Wall clock time and date at job start Tue Mar 9 2021 13:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86300 * 109.47146 * 2 1 4 4 C 1.50698 * 109.47232 * 120.00405 * 2 1 3 5 5 C 1.34491 * 125.49080 * 209.97518 * 4 2 1 6 6 C 1.46751 * 106.36390 * 180.02562 * 5 4 2 7 7 C 1.47268 * 126.97007 * 179.97438 * 6 5 4 8 8 O 1.21629 * 120.00058 * 180.02562 * 7 6 5 9 9 N 1.34766 * 120.00078 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00324 * 180.02562 * 9 7 6 11 11 H 1.09004 * 112.84764 * 336.20128 * 10 9 7 12 12 C 1.53786 * 113.61441 * 107.50498 * 10 9 7 13 13 C 1.53779 * 87.07997 * 89.11741 * 12 10 9 14 14 H 1.08997 * 113.69165 * 270.86831 * 13 12 10 15 15 C 1.50706 * 113.60955 * 139.98049 * 13 12 10 16 16 C 1.38199 * 119.97576 * 322.22697 * 15 13 12 17 17 C 1.38481 * 120.02474 * 179.72437 * 16 15 13 18 18 F 1.35095 * 120.01448 * 180.25044 * 17 16 15 19 19 C 1.38417 * 119.96949 * 0.55319 * 17 16 15 20 20 C 1.38420 * 119.95411 * 359.71867 * 19 17 16 21 21 F 1.35097 * 120.01318 * 180.02562 * 20 19 17 22 22 C 1.38207 * 119.97093 * 142.49999 * 15 13 12 23 23 C 1.53781 * 87.08357 * 25.43165 * 13 12 10 24 24 C 1.36329 * 106.06088 * 0.21058 * 6 5 4 25 25 C 1.51010 * 126.79189 * 180.36944 * 24 6 5 26 26 C 1.53391 * 108.30072 * 163.95339 * 25 24 6 27 27 C 1.53148 * 109.04516 * 48.28440 * 26 25 24 28 28 C 1.53130 * 109.52919 * 290.42714 * 27 26 25 29 29 N 1.35210 * 108.66366 * 359.65853 * 24 6 5 30 30 H 0.96693 * 113.99747 * 299.99677 * 1 2 3 31 31 H 1.09005 * 109.46953 * 240.00148 * 2 1 3 32 32 H 1.48498 * 110.00017 * 178.68408 * 3 2 1 33 33 H 1.48500 * 110.00147 * 300.00350 * 3 2 1 34 34 H 1.07995 * 126.82276 * 0.03170 * 5 4 2 35 35 H 0.97006 * 120.00111 * 0.02562 * 9 7 6 36 36 H 1.08997 * 113.61318 * 334.56902 * 12 10 9 37 37 H 1.09001 * 113.61119 * 203.66602 * 12 10 9 38 38 H 1.07995 * 119.99087 * 359.97438 * 16 15 13 39 39 H 1.08002 * 120.02485 * 179.74641 * 19 17 16 40 40 H 1.08003 * 119.99155 * 0.02562 * 22 15 13 41 41 H 1.09001 * 113.61397 * 89.11508 * 23 13 12 42 42 H 1.08994 * 113.61764 * 220.01390 * 23 13 12 43 43 H 1.08994 * 109.84458 * 44.14774 * 25 24 6 44 44 H 1.09000 * 109.51638 * 283.55929 * 25 24 6 45 45 H 1.08997 * 109.54030 * 288.41198 * 26 25 24 46 46 H 1.09003 * 109.61435 * 168.20161 * 26 25 24 47 47 H 1.09000 * 109.46644 * 170.40766 * 27 26 25 48 48 H 1.09000 * 109.45317 * 50.43996 * 27 26 25 49 49 H 1.08999 * 109.56489 * 291.13805 * 28 27 26 50 50 H 1.09008 * 109.56105 * 170.80341 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 3.0860 -0.4467 1.8676 6 6 3.1558 -1.3783 2.9994 7 6 4.2345 -1.4810 3.9967 8 8 4.1621 -2.3054 4.8881 9 7 5.3018 -0.6616 3.9218 10 6 6.3752 -0.7642 4.9135 11 1 6.0427 -1.2062 5.8528 12 6 7.6675 -1.3879 4.3604 13 6 8.0937 0.0366 3.9680 14 1 7.7659 0.3331 2.9717 15 6 9.5541 0.3183 4.2114 16 6 10.1798 -0.1983 5.3301 17 6 11.5231 0.0551 5.5518 18 9 12.1358 -0.4541 6.6429 19 6 12.2361 0.8356 4.6583 20 6 11.6070 1.3571 3.5411 21 9 12.3019 2.1186 2.6680 22 6 10.2651 1.0976 3.3186 23 6 7.1738 0.5376 5.0938 24 6 2.0221 -2.1329 2.9372 25 6 1.6157 -3.2345 3.8868 26 6 0.1227 -3.5207 3.6818 27 6 -0.1562 -3.6708 2.1834 28 6 -0.0049 -2.3109 1.4958 29 7 1.2886 -1.7253 1.8770 30 1 -0.3932 0.4416 0.7650 31 1 1.7924 -0.5138 -0.8900 32 1 3.5346 1.7703 0.0320 33 1 1.5615 2.4679 -1.2084 34 1 3.8167 0.3021 1.5998 35 1 5.3594 -0.0039 3.2111 36 1 7.5042 -2.0456 3.5067 37 1 8.2986 -1.8368 5.1274 38 1 9.6221 -0.8031 6.0297 39 1 13.2828 1.0372 4.8325 40 1 9.7739 1.5048 2.4471 41 1 7.6699 0.6150 6.0612 42 1 6.6120 1.4343 4.8322 43 1 1.7918 -2.9200 4.9154 44 1 2.1949 -4.1325 3.6721 45 1 -0.4651 -2.6942 4.0811 46 1 -0.1473 -4.4424 4.1971 47 1 -1.1713 -4.0402 2.0381 48 1 0.5526 -4.3771 1.7512 49 1 -0.8121 -1.6502 1.8119 50 1 -0.0413 -2.4427 0.4143 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705374_16915396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:42 Heat of formation + Delta-G solvation = -58.664081 kcal Electronic energy + Delta-G solvation = -35555.633149 eV Core-core repulsion = 30572.583191 eV Total energy + Delta-G solvation = -4983.049958 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.159 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -50.08530 -50.06344 -42.78156 -41.45229 -39.99249 -38.52702 -37.90357 -36.83052 -34.44496 -33.45596 -31.95870 -31.35138 -31.14085 -29.42336 -26.87357 -26.67867 -26.27119 -24.61267 -24.26754 -23.82543 -22.82811 -21.70061 -21.23731 -20.38179 -19.52478 -19.04891 -18.74004 -18.11634 -17.43740 -17.29743 -17.05732 -17.02879 -16.81021 -16.65771 -16.54556 -16.38157 -15.99851 -15.70610 -15.55888 -15.43330 -15.32890 -15.22587 -15.07527 -14.91112 -14.68271 -14.46258 -14.33883 -13.99192 -13.88631 -13.68339 -13.45837 -13.22718 -13.06846 -12.91434 -12.75805 -12.64667 -12.31483 -12.10354 -12.04778 -11.98146 -11.80777 -11.73542 -11.66338 -11.27560 -10.88944 -10.67631 -10.06669 -9.90322 -9.81862 -9.55679 -9.03764 -4.90329 -0.10712 -0.09204 0.73300 1.08698 1.40877 1.68830 1.82680 2.05133 2.24902 2.39077 2.54387 2.76937 3.26444 3.36581 3.39147 3.49441 3.59009 3.59775 3.70181 3.71934 3.76812 3.81559 3.84214 3.91070 3.94985 4.07429 4.13351 4.16612 4.34218 4.36830 4.42670 4.45951 4.61819 4.63029 4.73146 4.74778 4.77239 4.78963 4.80426 4.81237 4.83158 4.90938 4.96762 4.97971 5.00381 5.04216 5.06146 5.15003 5.22196 5.23975 5.36725 5.67800 5.71288 5.73786 6.05344 6.23204 6.63405 6.67930 7.37535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.047 4.047 3 Si 0.796 3.204 4 C -0.010 4.010 5 C -0.170 4.170 6 C -0.254 4.254 7 C 0.592 3.408 8 O -0.586 6.586 9 N -0.699 5.699 10 C 0.117 3.883 11 H 0.088 0.912 12 C -0.144 4.144 13 C -0.067 4.067 14 H 0.121 0.879 15 C -0.008 4.008 16 C -0.159 4.159 17 C 0.119 3.881 18 F -0.140 7.140 19 C -0.205 4.205 20 C 0.118 3.882 21 F -0.140 7.140 22 C -0.156 4.156 23 C -0.123 4.123 24 C 0.106 3.894 25 C -0.054 4.054 26 C -0.123 4.123 27 C -0.136 4.136 28 C 0.105 3.895 29 N -0.425 5.425 30 H 0.394 0.606 31 H 0.110 0.890 32 H -0.270 1.270 33 H -0.297 1.297 34 H 0.165 0.835 35 H 0.412 0.588 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.161 0.839 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.108 0.892 48 H 0.063 0.937 49 H 0.104 0.896 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.931 2.834 -1.524 6.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.157 4.157 3 Si 0.699 3.301 4 C -0.119 4.119 5 C -0.194 4.194 6 C -0.264 4.264 7 C 0.382 3.618 8 O -0.468 6.468 9 N -0.350 5.350 10 C 0.012 3.988 11 H 0.106 0.894 12 C -0.183 4.183 13 C -0.085 4.085 14 H 0.139 0.861 15 C -0.009 4.009 16 C -0.177 4.177 17 C 0.099 3.901 18 F -0.119 7.119 19 C -0.225 4.225 20 C 0.098 3.902 21 F -0.118 7.118 22 C -0.174 4.174 23 C -0.161 4.161 24 C -0.013 4.013 25 C -0.092 4.092 26 C -0.160 4.160 27 C -0.174 4.174 28 C -0.014 4.014 29 N -0.100 5.100 30 H 0.244 0.756 31 H 0.128 0.872 32 H -0.196 1.196 33 H -0.224 1.224 34 H 0.182 0.818 35 H 0.249 0.751 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.175 0.825 39 H 0.169 0.831 40 H 0.179 0.821 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.126 0.874 48 H 0.082 0.918 49 H 0.122 0.878 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.706 2.436 -1.999 6.518 hybrid contribution 0.949 -0.510 -0.472 1.177 sum -4.757 1.926 -2.471 5.696 Atomic orbital electron populations 1.86462 1.17053 1.81816 1.50666 1.25002 0.85197 1.10946 0.94534 0.93156 0.78562 0.73837 0.84555 1.20949 0.95950 0.95474 0.99518 1.21929 0.98502 1.02822 0.96180 1.19927 0.98288 1.05874 1.02328 1.17548 0.81307 0.79741 0.83181 1.90745 1.80083 1.38422 1.37555 1.45322 1.19701 1.38347 1.31585 1.21808 0.86295 0.98277 0.92457 0.89381 1.23592 0.96793 0.95899 1.01970 1.21699 0.88494 0.97116 1.01221 0.86100 1.19457 0.96011 0.93513 0.91873 1.21268 0.92558 1.03564 1.00352 1.17416 0.91557 0.96488 0.84604 1.91530 1.83362 1.85184 1.51784 1.21177 1.02827 1.02721 0.95728 1.17446 0.90680 0.93580 0.88445 1.91529 1.79376 1.73247 1.67692 1.21356 0.91936 1.01535 1.02609 1.23401 0.96130 0.97184 0.99387 1.20548 0.91670 0.97993 0.91060 1.20438 0.96974 0.94484 0.97261 1.21688 0.94383 1.03608 0.96353 1.21940 1.04491 0.95577 0.95383 1.22293 0.82240 0.95485 1.01428 1.44036 1.17936 1.26826 1.21241 0.75601 0.87246 1.19595 1.22416 0.81763 0.75126 0.91357 0.88242 0.82501 0.83093 0.82116 0.87695 0.88805 0.89820 0.90636 0.90747 0.89472 0.87360 0.91850 0.87815 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.78 10.68 -148.98 -1.59 1.19 16 2 C -0.05 0.20 2.99 71.24 0.21 0.41 16 3 Si 0.80 -4.82 31.29 68.60 2.15 -2.68 16 4 C -0.01 0.01 6.15 40.99 0.25 0.26 16 5 C -0.17 0.09 9.09 23.64 0.21 0.31 16 6 C -0.25 -1.15 6.28 -19.12 -0.12 -1.27 16 7 C 0.59 3.94 7.81 86.62 0.68 4.61 16 8 O -0.59 -8.09 14.94 -4.12 -0.06 -8.15 16 9 N -0.70 0.38 5.26 -443.44 -2.33 -1.95 16 10 C 0.12 -0.20 4.32 45.52 0.20 0.00 16 11 H 0.09 0.24 7.46 -2.39 -0.02 0.22 16 12 C -0.14 0.46 7.25 31.12 0.23 0.68 16 13 C -0.07 0.43 3.86 -11.01 -0.04 0.39 16 14 H 0.12 -1.11 8.09 -2.39 -0.02 -1.13 16 15 C -0.01 0.03 5.29 -19.88 -0.11 -0.08 16 16 C -0.16 0.22 8.57 22.32 0.19 0.41 16 17 C 0.12 0.28 7.30 22.37 0.16 0.44 16 18 F -0.14 -0.72 17.27 44.97 0.78 0.06 16 19 C -0.20 -0.47 10.01 22.36 0.22 -0.25 16 20 C 0.12 0.23 7.30 22.37 0.16 0.40 16 21 F -0.14 -0.65 17.27 44.97 0.78 0.13 16 22 C -0.16 0.31 9.69 22.32 0.22 0.53 16 23 C -0.12 0.82 7.29 31.12 0.23 1.05 16 24 C 0.11 0.42 6.57 41.69 0.27 0.69 16 25 C -0.05 -0.16 5.32 30.08 0.16 0.00 16 26 C -0.12 0.38 5.98 30.77 0.18 0.57 16 27 C -0.14 0.69 5.92 30.69 0.18 0.87 16 28 C 0.11 -0.48 5.32 86.32 0.46 -0.02 16 29 N -0.42 0.04 3.11 -493.61 -1.54 -1.50 16 30 H 0.39 -4.69 8.63 -74.06 -0.64 -5.33 16 31 H 0.11 -0.31 7.96 -2.38 -0.02 -0.33 16 32 H -0.27 0.85 6.77 99.48 0.67 1.53 16 33 H -0.30 -0.41 7.11 99.48 0.71 0.30 16 34 H 0.17 -0.86 6.30 -2.91 -0.02 -0.88 16 35 H 0.41 -2.36 7.83 -92.70 -0.73 -3.08 16 36 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.10 -0.38 6.32 -2.39 -0.02 -0.39 16 38 H 0.16 -0.68 6.67 -2.91 -0.02 -0.70 16 39 H 0.15 0.11 8.06 -2.91 -0.02 0.09 16 40 H 0.16 -0.98 8.05 -2.91 -0.02 -1.00 16 41 H 0.10 -0.74 7.71 -2.39 -0.02 -0.76 16 42 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H 0.08 0.51 7.40 -2.39 -0.02 0.49 16 44 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.07 -0.28 8.12 -2.39 -0.02 -0.30 16 46 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 47 H 0.11 -0.94 8.14 -2.39 -0.02 -0.96 16 48 H 0.06 -0.16 8.11 -2.39 -0.02 -0.18 16 49 H 0.10 -0.83 7.94 -2.39 -0.02 -0.85 16 50 H 0.09 -0.37 7.69 -2.38 -0.02 -0.39 16 Total: 0.00 -19.33 409.06 1.78 -17.54 By element: Atomic # 1 Polarization: -14.28 SS G_CDS: -0.35 Total: -14.63 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 3.95 Total: 9.99 kcal Atomic # 7 Polarization: 0.41 SS G_CDS: -3.87 Total: -3.45 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -1.65 Total: -6.96 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 1.55 Total: 0.19 kcal Atomic # 14 Polarization: -4.82 SS G_CDS: 2.15 Total: -2.68 kcal Total: -19.33 1.78 -17.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_16915396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.120 kcal (2) G-P(sol) polarization free energy of solvation -19.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds