Wall clock time and date at job start Tue Mar 9 2021 13:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86302 * 109.47071 * 2 1 4 4 C 1.50702 * 109.46760 * 240.00516 * 2 1 3 5 5 C 1.36446 * 120.29365 * 240.02564 * 4 2 1 6 6 C 1.40099 * 119.25374 * 179.72771 * 5 4 2 7 7 C 1.40855 * 132.86468 * 179.63725 * 6 5 4 8 8 C 1.46568 * 126.58056 * 0.69390 * 7 6 5 9 9 O 1.21727 * 119.99574 * 359.71577 * 8 7 6 10 10 N 1.34769 * 120.00107 * 179.70975 * 8 7 6 11 11 C 1.46501 * 120.00014 * 179.97438 * 10 8 7 12 12 H 1.09004 * 112.85074 * 336.20143 * 11 10 8 13 13 C 1.53782 * 113.61142 * 107.50467 * 11 10 8 14 14 C 1.53962 * 87.11063 * 89.18830 * 13 11 10 15 15 H 1.08993 * 113.61598 * 270.84305 * 14 13 11 16 16 C 1.50700 * 113.66521 * 139.88647 * 14 13 11 17 17 C 1.38205 * 119.97722 * 322.27892 * 16 14 13 18 18 C 1.38475 * 120.02365 * 179.76583 * 17 16 14 19 19 F 1.35107 * 120.01405 * 180.24866 * 18 17 16 20 20 C 1.38420 * 119.97686 * 0.52757 * 18 17 16 21 21 C 1.38421 * 119.94754 * 359.72907 * 20 18 17 22 22 F 1.35091 * 120.01217 * 180.02562 * 21 20 18 23 23 C 1.38214 * 119.97293 * 142.55256 * 16 14 13 24 24 C 1.53781 * 113.61619 * 205.00312 * 11 10 8 25 25 C 1.40555 * 106.83840 * 180.43670 * 7 6 5 26 26 N 1.30736 * 108.74661 * 0.22685 * 25 7 6 27 27 N 1.36576 * 120.22535 * 0.52407 * 6 5 4 28 28 C 1.36237 * 120.08477 * 359.47057 * 27 6 5 29 29 C 1.35189 * 120.70542 * 0.25277 * 28 27 6 30 30 H 0.96700 * 114.00694 * 59.99058 * 1 2 3 31 31 H 1.08997 * 109.47485 * 120.00886 * 2 1 3 32 32 H 1.48503 * 109.99680 * 60.00722 * 3 2 1 33 33 H 1.48506 * 109.99321 * 181.32042 * 3 2 1 34 34 H 1.07996 * 120.37688 * 359.97395 * 5 4 2 35 35 H 0.97001 * 120.00013 * 0.02562 * 10 8 7 36 36 H 1.08997 * 113.61668 * 203.66381 * 13 11 10 37 37 H 1.08998 * 113.61674 * 334.48890 * 13 11 10 38 38 H 1.08000 * 119.98682 * 359.97438 * 17 16 14 39 39 H 1.07996 * 120.02437 * 179.69889 * 20 18 17 40 40 H 1.07999 * 119.98318 * 359.97438 * 23 16 14 41 41 H 1.09002 * 113.61445 * 25.43587 * 24 11 10 42 42 H 1.09002 * 113.61408 * 156.25317 * 24 11 10 43 43 H 1.08000 * 125.62445 * 180.20644 * 25 7 6 44 44 H 1.08003 * 119.64918 * 180.23605 * 28 27 6 45 45 H 1.08000 * 119.84222 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.7156 -1.8206 -1.1125 6 6 3.1657 -2.4672 -2.2710 7 6 3.9733 -3.6016 -2.4827 8 6 4.5730 -4.4520 -1.4505 9 8 4.3936 -4.1986 -0.2735 10 7 5.3228 -5.5144 -1.8045 11 6 5.9226 -6.3640 -0.7727 12 1 6.0539 -5.8469 0.1779 13 6 5.2491 -7.7400 -0.6397 14 6 6.2424 -8.2424 -1.7033 15 1 5.8838 -8.1247 -2.7258 16 6 6.7797 -9.6226 -1.4252 17 6 7.0609 -10.0057 -0.1274 18 6 7.5500 -11.2754 0.1297 19 9 7.8201 -11.6514 1.3990 20 6 7.7676 -12.1573 -0.9147 21 6 7.4906 -11.7708 -2.2147 22 9 7.7020 -12.6306 -3.2349 23 6 6.9962 -10.5026 -2.4689 24 6 7.1800 -7.1127 -1.2454 25 6 4.0889 -3.7651 -3.8740 26 7 3.4167 -2.8130 -4.4662 27 7 2.8303 -1.9828 -3.5031 28 6 2.0466 -0.8736 -3.6107 29 6 1.5963 -0.2368 -2.5065 30 1 -0.3934 0.4418 -0.7649 31 1 1.7924 -0.5139 0.8899 32 1 1.5616 2.4678 1.2086 33 1 3.5346 1.7701 -0.0322 34 1 2.9832 -2.1990 -0.1370 35 1 5.4660 -5.7160 -2.7424 36 1 5.3879 -8.2015 0.3380 37 1 4.2102 -7.7514 -0.9694 38 1 6.8959 -9.3156 0.6868 39 1 8.1537 -13.1461 -0.7155 40 1 6.7798 -10.2007 -3.4830 41 1 7.7004 -6.6178 -2.0654 42 1 7.8474 -7.4013 -0.4334 43 1 4.6421 -4.5479 -4.3715 44 1 1.7825 -0.4989 -4.5886 45 1 0.9756 0.6412 -2.6080 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705374_11618758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:52 Heat of formation + Delta-G solvation = 5.724658 kcal Electronic energy + Delta-G solvation = -33570.311664 eV Core-core repulsion = 28579.250857 eV Total energy + Delta-G solvation = -4991.060807 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.123 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -50.08868 -50.06498 -43.29997 -41.50595 -40.12571 -39.31140 -38.52203 -37.20089 -34.58914 -34.13063 -32.09570 -32.01017 -31.36051 -30.20326 -27.44009 -26.69409 -26.47479 -24.99426 -24.10822 -23.79284 -23.12784 -22.76589 -21.40260 -20.36574 -19.25017 -18.83808 -18.46711 -18.12721 -17.81017 -17.52072 -17.40677 -17.05974 -17.03249 -16.92488 -16.71617 -16.45194 -16.38465 -15.98038 -15.81680 -15.52792 -15.41921 -15.37015 -15.29407 -14.62192 -14.46797 -14.23174 -14.03125 -14.00235 -13.70016 -13.49837 -13.47230 -13.12883 -13.08036 -12.93020 -12.77429 -12.39949 -12.23536 -12.07849 -11.97385 -11.69201 -11.56151 -11.29897 -11.00220 -10.78033 -10.25735 -10.10305 -9.90606 -9.82017 -8.79562 -5.07370 -0.56414 -0.11131 -0.09752 -0.09226 1.01374 1.06132 1.20553 1.67789 1.96186 2.08322 2.18179 2.24690 2.47407 2.76756 3.09241 3.24536 3.25971 3.38601 3.47107 3.57600 3.60813 3.68643 3.75688 3.76603 3.88448 3.90505 3.92518 3.98340 4.07035 4.12877 4.19944 4.36620 4.39972 4.60356 4.63930 4.72537 4.73926 4.77332 4.78537 4.80094 4.91308 4.96678 4.98395 5.04936 5.11100 5.15542 5.17854 5.29682 5.35368 5.63966 5.68757 5.71047 6.29964 6.59793 6.76825 7.28995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.077 4.077 3 Si 0.815 3.185 4 C -0.054 4.054 5 C -0.135 4.135 6 C 0.150 3.850 7 C -0.347 4.347 8 C 0.600 3.400 9 O -0.594 6.594 10 N -0.696 5.696 11 C 0.117 3.883 12 H 0.084 0.916 13 C -0.144 4.144 14 C -0.065 4.065 15 H 0.127 0.873 16 C -0.009 4.009 17 C -0.160 4.160 18 C 0.117 3.883 19 F -0.141 7.141 20 C -0.205 4.205 21 C 0.118 3.882 22 F -0.140 7.140 23 C -0.154 4.154 24 C -0.124 4.124 25 C 0.132 3.868 26 N -0.338 5.338 27 N -0.273 5.273 28 C 0.115 3.885 29 C -0.146 4.146 30 H 0.401 0.599 31 H 0.105 0.895 32 H -0.290 1.290 33 H -0.303 1.303 34 H 0.137 0.863 35 H 0.415 0.585 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.164 0.836 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.236 0.764 44 H 0.214 0.786 45 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.347 6.055 -6.807 9.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.185 4.185 3 Si 0.719 3.281 4 C -0.060 4.060 5 C -0.155 4.155 6 C 0.029 3.971 7 C -0.361 4.361 8 C 0.391 3.609 9 O -0.477 6.477 10 N -0.347 5.347 11 C 0.012 3.988 12 H 0.102 0.898 13 C -0.183 4.183 14 C -0.083 4.083 15 H 0.145 0.855 16 C -0.009 4.009 17 C -0.179 4.179 18 C 0.098 3.902 19 F -0.120 7.120 20 C -0.225 4.225 21 C 0.098 3.902 22 F -0.118 7.118 23 C -0.172 4.172 24 C -0.161 4.161 25 C -0.048 4.048 26 N -0.158 5.158 27 N -0.037 5.037 28 C -0.010 4.010 29 C -0.167 4.167 30 H 0.252 0.748 31 H 0.123 0.877 32 H -0.218 1.218 33 H -0.230 1.230 34 H 0.155 0.845 35 H 0.252 0.748 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.173 0.827 39 H 0.168 0.832 40 H 0.182 0.818 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.252 0.748 44 H 0.231 0.769 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.182 6.845 -6.270 9.535 hybrid contribution 0.795 -1.983 1.128 2.416 sum -1.387 4.862 -5.141 7.211 Atomic orbital electron populations 1.86585 1.15942 1.82271 1.50760 1.25322 0.85970 1.11189 0.95993 0.93874 0.76914 0.72273 0.85041 1.20766 0.94106 0.93595 0.97520 1.20640 1.01080 0.96532 0.97252 1.19485 0.96053 0.94662 0.86917 1.19692 1.17497 1.04591 0.94352 1.17046 0.77294 0.79787 0.86822 1.90762 1.63098 1.73398 1.20416 1.45193 1.51545 1.27474 1.10465 1.21803 0.94516 0.90260 0.92268 0.89767 1.23620 0.99222 0.95459 0.99965 1.21739 0.96719 0.88481 1.01363 0.85458 1.19461 0.94765 0.95763 0.90895 1.21273 1.02436 0.95011 0.99154 1.17432 1.00155 0.94084 0.78532 1.91531 1.91558 1.91838 1.37036 1.21179 1.07362 1.02631 0.91304 1.17452 1.00308 0.88753 0.83641 1.91529 1.92591 1.69587 1.58108 1.21372 1.02119 0.91519 1.02219 1.23400 0.95467 0.94453 1.02822 1.24597 0.93432 0.95829 0.90991 1.77559 1.19630 1.07215 1.11413 1.46380 1.32556 1.19706 1.05068 1.22470 0.90579 0.83923 1.04064 1.21356 1.03511 1.03596 0.88212 0.74791 0.87737 1.21758 1.23034 0.84518 0.74771 0.88481 0.91076 0.82674 0.83154 0.81818 0.88657 0.87931 0.74844 0.76949 0.76163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.03 12.87 -148.98 -1.92 0.11 16 2 C -0.08 0.23 2.84 71.24 0.20 0.43 16 3 Si 0.82 -4.47 31.96 68.60 2.19 -2.28 16 4 C -0.05 0.11 4.53 -19.82 -0.09 0.02 16 5 C -0.14 -0.76 9.35 22.30 0.21 -0.55 16 6 C 0.15 0.99 6.76 39.50 0.27 1.25 16 7 C -0.35 -1.88 6.17 -19.90 -0.12 -2.00 16 8 C 0.60 4.18 7.78 86.42 0.67 4.86 16 9 O -0.59 -9.14 15.30 -4.43 -0.07 -9.21 16 10 N -0.70 1.19 5.25 -444.08 -2.33 -1.14 16 11 C 0.12 -0.24 4.32 45.52 0.20 -0.04 16 12 H 0.08 0.27 7.46 -2.38 -0.02 0.26 16 13 C -0.14 0.54 7.26 31.18 0.23 0.76 16 14 C -0.06 0.48 3.87 -10.95 -0.04 0.44 16 15 H 0.13 -1.44 8.09 -2.39 -0.02 -1.46 16 16 C -0.01 0.03 5.29 -19.88 -0.11 -0.07 16 17 C -0.16 0.23 8.57 22.32 0.19 0.42 16 18 C 0.12 0.28 7.30 22.37 0.16 0.44 16 19 F -0.14 -0.76 17.27 44.97 0.78 0.01 16 20 C -0.21 -0.45 10.01 22.36 0.22 -0.23 16 21 C 0.12 0.19 7.30 22.37 0.16 0.35 16 22 F -0.14 -0.59 17.27 44.97 0.78 0.19 16 23 C -0.15 0.42 9.69 22.32 0.22 0.64 16 24 C -0.12 0.89 7.28 31.12 0.23 1.11 16 25 C 0.13 -0.01 11.44 85.42 0.98 0.96 16 26 N -0.34 -1.17 12.57 -56.62 -0.71 -1.88 16 27 N -0.27 -0.71 3.86 -187.27 -0.72 -1.43 16 28 C 0.12 -0.70 11.17 83.31 0.93 0.23 16 29 C -0.15 1.40 8.38 22.03 0.18 1.59 16 30 H 0.40 -5.95 8.08 -74.06 -0.60 -6.55 16 31 H 0.11 0.06 7.71 -2.39 -0.02 0.04 16 32 H -0.29 -0.54 7.11 99.48 0.71 0.17 16 33 H -0.30 -0.78 7.11 99.48 0.71 -0.07 16 34 H 0.14 1.30 7.01 -2.91 -0.02 1.27 16 35 H 0.41 -3.65 7.62 -92.71 -0.71 -4.35 16 36 H 0.10 -0.37 6.32 -2.39 -0.02 -0.38 16 37 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.16 -0.64 6.67 -2.91 -0.02 -0.66 16 39 H 0.15 0.11 8.06 -2.91 -0.02 0.09 16 40 H 0.16 -1.19 8.05 -2.91 -0.02 -1.22 16 41 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 42 H 0.10 -0.72 7.71 -2.39 -0.02 -0.74 16 43 H 0.24 -2.40 7.46 -2.91 -0.02 -2.42 16 44 H 0.21 -2.89 8.06 -2.91 -0.02 -2.92 16 45 H 0.22 -4.70 7.31 -2.91 -0.02 -4.72 16 Total: 0.00 -32.24 391.80 2.51 -29.73 By element: Atomic # 1 Polarization: -24.54 SS G_CDS: -0.17 Total: -24.72 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 4.69 Total: 10.61 kcal Atomic # 7 Polarization: -0.68 SS G_CDS: -3.77 Total: -4.45 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -1.99 Total: -9.10 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 1.55 Total: 0.20 kcal Atomic # 14 Polarization: -4.47 SS G_CDS: 2.19 Total: -2.28 kcal Total: -32.24 2.51 -29.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_11618758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.454 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds