Wall clock time and date at job start Tue Mar 9 2021 13:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.32697 * 124.68456 * 299.72204 * 4 2 1 6 6 C 1.44504 * 113.09772 * 179.81840 * 5 4 2 7 7 C 1.47046 * 123.49447 * 180.21452 * 6 5 4 8 8 O 1.21650 * 120.00085 * 180.25283 * 7 6 5 9 9 N 1.34777 * 119.99635 * 0.25737 * 7 6 5 10 10 C 1.46503 * 119.99784 * 179.97438 * 9 7 6 11 11 H 1.08997 * 112.85080 * 336.19817 * 10 9 7 12 12 C 1.53781 * 113.61243 * 107.50192 * 10 9 7 13 13 C 1.53780 * 87.08201 * 89.11603 * 12 10 9 14 14 H 1.09004 * 113.61305 * 270.88185 * 13 12 10 15 15 C 1.50703 * 113.61324 * 139.98304 * 13 12 10 16 16 C 1.38208 * 119.97161 * 322.22728 * 15 13 12 17 17 C 1.38474 * 120.02023 * 179.73072 * 16 15 13 18 18 F 1.35097 * 120.01468 * 180.29215 * 17 16 15 19 19 C 1.38421 * 119.97718 * 0.54495 * 17 16 15 20 20 C 1.38421 * 119.94750 * 359.72841 * 19 17 16 21 21 F 1.35099 * 120.01289 * 179.97438 * 20 19 17 22 22 C 1.38208 * 119.97426 * 142.50247 * 15 13 12 23 23 C 1.53775 * 87.08128 * 25.43287 * 13 12 10 24 24 C 1.36229 * 113.01438 * 0.46694 * 6 5 4 25 25 Cl 1.73598 * 124.60540 * 179.78491 * 24 6 5 26 26 S 1.70439 * 110.78875 * 359.75224 * 24 6 5 27 27 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 28 28 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 29 29 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 30 30 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 31 31 H 1.08001 * 123.44778 * 359.96765 * 5 4 2 32 32 H 0.96994 * 120.00116 * 359.97438 * 9 7 6 33 33 H 1.09004 * 113.61485 * 203.66513 * 12 10 9 34 34 H 1.09001 * 113.61445 * 334.56656 * 12 10 9 35 35 H 1.07995 * 119.99394 * 359.97438 * 16 15 13 36 36 H 1.07993 * 120.02659 * 179.70727 * 19 17 16 37 37 H 1.08005 * 119.98973 * 0.02562 * 22 15 13 38 38 H 1.09001 * 113.61596 * 220.01865 * 23 13 12 39 39 H 1.08997 * 113.69198 * 89.12640 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6730 -1.9773 -1.5293 6 6 2.2771 -2.4012 -2.7716 7 6 2.1344 -3.7572 -3.3222 8 8 2.6750 -4.0472 -4.3727 9 7 1.4047 -4.6788 -2.6629 10 6 1.2620 -6.0296 -3.2116 11 1 1.4127 -6.0663 -4.2905 12 6 2.0582 -7.0952 -2.4400 13 6 0.8151 -7.2674 -1.5512 14 1 0.7991 -6.6008 -0.6890 15 6 0.5258 -8.7015 -1.1894 16 6 0.7300 -9.7030 -2.1196 17 6 0.4697 -11.0216 -1.7864 18 9 0.6750 -12.0011 -2.6939 19 6 -0.0058 -11.3353 -0.5248 20 6 -0.2153 -10.3307 0.4041 21 9 -0.6799 -10.6353 1.6356 22 6 0.0510 -9.0134 0.0706 23 6 -0.0108 -6.7540 -2.7424 24 6 2.9971 -1.4159 -3.3772 25 17 3.8507 -1.5988 -4.8777 26 16 2.9451 0.0210 -2.4621 27 1 -0.3934 0.4418 0.7650 28 1 1.7923 -0.5138 0.8901 29 1 3.5346 1.7702 0.0322 30 1 1.5616 2.4678 -1.2086 31 1 1.0708 -2.6244 -0.9087 32 1 0.9739 -4.4476 -1.8251 33 1 2.2960 -7.9778 -3.0339 34 1 2.9224 -6.6954 -1.9094 35 1 1.0964 -9.4577 -3.1054 36 1 -0.2135 -12.3629 -0.2657 37 1 -0.1128 -8.2294 0.7951 38 1 -0.8170 -6.0786 -2.4559 39 1 -0.3395 -7.5422 -3.4196 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705374_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:22 Heat of formation + Delta-G solvation = -63.837187 kcal Electronic energy + Delta-G solvation = -29294.269893 eV Core-core repulsion = 24572.386834 eV Total energy + Delta-G solvation = -4721.883059 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.034 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.08067 -50.05293 -41.71799 -40.57329 -39.06089 -38.46292 -38.00490 -37.01819 -34.58758 -32.09027 -31.71115 -31.32817 -27.29203 -26.74805 -26.70646 -25.46255 -23.92837 -22.93381 -22.18112 -20.87428 -20.39880 -19.39604 -18.88091 -18.37570 -18.14090 -17.87111 -17.41825 -17.16125 -17.04882 -16.74683 -16.43542 -16.37438 -16.29503 -15.84154 -15.65511 -15.38537 -15.35629 -14.79864 -14.72253 -14.49892 -14.30234 -14.25652 -13.99535 -13.70457 -13.48446 -13.08285 -12.99575 -12.92603 -12.77837 -12.59581 -12.46388 -12.25715 -12.08067 -12.01281 -11.70011 -11.31340 -11.03554 -10.44158 -10.20514 -9.92408 -9.90899 -9.81627 -9.76867 -5.22854 -0.72617 -0.26157 -0.10292 -0.08353 0.37141 0.65937 0.92937 1.19885 1.58836 1.90571 2.05882 2.09724 2.25684 2.77716 3.19328 3.26342 3.38402 3.56494 3.61242 3.67688 3.77382 3.79808 3.89817 3.91618 3.94382 4.07396 4.12499 4.30714 4.46654 4.60132 4.70536 4.73185 4.75268 4.77645 4.78834 4.86748 4.91584 4.97442 4.97980 5.04483 5.12992 5.32228 5.57763 5.71834 6.41389 6.89993 7.09869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.030 4.030 3 Si 0.743 3.257 4 C -0.190 4.190 5 C -0.061 4.061 6 C -0.162 4.162 7 C 0.575 3.425 8 O -0.557 6.557 9 N -0.689 5.689 10 C 0.114 3.886 11 H 0.088 0.912 12 C -0.143 4.143 13 C -0.065 4.065 14 H 0.128 0.872 15 C -0.009 4.009 16 C -0.160 4.160 17 C 0.117 3.883 18 F -0.141 7.141 19 C -0.206 4.206 20 C 0.118 3.882 21 F -0.139 7.139 22 C -0.153 4.153 23 C -0.124 4.124 24 C -0.133 4.133 25 Cl 0.005 6.995 26 S 0.194 5.806 27 H 0.409 0.591 28 H 0.124 0.876 29 H -0.267 1.267 30 H -0.280 1.280 31 H 0.193 0.807 32 H 0.416 0.584 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.165 0.835 38 H 0.095 0.905 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.513 4.776 9.036 10.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.144 4.144 3 Si 0.647 3.353 4 C -0.307 4.307 5 C -0.089 4.089 6 C -0.181 4.181 7 C 0.361 3.639 8 O -0.436 6.436 9 N -0.341 5.341 10 C 0.009 3.991 11 H 0.106 0.894 12 C -0.181 4.181 13 C -0.083 4.083 14 H 0.146 0.854 15 C -0.009 4.009 16 C -0.179 4.179 17 C 0.098 3.902 18 F -0.120 7.120 19 C -0.225 4.225 20 C 0.099 3.901 21 F -0.118 7.118 22 C -0.171 4.171 23 C -0.162 4.162 24 C -0.279 4.279 25 Cl 0.034 6.966 26 S 0.458 5.542 27 H 0.262 0.738 28 H 0.142 0.858 29 H -0.192 1.192 30 H -0.207 1.207 31 H 0.210 0.790 32 H 0.255 0.745 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.173 0.827 36 H 0.168 0.832 37 H 0.183 0.817 38 H 0.113 0.887 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.878 6.217 7.006 9.553 hybrid contribution -0.431 -2.289 -0.172 2.335 sum -2.309 3.928 6.835 8.214 Atomic orbital electron populations 1.86451 1.16074 1.82330 1.51860 1.23969 0.86533 1.09195 0.94676 0.93895 0.79201 0.76539 0.85643 1.23765 1.06900 0.98075 1.01972 1.21226 0.98689 0.95265 0.93722 1.20420 1.04511 0.94933 0.98281 1.17556 0.78699 0.83919 0.83716 1.90864 1.48154 1.80790 1.23794 1.45330 1.51736 1.10572 1.26434 1.21883 0.97868 0.80608 0.98743 0.89420 1.23588 0.97117 0.99223 0.98203 1.21720 0.96748 0.91033 0.98786 0.85402 1.19454 0.94396 0.95625 0.91429 1.21274 1.03867 0.90108 1.02622 1.17438 1.00392 0.85813 0.86601 1.91529 1.92619 1.61817 1.66034 1.21184 1.06446 1.01644 0.93249 1.17455 0.98668 0.93792 0.80227 1.91533 1.86121 1.94033 1.40111 1.21372 1.02331 0.94875 0.98569 1.23407 0.96082 1.00074 0.96622 1.25775 1.03938 1.01825 0.96393 1.98420 1.73925 1.97169 1.27116 1.83578 1.48017 1.09732 1.12883 0.73809 0.85842 1.19241 1.20655 0.79027 0.74539 0.88330 0.90837 0.82663 0.83206 0.81736 0.88694 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 4.61 12.83 -148.98 -1.91 2.70 16 2 C -0.03 0.24 2.94 71.24 0.21 0.45 16 3 Si 0.74 -5.00 30.91 68.60 2.12 -2.88 16 4 C -0.19 0.28 5.71 24.51 0.14 0.42 16 5 C -0.06 0.16 9.71 22.70 0.22 0.38 16 6 C -0.16 -0.63 5.98 -19.84 -0.12 -0.75 16 7 C 0.58 3.11 7.79 86.55 0.67 3.79 16 8 O -0.56 -7.53 14.51 -4.19 -0.06 -7.59 16 9 N -0.69 2.10 5.24 -443.65 -2.33 -0.23 16 10 C 0.11 -0.40 4.32 45.52 0.20 -0.20 16 11 H 0.09 0.15 7.46 -2.39 -0.02 0.13 16 12 C -0.14 0.75 7.25 31.12 0.23 0.97 16 13 C -0.06 0.56 3.85 -11.02 -0.04 0.52 16 14 H 0.13 -1.62 8.09 -2.39 -0.02 -1.64 16 15 C -0.01 0.04 5.29 -19.88 -0.11 -0.06 16 16 C -0.16 0.38 8.58 22.32 0.19 0.57 16 17 C 0.12 0.19 7.30 22.37 0.16 0.36 16 18 F -0.14 -0.68 17.27 44.97 0.78 0.09 16 19 C -0.21 -0.30 10.01 22.36 0.22 -0.08 16 20 C 0.12 0.08 7.30 22.37 0.16 0.24 16 21 F -0.14 -0.46 17.27 44.97 0.78 0.32 16 22 C -0.15 0.59 9.69 22.32 0.22 0.80 16 23 C -0.12 1.02 7.29 31.12 0.23 1.25 16 24 C -0.13 -0.93 6.87 67.35 0.46 -0.47 16 25 Cl 0.00 0.05 27.20 -2.72 -0.07 -0.02 16 26 S 0.19 0.65 20.17 -56.49 -1.14 -0.49 16 27 H 0.41 -7.54 8.74 -74.06 -0.65 -8.19 16 28 H 0.12 -1.73 7.96 -2.38 -0.02 -1.75 16 29 H -0.27 0.40 7.11 99.48 0.71 1.10 16 30 H -0.28 -0.37 7.11 99.48 0.71 0.34 16 31 H 0.19 -1.95 7.10 -2.91 -0.02 -1.97 16 32 H 0.42 -4.04 7.24 -92.71 -0.67 -4.71 16 33 H 0.10 -0.51 6.32 -2.39 -0.02 -0.53 16 34 H 0.07 -0.26 8.14 -2.39 -0.02 -0.27 16 35 H 0.16 -0.79 6.67 -2.91 -0.02 -0.80 16 36 H 0.15 0.02 8.06 -2.91 -0.02 0.00 16 37 H 0.17 -1.41 8.06 -2.91 -0.02 -1.43 16 38 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H 0.10 -0.83 7.72 -2.39 -0.02 -0.85 16 Total: 0.00 -22.57 369.19 1.09 -21.48 By element: Atomic # 1 Polarization: -21.45 SS G_CDS: -0.12 Total: -21.57 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 3.05 Total: 8.19 kcal Atomic # 7 Polarization: 2.10 SS G_CDS: -2.33 Total: -0.23 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: -1.97 Total: -4.89 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 1.55 Total: 0.41 kcal Atomic # 14 Polarization: -5.00 SS G_CDS: 2.12 Total: -2.88 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -1.14 Total: -0.49 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -0.07 Total: -0.02 kcal Total: -22.57 1.09 -21.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.357 kcal (2) G-P(sol) polarization free energy of solvation -22.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds