Wall clock time and date at job start Tue Mar 9 2021 13:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86300 * 109.46537 * 2 1 4 4 C 1.50701 * 109.47247 * 119.99860 * 2 1 3 5 5 C 1.38576 * 120.32254 * 65.00003 * 4 2 1 6 6 C 1.38633 * 118.48666 * 180.02562 * 5 4 2 7 7 C 1.39268 * 119.06039 * 0.02562 * 6 5 4 8 8 C 1.48172 * 119.72043 * 179.97438 * 7 6 5 9 9 O 1.21511 * 119.99943 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99757 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00096 * 180.02562 * 10 8 7 12 12 H 1.09004 * 112.84509 * 336.19324 * 11 10 8 13 13 C 1.53779 * 113.69204 * 107.45899 * 11 10 8 14 14 C 1.53789 * 87.07856 * 89.12909 * 13 11 10 15 15 H 1.08989 * 113.68722 * 270.86772 * 14 13 11 16 16 C 1.50701 * 113.61095 * 139.97888 * 14 13 11 17 17 C 1.38208 * 119.97603 * 322.47918 * 16 14 13 18 18 C 1.38476 * 120.02410 * 179.97438 * 17 16 14 19 19 F 1.35101 * 120.01215 * 180.29629 * 18 17 16 20 20 C 1.38425 * 119.97328 * 0.02562 * 18 17 16 21 21 C 1.38412 * 119.95050 * 359.97438 * 20 18 17 22 22 F 1.35097 * 120.01227 * 180.02562 * 21 20 18 23 23 C 1.38206 * 119.97054 * 142.49967 * 16 14 13 24 24 C 1.53775 * 113.61420 * 204.99781 * 11 10 8 25 25 N 1.32743 * 120.55449 * 0.27094 * 7 6 5 26 26 C 1.31491 * 121.64514 * 359.42967 * 25 7 6 27 27 H 0.96698 * 114.00641 * 299.99741 * 1 2 3 28 28 H 1.08991 * 109.47163 * 240.00500 * 2 1 3 29 29 H 1.48504 * 109.99740 * 178.68116 * 3 2 1 30 30 H 1.48502 * 110.00310 * 299.99857 * 3 2 1 31 31 H 1.07996 * 120.75846 * 0.02562 * 5 4 2 32 32 H 1.07997 * 120.47015 * 179.97438 * 6 5 4 33 33 H 0.97005 * 119.99925 * 359.97438 * 10 8 7 34 34 H 1.08990 * 113.61578 * 334.57908 * 13 11 10 35 35 H 1.09000 * 113.61286 * 203.67262 * 13 11 10 36 36 H 1.08001 * 119.98837 * 0.02562 * 17 16 14 37 37 H 1.08000 * 120.02498 * 179.97438 * 20 18 17 38 38 H 1.07994 * 119.99231 * 0.02562 * 23 16 14 39 39 H 1.09004 * 113.61560 * 156.24710 * 24 11 10 40 40 H 1.09003 * 113.69152 * 25.35850 * 24 11 10 41 41 H 1.07999 * 119.55304 * 180.26940 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6880 -2.0633 1.4056 6 6 2.1671 -2.6784 2.5520 7 6 2.8720 -1.9192 3.4828 8 6 3.3902 -2.5616 4.7133 9 8 3.1991 -3.7458 4.9072 10 7 4.0727 -1.8321 5.6181 11 6 4.5855 -2.4672 6.8346 12 1 4.0354 -3.3683 7.1057 13 6 6.1121 -2.6530 6.8382 14 6 6.2020 -1.2527 7.4677 15 1 6.2641 -0.4470 6.7363 16 6 7.2457 -1.1431 8.5492 17 6 7.4545 -2.1984 9.4169 18 6 8.4136 -2.0989 10.4108 19 9 8.6216 -3.1329 11.2551 20 6 9.1630 -0.9418 10.5353 21 6 8.9530 0.1144 9.6658 22 9 9.6841 1.2442 9.7858 23 6 7.9930 0.0129 8.6729 24 6 4.7806 -1.4890 8.0049 25 7 3.0785 -0.6238 3.2795 26 6 2.6402 -0.0166 2.1987 27 1 -0.3934 0.4416 0.7650 28 1 1.7923 -0.5137 -0.8900 29 1 3.5345 1.7704 0.0321 30 1 1.5613 2.4680 -1.2085 31 1 1.1376 -2.6258 0.6660 32 1 1.9955 -3.7311 2.7212 33 1 4.2249 -0.8866 5.4634 34 1 6.5471 -2.7120 5.8406 35 1 6.4532 -3.4509 7.4977 36 1 6.8699 -3.1013 9.3193 37 1 9.9110 -0.8631 11.3104 38 1 7.8286 0.8372 7.9948 39 1 4.7578 -1.9687 8.9834 40 1 4.1412 -0.6079 7.9505 41 1 2.8311 1.0381 2.0657 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705374_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:40 Heat of formation + Delta-G solvation = -58.500221 kcal Electronic energy + Delta-G solvation = -28463.794166 eV Core-core repulsion = 23947.364170 eV Total energy + Delta-G solvation = -4516.429996 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.112 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.07683 -50.05467 -42.01218 -41.28542 -40.07284 -38.64288 -37.84030 -34.82356 -33.64199 -32.96857 -31.88907 -31.33143 -28.03589 -26.71328 -26.42229 -25.02443 -24.18403 -23.81908 -22.92431 -22.04098 -20.41476 -19.39174 -18.86061 -18.55358 -18.12089 -17.69715 -17.42536 -17.04843 -16.93915 -16.72130 -16.61227 -16.41357 -16.37314 -16.28555 -15.90308 -15.64276 -15.38569 -15.34454 -14.82382 -14.52701 -14.33613 -14.24201 -14.00704 -13.70347 -13.55956 -13.48068 -13.08574 -12.92645 -12.78300 -12.53800 -12.18827 -12.09620 -11.71331 -11.49418 -11.30763 -11.05466 -10.69229 -10.55816 -10.35000 -10.08278 -9.90135 -9.81068 -4.99707 -0.60102 -0.10225 -0.08466 0.07911 1.25936 1.52280 1.65465 1.91138 1.99585 2.25477 2.66147 2.77525 2.93879 3.26028 3.38368 3.44115 3.52945 3.55855 3.63396 3.69439 3.77319 3.79706 3.90279 3.92148 3.95051 4.07450 4.12621 4.13306 4.41569 4.57485 4.58949 4.72297 4.73192 4.77460 4.78403 4.82577 4.91112 4.97405 4.98021 5.00031 5.03703 5.13014 5.31648 5.38227 5.56301 5.71706 6.27267 6.61146 6.72792 7.04700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.070 4.070 3 Si 0.775 3.225 4 C -0.143 4.143 5 C -0.055 4.055 6 C -0.117 4.117 7 C 0.064 3.936 8 C 0.572 3.428 9 O -0.565 6.565 10 N -0.681 5.681 11 C 0.110 3.890 12 H 0.094 0.906 13 C -0.142 4.142 14 C -0.068 4.068 15 H 0.122 0.878 16 C -0.008 4.008 17 C -0.159 4.159 18 C 0.118 3.882 19 F -0.140 7.140 20 C -0.205 4.205 21 C 0.118 3.882 22 F -0.140 7.140 23 C -0.155 4.155 24 C -0.123 4.123 25 N -0.457 5.457 26 C 0.104 3.896 27 H 0.398 0.602 28 H 0.118 0.882 29 H -0.278 1.278 30 H -0.298 1.298 31 H 0.158 0.842 32 H 0.148 0.852 33 H 0.421 0.579 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.159 0.841 37 H 0.151 0.849 38 H 0.162 0.838 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.680 4.660 -1.209 5.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.180 4.180 3 Si 0.680 3.320 4 C -0.146 4.146 5 C -0.080 4.080 6 C -0.138 4.138 7 C -0.073 4.073 8 C 0.358 3.642 9 O -0.444 6.444 10 N -0.332 5.332 11 C 0.005 3.995 12 H 0.112 0.888 13 C -0.181 4.181 14 C -0.086 4.086 15 H 0.140 0.860 16 C -0.009 4.009 17 C -0.177 4.177 18 C 0.099 3.901 19 F -0.119 7.119 20 C -0.225 4.225 21 C 0.098 3.902 22 F -0.118 7.118 23 C -0.174 4.174 24 C -0.161 4.161 25 N -0.168 5.168 26 C -0.056 4.056 27 H 0.248 0.752 28 H 0.135 0.865 29 H -0.205 1.205 30 H -0.226 1.226 31 H 0.176 0.824 32 H 0.166 0.834 33 H 0.260 0.740 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.176 0.824 37 H 0.169 0.831 38 H 0.179 0.821 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -1.736 4.548 -1.292 5.036 hybrid contribution 0.188 -0.869 -0.612 1.080 sum -1.548 3.679 -1.904 4.422 Atomic orbital electron populations 1.86515 1.16685 1.82128 1.50595 1.25172 0.85609 1.11015 0.96249 0.93817 0.78115 0.74440 0.85580 1.21768 0.98813 0.95579 0.98392 1.21729 0.95610 0.94240 0.96441 1.22281 0.95676 1.02298 0.93503 1.21058 0.99608 0.90882 0.95746 1.18063 0.77774 0.85598 0.82802 1.90797 1.59600 1.16387 1.77575 1.45442 1.53975 1.14000 1.19774 1.21965 0.95056 0.97727 0.84745 0.88796 1.23593 0.95387 0.97025 1.02071 1.21709 0.92407 0.99267 0.95199 0.86035 1.19439 0.95108 0.91338 0.94996 1.21275 0.99313 1.01883 0.95246 1.17421 0.97455 0.84539 0.90688 1.91532 1.94143 1.56683 1.69527 1.21182 1.04499 0.93261 1.03526 1.17452 0.92995 0.82650 0.97068 1.91530 1.75873 1.48952 1.95492 1.21365 0.96224 1.00590 0.99188 1.23402 0.94777 0.99965 0.97908 1.67498 1.18397 1.08880 1.22000 1.23022 0.93556 1.00799 0.88211 0.75206 0.86492 1.20503 1.22590 0.82394 0.83440 0.74041 0.91081 0.87843 0.82379 0.83143 0.82065 0.87395 0.88867 0.79399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.58 12.84 -148.98 -1.91 0.67 16 2 C -0.07 0.41 2.82 71.24 0.20 0.61 16 3 Si 0.78 -5.57 29.83 68.60 2.05 -3.53 16 4 C -0.14 0.64 5.37 -19.69 -0.11 0.53 16 5 C -0.05 0.13 9.83 22.45 0.22 0.35 16 6 C -0.12 -0.12 9.63 22.61 0.22 0.10 16 7 C 0.06 0.14 6.75 41.90 0.28 0.42 16 8 C 0.57 2.56 7.81 86.88 0.68 3.24 16 9 O -0.57 -6.41 15.92 -3.75 -0.06 -6.47 16 10 N -0.68 1.14 5.26 -442.60 -2.33 -1.18 16 11 C 0.11 -0.36 4.32 45.51 0.20 -0.17 16 12 H 0.09 0.04 7.46 -2.38 -0.02 0.02 16 13 C -0.14 0.69 7.26 31.12 0.23 0.91 16 14 C -0.07 0.50 3.86 -11.01 -0.04 0.46 16 15 H 0.12 -1.21 8.09 -2.39 -0.02 -1.23 16 16 C -0.01 0.04 5.29 -19.88 -0.11 -0.07 16 17 C -0.16 0.38 8.59 22.32 0.19 0.57 16 18 C 0.12 0.18 7.30 22.37 0.16 0.35 16 19 F -0.14 -0.63 17.27 44.97 0.78 0.15 16 20 C -0.21 -0.35 10.01 22.36 0.22 -0.12 16 21 C 0.12 0.16 7.30 22.37 0.16 0.32 16 22 F -0.14 -0.57 17.27 44.97 0.78 0.21 16 23 C -0.16 0.43 9.69 22.32 0.22 0.64 16 24 C -0.12 0.95 7.29 31.12 0.23 1.18 16 25 N -0.46 0.44 9.54 -184.91 -1.76 -1.33 16 26 C 0.10 -0.48 9.84 84.83 0.83 0.35 16 27 H 0.40 -5.03 8.70 -74.06 -0.64 -5.67 16 28 H 0.12 -0.60 7.96 -2.39 -0.02 -0.62 16 29 H -0.28 0.75 7.11 99.48 0.71 1.46 16 30 H -0.30 -0.36 7.11 99.48 0.71 0.34 16 31 H 0.16 -0.80 8.06 -2.91 -0.02 -0.82 16 32 H 0.15 0.21 7.64 -2.91 -0.02 0.19 16 33 H 0.42 -2.26 8.03 -92.70 -0.74 -3.00 16 34 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.10 -0.59 6.31 -2.39 -0.02 -0.61 16 36 H 0.16 -0.89 6.66 -2.91 -0.02 -0.91 16 37 H 0.15 0.03 8.06 -2.91 -0.02 0.01 16 38 H 0.16 -1.10 8.05 -2.91 -0.02 -1.12 16 39 H 0.11 -0.91 7.72 -2.39 -0.02 -0.93 16 40 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 41 H 0.19 -1.98 4.92 -2.91 -0.01 -2.00 16 Total: 0.00 -18.86 359.02 1.10 -17.77 By element: Atomic # 1 Polarization: -15.73 SS G_CDS: -0.23 Total: -15.96 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 3.79 Total: 9.68 kcal Atomic # 7 Polarization: 1.58 SS G_CDS: -4.09 Total: -2.51 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -1.97 Total: -5.80 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 1.55 Total: 0.36 kcal Atomic # 14 Polarization: -5.57 SS G_CDS: 2.05 Total: -3.53 kcal Total: -18.86 1.10 -17.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.732 kcal (2) G-P(sol) polarization free energy of solvation -18.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds