Wall clock time and date at job start Tue Mar 9 2021 13:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35537 * 125.67957 * 2 1 4 4 C 1.35442 * 108.87398 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.06671 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.47381 * 245.02097 * 5 4 3 7 7 Si 1.86293 * 109.47369 * 5.02646 * 5 4 3 8 8 C 1.39837 * 107.86837 * 0.26015 * 4 3 2 9 9 C 1.37651 * 125.67851 * 180.02562 * 2 1 3 10 10 C 1.46672 * 126.23621 * 0.02562 * 9 2 1 11 11 O 1.21698 * 120.00052 * 5.28953 * 10 9 2 12 12 N 1.34773 * 120.00557 * 185.28715 * 10 9 2 13 13 C 1.46496 * 120.00706 * 185.20870 * 12 10 9 14 14 H 1.09007 * 112.84402 * 25.32979 * 13 12 10 15 15 C 1.53780 * 113.62179 * 156.52893 * 13 12 10 16 16 C 1.53786 * 87.07944 * 89.11621 * 15 13 12 17 17 H 1.08995 * 113.61449 * 270.80044 * 16 15 13 18 18 C 1.50694 * 113.61136 * 139.98331 * 16 15 13 19 19 C 1.38211 * 119.97675 * 299.72570 * 18 16 15 20 20 C 1.38481 * 120.02380 * 179.76932 * 19 18 16 21 21 F 1.35100 * 120.01268 * 180.25115 * 20 19 18 22 22 C 1.38419 * 119.97433 * 0.48504 * 20 19 18 23 23 C 1.38422 * 119.95000 * 359.76784 * 22 20 19 24 24 F 1.35099 * 120.01050 * 180.02562 * 23 22 20 25 25 C 1.38208 * 119.97389 * 119.99908 * 18 16 15 26 26 C 1.53780 * 113.61652 * 254.14156 * 13 12 10 27 27 H 1.08993 * 109.47011 * 85.93929 * 1 2 3 28 28 H 1.09007 * 109.46886 * 205.94103 * 1 2 3 29 29 H 1.08996 * 109.47134 * 325.94237 * 1 2 3 30 30 H 1.08003 * 125.56139 * 0.03325 * 3 2 1 31 31 H 1.09004 * 109.46867 * 125.02575 * 5 4 3 32 32 H 0.96705 * 113.99471 * 60.00181 * 6 5 4 33 33 H 1.48501 * 109.99910 * 58.67730 * 7 5 4 34 34 H 1.48496 * 110.00495 * 179.97438 * 7 5 4 35 35 H 1.07997 * 126.45889 * 179.73774 * 8 4 3 36 36 H 0.97006 * 119.99954 * 5.20688 * 12 10 9 37 37 H 1.08997 * 113.61784 * 203.66520 * 15 13 12 38 38 H 1.09004 * 113.61191 * 334.48840 * 15 13 12 39 39 H 1.08001 * 119.98344 * 359.97438 * 19 18 16 40 40 H 1.07996 * 120.02625 * 179.79007 * 22 20 19 41 41 H 1.08005 * 119.98851 * 359.97438 * 25 18 16 42 42 H 1.08998 * 113.61573 * 25.42645 * 26 13 12 43 43 H 1.08997 * 113.62024 * 156.33204 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5521 0.7094 -0.0006 5 6 4.7536 1.6190 -0.0013 6 8 5.4763 1.4527 -1.2229 7 14 4.1928 3.3888 0.1525 8 6 3.5780 -0.6888 -0.0070 9 6 2.2678 -1.1181 -0.0005 10 6 1.8125 -2.5124 -0.0017 11 8 0.6260 -2.7650 -0.0994 12 7 2.7079 -3.5139 0.1055 13 6 2.2672 -4.9062 -0.0101 14 1 1.3521 -5.0135 -0.5926 15 6 3.3849 -5.8731 -0.4352 16 6 3.7006 -6.0413 1.0605 17 1 4.4215 -5.3166 1.4388 18 6 4.0346 -7.4578 1.4513 19 6 3.1071 -8.4642 1.2590 20 6 3.4148 -9.7671 1.6133 21 9 2.5099 -10.7515 1.4205 22 6 4.6481 -10.0595 2.1696 23 6 5.5743 -9.0499 2.3666 24 9 6.7785 -9.3340 2.9090 25 6 5.2662 -7.7486 2.0070 26 6 2.2342 -5.6554 1.3325 27 1 -0.3633 0.0728 -1.0250 28 1 -0.3633 -0.9242 0.4496 29 1 -0.3633 0.8514 0.5755 30 1 1.9082 2.1236 0.0005 31 1 5.3997 1.3681 0.8400 32 1 4.9618 1.6589 -2.0153 33 1 3.4128 3.5675 1.4035 34 1 5.3684 4.2960 0.1536 35 1 4.4584 -1.3143 -0.0130 36 1 3.6444 -3.3129 0.2592 37 1 3.0180 -6.7835 -0.9091 38 1 4.1847 -5.3944 -1.0004 39 1 2.1432 -8.2350 0.8291 40 1 4.8877 -11.0747 2.4494 41 1 5.9887 -6.9607 2.1606 42 1 2.1061 -5.0010 2.1947 43 1 1.5532 -6.5064 1.3410 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705374_10803934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:45 Heat of formation + Delta-G solvation = -46.500301 kcal Electronic energy + Delta-G solvation = -29427.693681 eV Core-core repulsion = 24884.472563 eV Total energy + Delta-G solvation = -4543.221119 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.128 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.09170 -50.06976 -42.56040 -41.44015 -40.00406 -38.56806 -37.62274 -34.89996 -33.71955 -32.13270 -31.38760 -30.62927 -28.31543 -26.72326 -26.65159 -25.65201 -24.24913 -23.81132 -22.84461 -21.28765 -20.70755 -20.18389 -19.01720 -18.74891 -18.12991 -17.72000 -17.44557 -17.06332 -17.04130 -16.79995 -16.73333 -16.57803 -16.38831 -15.97088 -15.69508 -15.62506 -15.39639 -15.24228 -15.07663 -14.73074 -14.41123 -14.06797 -14.04486 -13.73338 -13.49848 -13.45876 -13.24717 -13.12548 -13.08687 -12.92891 -12.78275 -12.26630 -12.09332 -11.91847 -11.72336 -11.32629 -11.15680 -10.28965 -10.19631 -9.92042 -9.82790 -9.68445 -9.24903 -4.93372 -0.11810 -0.10090 0.40666 1.43627 1.53916 1.58168 1.74642 2.06068 2.23216 2.27930 2.30593 2.76122 3.24467 3.37051 3.54475 3.62858 3.68013 3.73936 3.76525 3.85418 3.89395 3.90770 4.05184 4.06364 4.11105 4.25535 4.38961 4.42114 4.57444 4.68427 4.70682 4.72664 4.73445 4.76451 4.77380 4.79013 4.85709 4.95837 4.96553 5.02987 5.11856 5.21382 5.31034 5.55461 5.69370 5.70286 5.90410 6.17790 6.45334 6.92060 7.11161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.413 5.413 3 C 0.034 3.966 4 C -0.220 4.220 5 C -0.035 4.035 6 O -0.560 6.560 7 Si 0.776 3.224 8 C -0.111 4.111 9 C -0.079 4.079 10 C 0.590 3.410 11 O -0.581 6.581 12 N -0.690 5.690 13 C 0.119 3.881 14 H 0.091 0.909 15 C -0.123 4.123 16 C -0.068 4.068 17 H 0.122 0.878 18 C -0.009 4.009 19 C -0.158 4.158 20 C 0.119 3.881 21 F -0.140 7.140 22 C -0.205 4.205 23 C 0.117 3.883 24 F -0.140 7.140 25 C -0.156 4.156 26 C -0.143 4.143 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.201 0.799 31 H 0.102 0.898 32 H 0.393 0.607 33 H -0.284 1.284 34 H -0.306 1.306 35 H 0.158 0.842 36 H 0.416 0.584 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.161 0.839 42 H 0.069 0.931 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.831 4.170 -2.377 4.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.085 5.085 3 C -0.102 4.102 4 C -0.227 4.227 5 C -0.146 4.146 6 O -0.368 6.368 7 Si 0.683 3.317 8 C -0.137 4.137 9 C -0.192 4.192 10 C 0.379 3.621 11 O -0.463 6.463 12 N -0.341 5.341 13 C 0.014 3.986 14 H 0.109 0.891 15 C -0.161 4.161 16 C -0.086 4.086 17 H 0.140 0.860 18 C -0.009 4.009 19 C -0.177 4.177 20 C 0.099 3.901 21 F -0.119 7.119 22 C -0.225 4.225 23 C 0.098 3.902 24 F -0.119 7.119 25 C -0.174 4.174 26 C -0.181 4.181 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.217 0.783 31 H 0.120 0.880 32 H 0.243 0.757 33 H -0.211 1.211 34 H -0.234 1.234 35 H 0.175 0.825 36 H 0.253 0.747 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.176 0.824 40 H 0.169 0.831 41 H 0.179 0.821 42 H 0.088 0.912 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.575 4.430 -1.577 4.959 hybrid contribution 0.684 -1.065 0.696 1.445 sum -0.890 3.366 -0.881 3.591 Atomic orbital electron populations 1.22434 0.74889 1.05745 1.04871 1.44034 1.07628 1.04855 1.51943 1.22327 0.89778 0.92525 1.05618 1.19894 0.94163 0.94850 1.13743 1.24427 0.92522 1.08129 0.89491 1.86447 1.42150 1.92156 1.16007 0.94015 0.80264 0.72694 0.84767 1.21424 0.94293 0.95172 1.02854 1.20058 0.90928 0.87556 1.20639 1.17159 0.85277 0.84224 0.75428 1.90786 1.17598 1.85301 1.52576 1.45219 1.11590 1.04643 1.72627 1.21857 0.99162 0.79665 0.97940 0.89109 1.23406 0.98086 0.99577 0.95022 1.21762 0.97968 0.91555 0.97320 0.86013 1.19449 0.91514 0.95608 0.94337 1.21276 1.02555 0.90172 1.03705 1.17421 0.86839 0.85820 1.00000 1.91532 1.66037 1.61343 1.92950 1.21183 0.93722 1.01606 1.05953 1.17460 0.81122 0.93980 0.97630 1.91531 1.42530 1.94408 1.83398 1.21365 0.99019 0.95215 1.01839 1.23634 0.95950 1.00660 0.97865 0.89487 0.89701 0.87255 0.78260 0.88014 0.75747 1.21114 1.23398 0.82451 0.74671 0.87477 0.88774 0.82383 0.83130 0.82122 0.91184 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.16 10.64 127.77 1.36 1.20 16 2 N -0.41 -0.15 3.16 -534.33 -1.69 -1.84 16 3 C 0.03 -0.10 9.94 83.47 0.83 0.72 16 4 C -0.22 0.31 5.43 -20.12 -0.11 0.20 16 5 C -0.03 0.07 3.02 71.24 0.22 0.29 16 6 O -0.56 0.57 12.88 -148.98 -1.92 -1.35 16 7 Si 0.78 -3.18 30.60 68.60 2.10 -1.08 16 8 C -0.11 0.05 10.28 22.57 0.23 0.28 16 9 C -0.08 -0.17 6.88 40.35 0.28 0.10 16 10 C 0.59 2.24 7.77 86.45 0.67 2.91 16 11 O -0.58 -5.99 14.31 -4.34 -0.06 -6.06 16 12 N -0.69 2.01 5.24 -444.01 -2.33 -0.31 16 13 C 0.12 -0.46 4.26 45.52 0.19 -0.27 16 14 H 0.09 0.00 7.57 -2.38 -0.02 -0.01 16 15 C -0.12 1.00 7.29 31.12 0.23 1.23 16 16 C -0.07 0.52 3.87 -10.92 -0.04 0.48 16 17 H 0.12 -1.27 8.09 -2.39 -0.02 -1.29 16 18 C -0.01 0.04 5.29 -19.88 -0.11 -0.07 16 19 C -0.16 0.37 8.60 22.32 0.19 0.56 16 20 C 0.12 0.20 7.30 22.37 0.16 0.36 16 21 F -0.14 -0.63 17.27 44.97 0.78 0.14 16 22 C -0.21 -0.38 10.01 22.36 0.22 -0.16 16 23 C 0.12 0.19 7.30 22.37 0.16 0.35 16 24 F -0.14 -0.62 17.27 44.97 0.78 0.16 16 25 C -0.16 0.40 9.69 22.32 0.22 0.61 16 26 C -0.14 0.71 7.27 31.21 0.23 0.94 16 27 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.08 0.19 6.21 -2.38 -0.01 0.17 16 29 H 0.11 -0.87 8.14 -2.39 -0.02 -0.89 16 30 H 0.20 -1.93 6.21 -2.91 -0.02 -1.95 16 31 H 0.10 -0.07 7.96 -2.39 -0.02 -0.09 16 32 H 0.39 -3.40 8.70 -74.05 -0.64 -4.04 16 33 H -0.28 -0.12 7.11 99.48 0.71 0.58 16 34 H -0.31 -1.33 7.11 99.48 0.71 -0.62 16 35 H 0.16 -0.66 7.49 -2.91 -0.02 -0.69 16 36 H 0.42 -3.24 7.66 -92.70 -0.71 -3.95 16 37 H 0.11 -0.92 7.73 -2.39 -0.02 -0.94 16 38 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H 0.16 -0.88 6.64 -2.91 -0.02 -0.90 16 40 H 0.15 0.06 8.06 -2.91 -0.02 0.04 16 41 H 0.16 -1.05 8.05 -2.91 -0.02 -1.07 16 42 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.10 -0.57 6.30 -2.39 -0.02 -0.59 16 Total: 0.00 -20.69 369.02 2.36 -18.32 By element: Atomic # 1 Polarization: -17.50 SS G_CDS: -0.23 Total: -17.73 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 4.94 Total: 9.75 kcal Atomic # 7 Polarization: 1.86 SS G_CDS: -4.01 Total: -2.15 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -1.98 Total: -7.41 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 1.55 Total: 0.30 kcal Atomic # 14 Polarization: -3.18 SS G_CDS: 2.10 Total: -1.08 kcal Total: -20.69 2.36 -18.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_10803934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.177 kcal (2) G-P(sol) polarization free energy of solvation -20.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds