -0.11 -0.05 16 19 C 0.51 1.27 3.36 71.24 0.24 1.51 16 20 F -0.18 -0.81 17.30 44.97 0.78 -0.04 16 21 F -0.18 -0.75 16.46 44.97 0.74 -0.01 16 22 F -0.18 -0.58 16.46 44.97 0.74 0.16 16 23 C -0.09 0.18 9.40 22.27 0.21 0.39 16 24 C -0.12 0.63 10.05 22.27 0.22 0.86 16 25 C -0.09 0.57 8.60 22.27 0.19 0.76 16 26 C -0.13 1.32 7.29 31.12 0.23 1.55 16 27 C 0.09 0.58 6.79 39.03 0.27 0.84 16 28 C -0.13 -0.57 10.00 22.37 0.22 -0.35 16 29 C -0.11 -0.45 10.01 22.29 0.22 -0.23 16 30 C -0.15 -0.94 9.97 22.03 0.22 -0.72 16 31 C -0.09 -0.80 10.05 22.23 0.22 -0.57 16 32 C -0.12 -1.06 6.35 -20.20 -0.13 -1.19 16 33 H 0.38 -0.12 8.70 -74.05 -0.64 -0.76 16 34 H 0.10 0.50 7.96 -2.38 -0.02 0.48 16 35 H -0.30 -2.15 7.11 99.48 0.71 -1.44 16 36 H -0.26 0.22 7.00 99.48 0.70 0.91 16 37 H 0.20 -1.24 6.27 -2.91 -0.02 -1.26 16 38 H 0.14 -1.90 8.14 -2.39 -0.02 -1.92 16 39 H 0.16 -2.64 8.12 -2.38 -0.02 -2.66 16 40 H 0.42 -6.98 8.70 -92.71 -0.81 -7.79 16 41 H 0.07 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.10 -0.84 6.32 -2.39 -0.02 -0.85 16 43 H 0.14 -0.84 7.60 -2.91 -0.02 -0.86 16 44 H 0.14 -0.50 7.60 -2.91 -0.02 -0.52 16 45 H 0.15 -1.45 8.06 -2.91 -0.02 -1.47 16 46 H 0.15 -1.57 6.67 -2.91 -0.02 -1.59 16 47 H 0.10 -1.02 7.72 -2.39 -0.02 -1.03 16 48 H 0.09 -1.06 8.14 -2.39 -0.02 -1.08 16 49 H 0.13 -0.09 8.06 -2.91 -0.02 -0.12 16 50 H 0.15 -0.13 8.06 -2.91 -0.02 -0.15 16 51 H 0.14 0.29 8.06 -2.91 -0.02 0.27 16 52 H 0.12 0.97 8.06 -2.91 -0.02 0.95 16 Total: 0.00 -28.11 447.54 3.16 -24.95 By element: Atomic # 1 Polarization: -22.72 SS G_CDS: -0.41 Total: -23.14 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 4.67 Total: 3.42 kcal Atomic # 7 Polarization: 6.54 SS G_CDS: -3.50 Total: 3.04 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -1.97 Total: -9.96 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 2.26 Total: 0.11 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: 2.11 Total: 1.58 kcal Total: -28.11 3.16 -24.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705318_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.070 kcal (2) G-P(sol) polarization free energy of solvation -28.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds