Wall clock time and date at job start Tue Mar 9 2021 13:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35662 * 116.99613 * 2 1 4 4 C 1.38399 * 120.12190 * 359.97438 * 3 2 1 5 5 C 1.38727 * 120.03240 * 180.02562 * 4 3 2 6 6 O 1.35717 * 119.86196 * 179.97438 * 5 4 3 7 7 C 1.42894 * 117.00034 * 0.02562 * 6 5 4 8 8 C 1.39145 * 120.27378 * 0.02833 * 5 4 3 9 9 C 1.50694 * 119.88062 * 179.97438 * 8 5 4 10 10 O 1.42901 * 109.47130 * 74.99501 * 9 8 5 11 11 Si 1.86297 * 109.47302 * 194.99790 * 9 8 5 12 12 C 1.37586 * 120.23889 * 359.66709 * 8 5 4 13 13 C 1.39820 * 119.96182 * 0.60518 * 12 8 5 14 14 C 1.47304 * 120.13389 * 179.69392 * 13 12 8 15 15 O 1.21622 * 120.00040 * 179.72688 * 14 13 12 16 16 N 1.34773 * 119.99813 * 359.72933 * 14 13 12 17 17 C 1.46506 * 119.99787 * 179.97438 * 16 14 13 18 18 H 1.08995 * 112.84795 * 23.80134 * 17 16 14 19 19 C 1.53787 * 113.61229 * 154.99999 * 17 16 14 20 20 C 1.53779 * 87.07976 * 89.19887 * 19 17 16 21 21 H 1.09000 * 113.61503 * 270.79610 * 20 19 17 22 22 C 1.50704 * 113.61049 * 139.97872 * 20 19 17 23 23 C 1.38215 * 119.97077 * 121.52893 * 22 20 19 24 24 C 1.38476 * 120.02035 * 179.97438 * 23 22 20 25 25 F 1.35105 * 120.01106 * 179.97438 * 24 23 22 26 26 C 1.38413 * 119.97610 * 359.97438 * 24 23 22 27 27 C 1.38423 * 119.95254 * 359.97438 * 26 24 23 28 28 F 1.35102 * 120.01392 * 180.02562 * 27 26 24 29 29 C 1.38203 * 119.97710 * 301.50480 * 22 20 19 30 30 C 1.53785 * 87.17521 * 25.39026 * 20 19 17 31 31 H 1.09006 * 109.47030 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46849 * 299.99333 * 1 2 3 33 33 H 1.09000 * 109.47654 * 59.99710 * 1 2 3 34 34 H 1.08004 * 119.98534 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.47390 * 59.99767 * 7 6 5 36 36 H 1.09004 * 109.46997 * 179.97438 * 7 6 5 37 37 H 1.09006 * 109.47099 * 299.99755 * 7 6 5 38 38 H 1.09000 * 109.47254 * 314.99886 * 9 8 5 39 39 H 0.96699 * 114.00498 * 60.00500 * 10 9 8 40 40 H 1.48503 * 110.00161 * 180.02562 * 11 9 8 41 41 H 1.48502 * 109.99778 * 301.31618 * 11 9 8 42 42 H 1.07994 * 120.01792 * 180.32456 * 12 8 5 43 43 H 0.97002 * 120.00404 * 359.97438 * 16 14 13 44 44 H 1.09004 * 113.61312 * 334.65071 * 19 17 16 45 45 H 1.09005 * 113.68511 * 203.76035 * 19 17 16 46 46 H 1.07994 * 119.98979 * 359.72551 * 23 22 20 47 47 H 1.08010 * 120.02485 * 180.02562 * 26 24 23 48 48 H 1.08000 * 119.98881 * 0.02562 * 29 22 20 49 49 H 1.08993 * 113.61465 * 89.15823 * 30 20 19 50 50 H 1.08998 * 113.61307 * 220.05885 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2934 2.3711 -0.0005 5 6 1.9251 3.6062 -0.0011 6 8 1.1849 4.7437 -0.0021 7 6 -0.2361 4.5931 -0.0021 8 6 3.3144 3.6836 -0.0017 9 6 3.9913 5.0299 -0.0028 10 8 3.8941 5.6130 1.2982 11 14 5.7859 4.8224 -0.4579 12 6 4.0723 2.5353 0.0052 13 6 3.4461 1.2852 0.0000 14 6 4.2539 0.0534 0.0005 15 8 3.7066 -1.0327 0.0009 16 7 5.5994 0.1300 0.0004 17 6 6.4029 -1.0951 0.0015 18 1 5.8665 -1.9533 -0.4032 19 6 7.8086 -0.9103 -0.5942 20 6 8.2754 -0.5419 0.8240 21 1 8.1915 0.5213 1.0489 22 6 9.6239 -1.1113 1.1825 23 6 10.6558 -0.2664 1.5454 24 6 11.8951 -0.7885 1.8756 25 9 12.9038 0.0376 2.2297 26 6 12.1001 -2.1570 1.8426 27 6 11.0656 -3.0022 1.4801 28 9 11.2642 -4.3382 1.4481 29 6 9.8276 -2.4778 1.1488 30 6 7.0951 -1.3774 1.3473 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 0.2148 2.3165 -0.0005 35 1 -0.5433 4.0446 0.8884 36 1 -0.7058 5.5767 -0.0025 37 1 -0.5432 4.0430 -0.8916 38 1 3.5050 5.6805 -0.7297 39 1 4.3067 5.0870 1.9968 40 1 6.4649 6.1431 -0.4620 41 1 6.4526 3.9121 0.5075 42 1 5.1503 2.5996 0.0100 43 1 6.0360 0.9963 -0.0003 44 1 7.8771 -0.0862 -1.3043 45 1 8.2485 -1.8330 -0.9728 46 1 10.4966 0.8015 1.5675 47 1 13.0663 -2.5651 2.1004 48 1 9.0206 -3.1371 0.8651 49 1 7.3385 -2.4286 1.5011 50 1 6.5885 -0.9298 2.2023 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705374_12297780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:59 Heat of formation + Delta-G solvation = -133.967287 kcal Electronic energy + Delta-G solvation = -38284.463496 eV Core-core repulsion = 32881.747292 eV Total energy + Delta-G solvation = -5402.716204 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.147 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -50.07099 -50.04899 -42.13460 -41.39519 -40.32152 -39.80056 -38.62286 -38.39042 -37.04841 -34.56819 -32.30939 -32.19419 -31.45710 -31.17859 -28.97438 -28.19360 -26.66181 -26.59710 -26.08930 -24.69624 -23.92343 -23.20041 -22.57005 -21.66209 -20.41986 -19.97507 -19.08843 -18.71863 -18.15697 -18.04889 -17.95489 -17.41125 -17.22859 -17.09112 -17.04040 -16.74755 -16.60264 -16.39619 -16.36857 -16.30451 -15.98352 -15.82293 -15.74795 -15.51055 -15.41865 -15.32015 -15.00479 -14.52530 -14.19591 -14.03658 -13.96339 -13.69054 -13.55474 -13.41142 -13.19784 -13.05726 -12.90746 -12.75143 -12.67721 -12.52151 -12.51153 -12.19800 -12.05008 -11.76726 -11.67027 -11.64153 -11.26098 -10.90468 -10.51946 -10.09129 -9.91207 -9.87905 -9.80230 -9.17632 -4.87819 -0.24113 -0.09193 -0.07639 0.09777 1.33426 1.56992 1.74785 2.01507 2.09464 2.14056 2.19722 2.26529 2.61990 2.78444 3.27877 3.40249 3.45107 3.49026 3.59392 3.61457 3.72157 3.76181 3.78410 3.82468 3.92393 3.96540 4.08756 4.11828 4.14802 4.19672 4.25365 4.28101 4.28933 4.30601 4.55903 4.63094 4.65564 4.68225 4.74815 4.77127 4.77921 4.80920 4.82428 4.88640 4.96731 4.98328 5.01369 5.05376 5.08206 5.18814 5.31773 5.36283 5.65694 5.72722 6.04991 6.30401 6.55786 6.58967 7.27917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.303 6.303 3 C 0.217 3.783 4 C -0.312 4.312 5 C 0.214 3.786 6 O -0.313 6.313 7 C 0.012 3.988 8 C -0.197 4.197 9 C -0.074 4.074 10 O -0.547 6.547 11 Si 0.761 3.239 12 C 0.001 3.999 13 C -0.225 4.225 14 C 0.567 3.433 15 O -0.562 6.562 16 N -0.701 5.701 17 C 0.116 3.884 18 H 0.089 0.911 19 C -0.124 4.124 20 C -0.070 4.070 21 H 0.123 0.877 22 C -0.008 4.008 23 C -0.155 4.155 24 C 0.117 3.883 25 F -0.140 7.140 26 C -0.206 4.206 27 C 0.118 3.882 28 F -0.141 7.141 29 C -0.158 4.158 30 C -0.145 4.145 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.161 0.839 35 H 0.066 0.934 36 H 0.118 0.882 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.384 0.616 40 H -0.303 1.303 41 H -0.247 1.247 42 H 0.165 0.835 43 H 0.411 0.589 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.162 0.838 47 H 0.150 0.850 48 H 0.158 0.842 49 H 0.099 0.901 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.047 3.080 -2.909 5.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.214 6.214 3 C 0.168 3.832 4 C -0.331 4.331 5 C 0.166 3.834 6 O -0.224 6.224 7 C -0.082 4.082 8 C -0.198 4.198 9 C -0.182 4.182 10 O -0.355 6.355 11 Si 0.663 3.337 12 C -0.017 4.017 13 C -0.230 4.230 14 C 0.356 3.644 15 O -0.442 6.442 16 N -0.354 5.354 17 C 0.011 3.989 18 H 0.107 0.893 19 C -0.162 4.162 20 C -0.088 4.088 21 H 0.141 0.859 22 C -0.008 4.008 23 C -0.174 4.174 24 C 0.098 3.902 25 F -0.119 7.119 26 C -0.225 4.225 27 C 0.099 3.901 28 F -0.119 7.119 29 C -0.177 4.177 30 C -0.183 4.183 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.179 0.821 35 H 0.084 0.916 36 H 0.136 0.864 37 H 0.090 0.910 38 H 0.129 0.871 39 H 0.233 0.767 40 H -0.231 1.231 41 H -0.172 1.172 42 H 0.182 0.818 43 H 0.249 0.751 44 H 0.118 0.882 45 H 0.124 0.876 46 H 0.180 0.820 47 H 0.168 0.832 48 H 0.175 0.825 49 H 0.117 0.883 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.777 2.835 -2.976 4.961 hybrid contribution -0.371 0.097 1.499 1.547 sum -3.148 2.933 -1.478 4.549 Atomic orbital electron populations 1.23463 0.76600 1.05724 1.02591 1.86365 1.23122 1.25916 1.86026 1.18998 0.91194 0.84638 0.88370 1.21414 1.01973 0.90825 1.18872 1.18954 0.91017 0.84838 0.88602 1.86143 1.21013 1.28780 1.86493 1.23456 0.76345 1.05793 1.02584 1.19500 0.90739 0.96602 1.13007 1.25136 1.12810 0.92407 0.87805 1.86620 1.80762 1.50810 1.17298 0.94341 0.70977 0.79678 0.88662 1.21011 1.00323 0.88816 0.91550 1.19123 0.90690 0.93836 1.19309 1.18012 0.82490 0.88285 0.75598 1.90827 1.72322 1.30274 1.50738 1.45441 1.04872 1.09833 1.75281 1.21871 0.91654 0.87976 0.97409 0.89281 1.23430 0.92606 1.04549 0.95592 1.21744 0.88471 1.01084 0.97469 0.85873 1.19460 0.95352 0.91480 0.94515 1.21366 0.90769 1.02681 1.02575 1.17458 0.85806 0.87056 0.99883 1.91532 1.59367 1.71577 1.89419 1.21176 1.01478 0.92513 1.07349 1.17427 0.94606 0.77059 1.01037 1.91531 1.95718 1.30631 1.94046 1.21268 0.96217 0.96610 1.03595 1.23631 0.95603 1.01435 0.97659 0.86924 0.91256 0.90938 0.82135 0.91571 0.86381 0.90972 0.87091 0.76731 1.23094 1.17186 0.81839 0.75130 0.88234 0.87617 0.82021 0.83207 0.82476 0.88275 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.30 -2.14 8.56 -68.82 -0.59 -2.73 16 3 C 0.22 1.00 6.70 22.82 0.15 1.15 16 4 C -0.31 -0.18 8.01 22.43 0.18 0.00 16 5 C 0.21 0.28 6.67 22.60 0.15 0.43 16 6 O -0.31 -0.46 9.80 -90.39 -0.89 -1.35 16 7 C 0.01 -0.07 9.80 113.37 1.11 1.04 16 8 C -0.20 0.16 5.27 -19.80 -0.10 0.06 16 9 C -0.07 0.11 2.37 71.23 0.17 0.28 16 10 O -0.55 -1.06 12.88 -148.98 -1.92 -2.98 16 11 Si 0.76 -4.63 30.25 68.60 2.08 -2.56 16 12 C 0.00 0.00 8.14 22.50 0.18 0.18 16 13 C -0.23 -0.66 5.89 -20.00 -0.12 -0.78 16 14 C 0.57 3.02 7.76 86.63 0.67 3.69 16 15 O -0.56 -8.00 14.75 16.86 0.25 -7.76 16 16 N -0.70 1.93 5.21 -443.12 -2.31 -0.38 16 17 C 0.12 -0.39 4.33 45.58 0.20 -0.20 16 18 H 0.09 0.13 7.46 -2.39 -0.02 0.11 16 19 C -0.12 1.06 7.29 31.12 0.23 1.28 16 20 C -0.07 0.56 3.85 -11.01 -0.04 0.52 16 21 H 0.12 -1.40 8.09 -2.39 -0.02 -1.42 16 22 C -0.01 0.03 5.29 -19.88 -0.11 -0.07 16 23 C -0.16 0.47 9.69 22.32 0.22 0.69 16 24 C 0.12 0.15 7.30 22.37 0.16 0.31 16 25 F -0.14 -0.57 17.27 44.97 0.78 0.21 16 26 C -0.21 -0.36 10.01 22.36 0.22 -0.13 16 27 C 0.12 0.20 7.30 22.37 0.16 0.36 16 28 F -0.14 -0.66 17.27 44.97 0.78 0.12 16 29 C -0.16 0.37 8.51 22.32 0.19 0.56 16 30 C -0.14 0.68 7.27 31.18 0.23 0.91 16 31 H 0.11 -0.43 8.14 -2.38 -0.02 -0.45 16 32 H 0.07 -0.34 7.66 -2.39 -0.02 -0.36 16 33 H 0.07 -0.39 7.66 -2.39 -0.02 -0.41 16 34 H 0.16 -0.65 4.50 -2.91 -0.01 -0.66 16 35 H 0.07 -0.47 7.65 -2.39 -0.02 -0.48 16 36 H 0.12 -0.96 8.14 -2.38 -0.02 -0.98 16 37 H 0.07 -0.58 7.65 -2.38 -0.02 -0.60 16 38 H 0.11 -0.05 7.82 -2.39 -0.02 -0.07 16 39 H 0.38 -1.79 8.70 -74.06 -0.64 -2.43 16 40 H -0.30 -0.79 7.11 99.48 0.71 -0.08 16 41 H -0.25 1.90 6.67 99.48 0.66 2.56 16 42 H 0.16 -1.49 3.17 -2.91 -0.01 -1.50 16 43 H 0.41 -3.72 6.72 -92.71 -0.62 -4.35 16 44 H 0.10 -1.11 8.14 -2.39 -0.02 -1.13 16 45 H 0.11 -0.92 7.64 -2.38 -0.02 -0.94 16 46 H 0.16 -1.19 8.05 -2.91 -0.02 -1.21 16 47 H 0.15 0.05 8.06 -2.91 -0.02 0.03 16 48 H 0.16 -0.83 6.72 -2.91 -0.02 -0.85 16 49 H 0.10 -0.49 6.39 -2.39 -0.02 -0.51 16 50 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 Total: 0.00 -24.93 417.49 2.92 -22.02 By element: Atomic # 1 Polarization: -15.74 SS G_CDS: -0.23 Total: -15.96 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 4.97 Total: 11.38 kcal Atomic # 7 Polarization: 1.93 SS G_CDS: -2.31 Total: -0.38 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -3.14 Total: -14.82 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 1.55 Total: 0.33 kcal Atomic # 14 Polarization: -4.63 SS G_CDS: 2.08 Total: -2.56 kcal Total: -24.93 2.92 -22.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_12297780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.952 kcal (2) G-P(sol) polarization free energy of solvation -24.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds