Wall clock time and date at job start Tue Mar 9 2021 13:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86294 * 109.47035 * 2 1 4 4 C 1.50700 * 109.47263 * 239.99614 * 2 1 3 5 5 C 1.33737 * 125.12441 * 300.00490 * 4 2 1 6 6 C 1.37793 * 115.08233 * 179.97438 * 5 4 2 7 7 C 1.34977 * 114.70213 * 359.97438 * 6 5 4 8 8 C 1.47566 * 125.27511 * 179.97438 * 7 6 5 9 9 C 1.39815 * 119.99630 * 179.97438 * 8 7 6 10 10 C 1.36570 * 119.99951 * 180.02562 * 9 8 7 11 11 C 1.39832 * 119.99526 * 0.25927 * 10 9 8 12 12 C 1.47563 * 119.99684 * 179.71737 * 11 10 9 13 13 O 1.21593 * 119.99945 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99789 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00059 * 180.02562 * 14 12 11 16 16 H 1.08997 * 112.84715 * 336.19529 * 15 14 12 17 17 C 1.53782 * 113.61180 * 107.49816 * 15 14 12 18 18 C 1.53786 * 87.07991 * 89.12028 * 17 15 14 19 19 H 1.08993 * 113.60885 * 270.88013 * 18 17 15 20 20 C 1.50698 * 113.61411 * 139.97872 * 18 17 15 21 21 C 1.38205 * 119.97718 * 322.22200 * 20 18 17 22 22 C 1.38478 * 120.02734 * 179.76588 * 21 20 18 23 23 F 1.35097 * 120.01518 * 180.25234 * 22 21 20 24 24 C 1.38416 * 119.96905 * 0.49151 * 22 21 20 25 25 C 1.38417 * 119.95241 * 359.76666 * 24 22 21 26 26 F 1.35099 * 120.01265 * 180.02562 * 25 24 22 27 27 C 1.38210 * 119.97066 * 142.50078 * 20 18 17 28 28 C 1.53774 * 113.61446 * 204.99845 * 15 14 12 29 29 C 1.39830 * 119.99746 * 359.40005 * 11 10 9 30 30 C 1.36557 * 120.00252 * 0.64362 * 29 11 10 31 31 S 1.75866 * 125.11550 * 120.30313 * 4 2 1 32 32 H 0.96698 * 114.00424 * 299.99779 * 1 2 3 33 33 H 1.09002 * 109.46908 * 119.99745 * 2 1 3 34 34 H 1.48506 * 110.00215 * 178.68088 * 3 2 1 35 35 H 1.48500 * 110.00211 * 299.99821 * 3 2 1 36 36 H 1.08003 * 122.45716 * 0.02562 * 5 4 2 37 37 H 1.08004 * 122.64717 * 179.97438 * 6 5 4 38 38 H 1.07999 * 120.00105 * 0.02562 * 9 8 7 39 39 H 1.08002 * 119.99809 * 179.97438 * 10 9 8 40 40 H 0.97000 * 119.99894 * 359.97438 * 14 12 11 41 41 H 1.09006 * 113.61131 * 203.66201 * 17 15 14 42 42 H 1.08998 * 113.61815 * 334.56557 * 17 15 14 43 43 H 1.08006 * 119.98660 * 0.02562 * 21 20 18 44 44 H 1.08006 * 120.02086 * 179.78537 * 24 22 21 45 45 H 1.08002 * 119.98889 * 359.97438 * 27 20 18 46 46 H 1.08998 * 113.61501 * 25.42955 * 28 15 14 47 47 H 1.09007 * 113.61444 * 156.25173 * 28 15 14 48 48 H 1.08005 * 120.00006 * 180.32234 * 29 11 10 49 49 H 1.07991 * 120.00680 * 179.68154 * 30 29 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6721 -1.9847 -1.5429 6 6 2.2372 -2.4240 -2.7203 7 6 2.9660 -1.4967 -3.3767 8 6 3.6712 -1.7148 -4.6544 9 6 4.3962 -0.6723 -5.2395 10 6 5.0484 -0.8740 -6.4224 11 6 4.9866 -2.1215 -7.0509 12 6 5.6862 -2.3376 -8.3320 13 8 6.3160 -1.4307 -8.8414 14 7 5.6262 -3.5399 -8.9381 15 6 6.3212 -3.7547 -10.2098 16 1 6.4892 -2.8300 -10.7617 17 6 7.5748 -4.6366 -10.0853 18 6 6.6530 -5.8442 -10.3241 19 1 6.2267 -6.2556 -9.4092 20 6 7.2577 -6.8983 -11.2153 21 6 8.0350 -6.5262 -12.2957 22 6 8.5952 -7.4941 -13.1124 23 9 9.3592 -7.1302 -14.1655 24 6 8.3678 -8.8344 -12.8523 25 6 7.5847 -9.2058 -11.7730 26 9 7.3625 -10.5137 -11.5177 27 6 7.0297 -8.2363 -10.9548 28 6 5.7109 -4.8791 -11.0630 29 6 4.2674 -3.1661 -6.4620 30 6 3.6145 -2.9642 -5.2798 31 16 2.9529 0.0092 -2.4679 32 1 -0.3934 0.4416 0.7650 33 1 1.7923 -0.5138 0.8900 34 1 3.5346 1.7703 0.0321 35 1 1.5614 2.4679 -1.2085 36 1 1.0638 -2.6224 -0.9186 37 1 2.1074 -3.4309 -3.0888 38 1 4.4404 0.2925 -4.7561 39 1 5.6081 -0.0685 -6.8745 40 1 5.1234 -4.2633 -8.5320 41 1 8.3014 -4.4776 -10.8822 42 1 8.0239 -4.6196 -9.0922 43 1 8.2092 -5.4801 -12.5006 44 1 8.8015 -9.5899 -13.4908 45 1 6.4186 -8.5259 -10.1126 46 1 4.6552 -5.0579 -10.8592 47 1 5.9267 -4.7856 -12.1275 48 1 4.2239 -4.1313 -6.9449 49 1 3.0547 -3.7694 -4.8275 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705374_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:02 Heat of formation + Delta-G solvation = -32.732440 kcal Electronic energy + Delta-G solvation = -35576.839720 eV Core-core repulsion = 30392.125457 eV Total energy + Delta-G solvation = -5184.714263 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 428.104 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -50.08940 -50.06367 -41.82557 -40.89378 -39.89534 -39.04879 -38.52663 -37.40600 -34.88133 -33.54262 -32.41181 -31.85444 -31.34818 -30.54521 -27.51988 -26.72127 -26.43011 -24.77254 -24.08876 -23.91040 -23.47397 -22.91041 -21.88999 -20.46032 -20.18502 -19.20523 -18.87887 -18.56837 -18.29695 -18.12611 -17.43868 -17.22274 -17.09872 -17.05852 -16.75474 -16.38424 -16.25762 -16.23389 -16.07116 -15.81430 -15.61538 -15.45140 -15.33837 -15.08505 -14.90602 -14.67187 -14.43878 -14.32330 -14.15209 -14.07151 -13.71604 -13.53656 -13.41801 -13.26028 -13.15609 -13.08161 -12.93534 -12.79035 -12.69001 -12.37671 -12.17491 -12.09968 -11.83935 -11.71632 -11.32326 -11.17928 -10.87227 -10.36349 -10.25545 -10.16885 -9.91332 -9.82120 -9.72627 -9.10514 -5.26791 -0.97124 -0.11299 -0.09386 0.16225 0.27309 0.32086 0.67931 1.16607 1.46042 1.55173 1.87427 1.89521 1.97459 2.24505 2.76271 2.76796 3.25149 3.31540 3.37259 3.40358 3.54640 3.61381 3.65379 3.68591 3.76567 3.77175 3.82521 3.89808 3.91270 4.06061 4.10609 4.13955 4.24664 4.34208 4.43393 4.48670 4.54506 4.58719 4.71551 4.74007 4.76538 4.77648 4.83990 4.85466 4.93164 4.96404 4.96703 5.02837 5.03271 5.10945 5.15596 5.20968 5.25374 5.30895 5.41020 5.55949 5.66995 5.70842 6.42190 6.83848 7.09693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.035 4.035 3 Si 0.747 3.253 4 C -0.187 4.187 5 C -0.103 4.103 6 C -0.113 4.113 7 C -0.152 4.152 8 C 0.003 3.997 9 C -0.134 4.134 10 C -0.064 4.064 11 C -0.148 4.148 12 C 0.561 3.439 13 O -0.579 6.579 14 N -0.691 5.691 15 C 0.112 3.888 16 H 0.087 0.913 17 C -0.144 4.144 18 C -0.065 4.065 19 H 0.129 0.871 20 C -0.009 4.009 21 C -0.160 4.160 22 C 0.117 3.883 23 F -0.141 7.141 24 C -0.206 4.206 25 C 0.118 3.882 26 F -0.140 7.140 27 C -0.153 4.153 28 C -0.124 4.124 29 C -0.063 4.063 30 C -0.105 4.105 31 S 0.055 5.945 32 H 0.407 0.593 33 H 0.112 0.888 34 H -0.274 1.274 35 H -0.286 1.286 36 H 0.166 0.834 37 H 0.178 0.822 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.417 0.583 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.156 0.844 44 H 0.150 0.850 45 H 0.165 0.835 46 H 0.096 0.904 47 H 0.103 0.897 48 H 0.171 0.829 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.177 -3.305 7.021 9.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.148 4.148 3 Si 0.652 3.348 4 C -0.304 4.304 5 C -0.133 4.133 6 C -0.143 4.143 7 C -0.269 4.269 8 C 0.001 3.999 9 C -0.152 4.152 10 C -0.083 4.083 11 C -0.151 4.151 12 C 0.350 3.650 13 O -0.460 6.460 14 N -0.343 5.343 15 C 0.006 3.994 16 H 0.105 0.895 17 C -0.183 4.183 18 C -0.084 4.084 19 H 0.147 0.853 20 C -0.009 4.009 21 C -0.179 4.179 22 C 0.098 3.902 23 F -0.120 7.120 24 C -0.225 4.225 25 C 0.098 3.902 26 F -0.118 7.118 27 C -0.172 4.172 28 C -0.162 4.162 29 C -0.082 4.082 30 C -0.125 4.125 31 S 0.321 5.679 32 H 0.259 0.741 33 H 0.129 0.871 34 H -0.200 1.200 35 H -0.213 1.213 36 H 0.183 0.817 37 H 0.195 0.805 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.256 0.744 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.174 0.826 44 H 0.168 0.832 45 H 0.183 0.817 46 H 0.115 0.885 47 H 0.122 0.878 48 H 0.188 0.812 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.512 -0.971 5.477 6.578 hybrid contribution -0.185 -1.846 -0.275 1.876 sum -3.697 -2.817 5.202 6.976 Atomic orbital electron populations 1.86450 1.16546 1.82327 1.51641 1.24009 0.86146 1.09404 0.95248 0.94133 0.78739 0.76430 0.85535 1.24091 1.06603 0.98341 1.01323 1.20296 1.00598 0.94653 0.97754 1.20741 0.97333 1.01450 0.94752 1.23192 1.06951 0.97105 0.99616 1.18483 0.95197 0.94946 0.91234 1.20970 0.98818 0.99053 0.96398 1.20920 0.96551 0.96887 0.93944 1.20022 1.03098 0.95992 0.96010 1.18401 0.79593 0.82529 0.84505 1.90794 1.44435 1.43964 1.66808 1.45422 1.52880 1.12916 1.23120 1.21895 0.93704 0.98939 0.84829 0.89516 1.23598 0.96782 0.94332 1.03546 1.21730 0.96917 0.91368 0.98339 0.85333 1.19453 0.94193 0.93423 0.93848 1.21279 1.00129 1.00553 0.95917 1.17437 0.93713 0.92638 0.86441 1.91529 1.73266 1.92314 1.54869 1.21184 1.04144 0.96395 1.00790 1.17461 0.98497 0.78343 0.95876 1.91533 1.93088 1.33577 1.93633 1.21375 1.02642 0.91605 1.01557 1.23409 1.00489 0.92292 0.99967 1.21313 0.93450 0.98780 0.94612 1.21227 0.99849 0.96013 0.95377 1.84481 1.50572 1.15958 1.16913 0.74137 0.87091 1.19974 1.21288 0.81691 0.80487 0.85965 0.85448 0.74368 0.88335 0.90824 0.82632 0.83211 0.81747 0.88534 0.87822 0.81200 0.81712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.17 12.83 -148.98 -1.91 -0.75 16 2 C -0.04 0.06 2.95 71.24 0.21 0.27 16 3 Si 0.75 -1.07 30.96 68.60 2.12 1.05 16 4 C -0.19 -0.65 5.76 24.66 0.14 -0.51 16 5 C -0.10 -0.10 10.00 21.14 0.21 0.11 16 6 C -0.11 0.03 9.64 21.41 0.21 0.24 16 7 C -0.15 -0.51 6.37 23.98 0.15 -0.36 16 8 C 0.00 0.01 5.88 -20.05 -0.12 -0.11 16 9 C -0.13 -0.62 9.54 22.26 0.21 -0.40 16 10 C -0.06 -0.34 9.53 22.27 0.21 -0.13 16 11 C -0.15 -0.27 5.88 -20.05 -0.12 -0.38 16 12 C 0.56 2.26 7.76 86.70 0.67 2.94 16 13 O -0.58 -7.76 15.93 -4.01 -0.06 -7.83 16 14 N -0.69 2.95 5.21 -443.18 -2.31 0.64 16 15 C 0.11 -0.45 4.32 45.52 0.20 -0.26 16 16 H 0.09 0.11 7.46 -2.39 -0.02 0.09 16 17 C -0.14 0.81 7.25 31.12 0.23 1.03 16 18 C -0.07 0.60 3.85 -11.01 -0.04 0.56 16 19 H 0.13 -1.71 8.09 -2.39 -0.02 -1.73 16 20 C -0.01 0.05 5.29 -19.88 -0.11 -0.06 16 21 C -0.16 0.41 8.58 22.32 0.19 0.60 16 22 C 0.12 0.18 7.30 22.37 0.16 0.34 16 23 F -0.14 -0.66 17.27 44.97 0.78 0.12 16 24 C -0.21 -0.29 10.01 22.35 0.22 -0.07 16 25 C 0.12 0.08 7.30 22.37 0.16 0.24 16 26 F -0.14 -0.47 17.27 44.97 0.78 0.30 16 27 C -0.15 0.61 9.69 22.32 0.22 0.82 16 28 C -0.12 1.10 7.29 31.12 0.23 1.33 16 29 C -0.06 0.32 9.48 22.26 0.21 0.53 16 30 C -0.11 0.40 9.48 22.26 0.21 0.61 16 31 S 0.05 0.34 19.46 -56.49 -1.10 -0.76 16 32 H 0.41 -5.18 8.74 -74.06 -0.65 -5.83 16 33 H 0.11 -0.76 7.96 -2.39 -0.02 -0.78 16 34 H -0.27 -1.11 7.11 99.48 0.71 -0.41 16 35 H -0.29 -1.95 7.11 99.48 0.71 -1.24 16 36 H 0.17 -0.48 8.06 -2.91 -0.02 -0.50 16 37 H 0.18 -1.26 6.88 -2.91 -0.02 -1.28 16 38 H 0.12 0.57 7.26 -2.91 -0.02 0.55 16 39 H 0.13 0.90 7.64 -2.91 -0.02 0.88 16 40 H 0.42 -4.79 6.71 -92.71 -0.62 -5.41 16 41 H 0.10 -0.54 6.32 -2.38 -0.02 -0.56 16 42 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.16 -0.83 6.67 -2.91 -0.02 -0.85 16 44 H 0.15 0.01 8.06 -2.91 -0.02 -0.01 16 45 H 0.16 -1.43 8.05 -2.91 -0.02 -1.45 16 46 H 0.10 -1.08 8.14 -2.39 -0.02 -1.10 16 47 H 0.10 -0.89 7.72 -2.38 -0.02 -0.91 16 48 H 0.17 -2.34 6.38 -2.91 -0.02 -2.36 16 49 H 0.17 -1.66 6.74 -2.92 -0.02 -1.67 16 Total: 0.00 -26.51 431.33 1.78 -24.73 By element: Atomic # 1 Polarization: -24.69 SS G_CDS: -0.18 Total: -24.86 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 3.67 Total: 7.35 kcal Atomic # 7 Polarization: 2.95 SS G_CDS: -2.31 Total: 0.64 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -1.98 Total: -8.58 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 1.55 Total: 0.42 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: 2.12 Total: 1.05 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.10 Total: -0.76 kcal Total: -26.51 1.78 -24.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.004 kcal (2) G-P(sol) polarization free energy of solvation -26.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds