Wall clock time and date at job start Tue Mar 9 2021 13:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86307 * 109.47360 * 2 1 4 4 C 1.50699 * 109.47128 * 120.00245 * 2 1 3 5 5 C 1.34834 * 125.65536 * 64.99518 * 4 2 1 6 6 C 1.40790 * 107.05046 * 180.02562 * 5 4 2 7 7 C 1.36108 * 106.73783 * 0.02562 * 6 5 4 8 8 C 1.47558 * 125.94840 * 179.97438 * 7 6 5 9 9 C 1.39928 * 119.95595 * 0.02562 * 8 7 6 10 10 C 1.36422 * 120.27847 * 179.97438 * 9 8 7 11 11 C 1.39870 * 120.19086 * 0.02562 * 10 9 8 12 12 C 1.47297 * 120.05198 * 180.02562 * 11 10 9 13 13 O 1.21616 * 120.00354 * 179.97438 * 12 11 10 14 14 N 1.34772 * 119.99480 * 359.97438 * 12 11 10 15 15 C 1.46504 * 119.99880 * 180.02562 * 14 12 11 16 16 H 1.09006 * 112.84808 * 336.19276 * 15 14 12 17 17 C 1.53951 * 113.54042 * 107.50520 * 15 14 12 18 18 C 1.53783 * 87.02059 * 89.18876 * 17 15 14 19 19 H 1.08997 * 113.61405 * 270.77492 * 18 17 15 20 20 C 1.50694 * 113.61435 * 139.95299 * 18 17 15 21 21 C 1.38214 * 119.97581 * 140.86763 * 20 18 17 22 22 C 1.38469 * 120.02656 * 180.27536 * 21 20 18 23 23 F 1.35097 * 120.01368 * 179.71948 * 22 21 20 24 24 C 1.38428 * 119.97216 * 359.46885 * 22 21 20 25 25 C 1.38411 * 119.95074 * 0.50582 * 24 22 21 26 26 F 1.35102 * 120.01468 * 179.76621 * 25 24 22 27 27 C 1.38213 * 119.97847 * 320.84001 * 20 18 17 28 28 C 1.53780 * 87.17112 * 25.36239 * 18 17 15 29 29 C 1.40412 * 119.90533 * 0.27050 * 11 10 9 30 30 O 1.35680 * 120.13688 * 179.70246 * 29 11 10 31 31 C 1.38280 * 119.71988 * 359.43216 * 29 11 10 32 32 O 1.34232 * 125.65148 * 245.33089 * 4 2 1 33 33 H 0.96706 * 113.99933 * 59.99341 * 1 2 3 34 34 H 1.09004 * 109.47257 * 239.99999 * 2 1 3 35 35 H 1.48494 * 109.99767 * 298.68378 * 3 2 1 36 36 H 1.48500 * 109.99736 * 60.00098 * 3 2 1 37 37 H 1.08007 * 126.47253 * 0.03192 * 5 4 2 38 38 H 1.07998 * 126.63004 * 179.97438 * 6 5 4 39 39 H 1.07999 * 119.85838 * 359.97438 * 9 8 7 40 40 H 1.08008 * 119.90408 * 180.02562 * 10 9 8 41 41 H 0.97000 * 120.00668 * 0.02562 * 14 12 11 42 42 H 1.09002 * 113.66480 * 334.66218 * 17 15 14 43 43 H 1.09001 * 113.61360 * 203.70986 * 17 15 14 44 44 H 1.08002 * 119.98320 * 359.97438 * 21 20 18 45 45 H 1.08002 * 120.02147 * 180.24889 * 24 22 21 46 46 H 1.07999 * 119.98150 * 0.02562 * 27 20 18 47 47 H 1.08997 * 113.61444 * 89.15768 * 28 18 17 48 48 H 1.09007 * 113.61514 * 220.06042 * 28 18 17 49 49 H 0.96699 * 113.99731 * 90.00445 * 30 29 11 50 50 H 1.08005 * 120.08504 * 180.29414 * 31 29 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7567 -2.0180 1.5093 6 6 2.3800 -2.2628 2.7478 7 6 2.9065 -1.0782 3.1625 8 6 3.6544 -0.8536 4.4145 9 6 3.8753 -1.9170 5.2968 10 6 4.5663 -1.7170 6.4559 11 6 5.0588 -0.4463 6.7708 12 6 5.8050 -0.2338 8.0229 13 8 6.2332 0.8713 8.2956 14 7 6.0132 -1.2642 8.8662 15 6 6.7549 -1.0529 10.1119 16 1 7.4205 -0.1908 10.0671 17 6 5.8673 -1.0861 11.3692 18 6 6.1240 -2.6018 11.4125 19 1 5.4002 -3.1837 10.8419 20 6 6.3392 -3.1381 12.8043 21 6 5.8067 -4.3621 13.1627 22 6 5.9990 -4.8533 14.4430 23 9 5.4735 -6.0471 14.7948 24 6 6.7342 -4.1229 15.3607 25 6 7.2675 -2.8975 15.0006 26 9 7.9813 -2.1814 15.8967 27 6 7.0695 -2.4059 13.7213 28 6 7.4305 -2.3253 10.6500 29 6 4.8363 0.6278 5.8942 30 8 5.3067 1.8637 6.1979 31 6 4.1407 0.4194 4.7174 32 8 2.6213 -0.1450 2.2334 33 1 -0.3933 0.4418 -0.7650 34 1 1.7924 -0.5138 -0.8900 35 1 1.5879 2.4585 -1.2242 36 1 1.5616 2.4679 1.2085 37 1 1.2370 -2.7411 0.8981 38 1 2.4298 -3.2076 3.2685 39 1 3.4970 -2.9003 5.0591 40 1 4.7337 -2.5422 7.1323 41 1 5.6721 -2.1458 8.6486 42 1 4.8266 -0.8249 11.1772 43 1 6.2906 -0.5472 12.2169 44 1 5.2362 -4.9334 12.4453 45 1 6.8881 -4.5071 16.3583 46 1 7.4852 -1.4496 13.4401 47 1 8.2819 -2.1258 11.3006 48 1 7.6500 -3.0630 9.8781 49 1 6.1988 2.0370 5.8676 50 1 3.9704 1.2403 4.0365 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705374_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:09 Heat of formation + Delta-G solvation = -86.832606 kcal Electronic energy + Delta-G solvation = -38871.253812 eV Core-core repulsion = 33241.440719 eV Total energy + Delta-G solvation = -5629.813094 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 428.131 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -50.07510 -50.05051 -43.73239 -41.83196 -40.98803 -39.68721 -38.49179 -38.11661 -37.84389 -34.80650 -34.20020 -33.32848 -31.92373 -31.36995 -31.24745 -30.46268 -27.30065 -26.68430 -26.34592 -24.52868 -24.03321 -23.91724 -23.05968 -22.42179 -22.00399 -21.31617 -20.43376 -19.60092 -19.06139 -18.82421 -18.61380 -18.11246 -18.03282 -17.42572 -17.29974 -17.10211 -17.04477 -16.77514 -16.63485 -16.44135 -16.37093 -16.11493 -16.05451 -15.88157 -15.62945 -15.39885 -15.30121 -15.04195 -14.56453 -14.39829 -14.18370 -14.10768 -14.04051 -13.96828 -13.70049 -13.55876 -13.50031 -13.43704 -13.06583 -12.92109 -12.86364 -12.76709 -12.68443 -12.16589 -12.06656 -11.88788 -11.67867 -11.28362 -11.12291 -10.92521 -10.76471 -10.55899 -10.10016 -9.93874 -9.88902 -9.80485 -8.99827 -5.00825 -0.78036 -0.09700 -0.07763 0.16377 0.63421 1.11507 1.35447 1.45336 1.69884 1.90160 1.93358 2.03311 2.26187 2.66325 2.78346 3.02120 3.25729 3.27431 3.39512 3.53626 3.57899 3.62953 3.65367 3.72318 3.78503 3.81888 3.91910 3.94596 4.00331 4.02361 4.08383 4.13605 4.22021 4.32416 4.42736 4.60406 4.65411 4.71086 4.74081 4.76363 4.79290 4.80716 4.80750 4.87644 4.91931 4.98164 4.99184 5.05863 5.07908 5.11642 5.16443 5.23777 5.34318 5.44656 5.55388 5.61917 5.72486 5.99186 6.49007 6.50091 6.72054 7.19809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.038 4.038 3 Si 0.756 3.244 4 C -0.017 4.017 5 C -0.181 4.181 6 C -0.170 4.170 7 C 0.003 3.997 8 C 0.025 3.975 9 C -0.109 4.109 10 C -0.049 4.049 11 C -0.178 4.178 12 C 0.559 3.441 13 O -0.562 6.562 14 N -0.694 5.694 15 C 0.115 3.885 16 H 0.087 0.913 17 C -0.146 4.146 18 C -0.066 4.066 19 H 0.129 0.871 20 C -0.009 4.009 21 C -0.153 4.153 22 C 0.117 3.883 23 F -0.140 7.140 24 C -0.206 4.206 25 C 0.117 3.883 26 F -0.141 7.141 27 C -0.160 4.160 28 C -0.123 4.123 29 C 0.160 3.840 30 O -0.496 6.496 31 C -0.156 4.156 32 O -0.180 6.180 33 H 0.405 0.595 34 H 0.132 0.868 35 H -0.260 1.260 36 H -0.316 1.316 37 H 0.169 0.831 38 H 0.186 0.814 39 H 0.171 0.829 40 H 0.177 0.823 41 H 0.416 0.584 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.165 0.835 45 H 0.150 0.850 46 H 0.156 0.844 47 H 0.103 0.897 48 H 0.098 0.902 49 H 0.409 0.591 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 -7.084 -6.531 9.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.147 4.147 3 Si 0.660 3.340 4 C -0.067 4.067 5 C -0.200 4.200 6 C -0.189 4.189 7 C -0.046 4.046 8 C 0.024 3.976 9 C -0.127 4.127 10 C -0.067 4.067 11 C -0.182 4.182 12 C 0.348 3.652 13 O -0.442 6.442 14 N -0.347 5.347 15 C 0.010 3.990 16 H 0.105 0.895 17 C -0.185 4.185 18 C -0.084 4.084 19 H 0.147 0.853 20 C -0.009 4.009 21 C -0.172 4.172 22 C 0.098 3.902 23 F -0.118 7.118 24 C -0.226 4.226 25 C 0.097 3.903 26 F -0.120 7.120 27 C -0.179 4.179 28 C -0.160 4.160 29 C 0.114 3.886 30 O -0.309 6.309 31 C -0.174 4.174 32 O -0.078 6.078 33 H 0.258 0.742 34 H 0.149 0.851 35 H -0.186 1.186 36 H -0.244 1.244 37 H 0.187 0.813 38 H 0.203 0.797 39 H 0.188 0.812 40 H 0.194 0.806 41 H 0.255 0.745 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.183 0.817 45 H 0.167 0.833 46 H 0.174 0.826 47 H 0.121 0.879 48 H 0.116 0.884 49 H 0.269 0.731 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.332 -5.411 -5.466 7.806 hybrid contribution -0.954 -0.148 -0.083 0.969 sum 0.379 -5.560 -5.549 7.864 Atomic orbital electron populations 1.86520 1.17437 1.80780 1.51891 1.23950 0.84571 1.11925 0.94240 0.93819 0.90648 0.72487 0.77013 1.21853 1.00272 0.93234 0.91321 1.21844 1.03767 0.95828 0.98576 1.22258 1.00636 0.99007 0.96991 1.20634 1.04894 0.87909 0.91206 1.17967 0.95304 0.94051 0.90232 1.21071 0.99296 0.99331 0.92985 1.21193 0.93723 0.95150 0.96631 1.20512 1.05515 0.95269 0.96892 1.18187 0.79163 0.84327 0.83541 1.90828 1.51680 1.25307 1.76343 1.45423 1.56674 1.12261 1.20349 1.21887 0.94205 0.99948 0.83006 0.89473 1.23630 1.01145 0.95419 0.98258 1.21736 0.99707 0.96066 0.90883 0.85347 1.19475 0.93486 0.92179 0.95765 1.21379 1.03261 0.97572 0.94973 1.17467 0.96499 0.82087 0.94158 1.91531 1.84430 1.43286 1.92602 1.21182 1.03140 0.95801 1.02439 1.17439 0.94559 0.90357 0.87899 1.91530 1.75814 1.77303 1.67352 1.21276 1.02389 1.02825 0.91368 1.23404 0.96556 0.96275 0.99803 1.18494 0.94665 0.84222 0.91235 1.84734 1.37557 1.28499 1.80154 1.21562 1.01271 0.97635 0.96979 1.83916 1.58514 1.38598 1.26808 0.74208 0.85070 1.18552 1.24378 0.81334 0.79664 0.81150 0.80620 0.74502 0.91095 0.88515 0.81729 0.83252 0.82641 0.87881 0.88354 0.73086 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.26 12.86 -148.98 -1.92 -2.18 16 2 C -0.04 0.06 2.97 71.24 0.21 0.27 16 3 Si 0.76 -0.46 32.11 68.60 2.20 1.74 16 4 C -0.02 -0.05 6.24 24.90 0.16 0.10 16 5 C -0.18 -0.15 10.78 22.11 0.24 0.09 16 6 C -0.17 0.17 10.25 22.40 0.23 0.40 16 7 C 0.00 0.01 7.02 24.23 0.17 0.18 16 8 C 0.03 0.02 5.87 -20.08 -0.12 -0.10 16 9 C -0.11 0.64 9.48 22.26 0.21 0.85 16 10 C -0.05 0.34 9.47 22.24 0.21 0.55 16 11 C -0.18 -0.13 5.89 -19.97 -0.12 -0.25 16 12 C 0.56 1.75 7.75 86.63 0.67 2.42 16 13 O -0.56 -6.87 14.74 16.91 0.25 -6.62 16 14 N -0.69 3.56 5.21 -443.14 -2.31 1.26 16 15 C 0.12 -0.54 4.33 45.58 0.20 -0.34 16 16 H 0.09 0.04 7.46 -2.38 -0.02 0.02 16 17 C -0.15 0.80 7.27 31.18 0.23 1.03 16 18 C -0.07 0.62 3.85 -11.02 -0.04 0.58 16 19 H 0.13 -1.75 8.08 -2.39 -0.02 -1.76 16 20 C -0.01 0.05 5.29 -19.88 -0.11 -0.06 16 21 C -0.15 0.62 9.69 22.32 0.22 0.84 16 22 C 0.12 0.07 7.30 22.37 0.16 0.23 16 23 F -0.14 -0.47 17.27 44.97 0.78 0.31 16 24 C -0.21 -0.29 10.01 22.36 0.22 -0.06 16 25 C 0.12 0.17 7.30 22.37 0.16 0.34 16 26 F -0.14 -0.66 17.27 44.97 0.78 0.12 16 27 C -0.16 0.42 8.51 22.32 0.19 0.61 16 28 C -0.12 1.18 7.29 31.12 0.23 1.41 16 29 C 0.16 0.76 6.71 22.81 0.15 0.91 16 30 O -0.50 -3.67 11.56 -68.99 -0.80 -4.47 16 31 C -0.16 -0.57 9.65 22.61 0.22 -0.35 16 32 O -0.18 -1.00 8.79 -6.05 -0.05 -1.05 16 33 H 0.41 -3.50 8.74 -74.05 -0.65 -4.14 16 34 H 0.13 -1.09 7.96 -2.39 -0.02 -1.11 16 35 H -0.26 -0.18 7.11 99.48 0.71 0.53 16 36 H -0.32 -3.24 7.11 99.48 0.71 -2.53 16 37 H 0.17 -0.46 8.06 -2.91 -0.02 -0.49 16 38 H 0.19 -1.49 7.24 -2.91 -0.02 -1.51 16 39 H 0.17 -2.11 6.95 -2.91 -0.02 -2.13 16 40 H 0.18 -2.76 6.38 -2.91 -0.02 -2.78 16 41 H 0.42 -5.18 6.71 -92.71 -0.62 -5.80 16 42 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.10 -0.50 6.39 -2.39 -0.02 -0.52 16 44 H 0.17 -1.45 8.05 -2.91 -0.02 -1.48 16 45 H 0.15 0.02 8.06 -2.91 -0.02 -0.01 16 46 H 0.16 -0.84 6.72 -2.91 -0.02 -0.86 16 47 H 0.10 -0.95 7.64 -2.39 -0.02 -0.97 16 48 H 0.10 -1.20 8.14 -2.38 -0.02 -1.22 16 49 H 0.41 -0.02 9.06 -74.06 -0.67 -0.69 16 50 H 0.13 0.59 7.90 -2.91 -0.02 0.56 16 Total: 0.00 -30.20 434.63 1.80 -28.40 By element: Atomic # 1 Polarization: -26.32 SS G_CDS: -0.83 Total: -27.15 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 3.69 Total: 9.64 kcal Atomic # 7 Polarization: 3.56 SS G_CDS: -2.31 Total: 1.26 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -2.52 Total: -14.32 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 1.55 Total: 0.43 kcal Atomic # 14 Polarization: -0.46 SS G_CDS: 2.20 Total: 1.74 kcal Total: -30.20 1.80 -28.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.431 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds