Wall clock time and date at job start Tue Mar 9 2021 13:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47509 * 2 1 4 4 C 1.50702 * 109.47007 * 239.99614 * 2 1 3 5 5 C 1.38273 * 119.94059 * 119.73091 * 4 2 1 6 6 C 1.38148 * 120.05257 * 179.72295 * 5 4 2 7 7 C 1.38728 * 119.94478 * 0.57359 * 6 5 4 8 8 O 1.35894 * 120.05711 * 179.68257 * 7 6 5 9 9 C 1.42904 * 116.99852 * 0.02562 * 8 7 6 10 10 C 1.50702 * 109.47002 * 180.02562 * 9 8 7 11 11 C 1.36408 * 125.80077 * 90.00495 * 10 9 8 12 12 C 1.47377 * 127.19228 * 359.97438 * 11 10 9 13 13 O 1.21612 * 120.00390 * 0.02562 * 12 11 10 14 14 N 1.34786 * 120.00033 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00149 * 179.97438 * 14 12 11 16 16 H 1.09001 * 112.84508 * 23.80552 * 15 14 12 17 17 C 1.53777 * 113.61485 * 154.99980 * 15 14 12 18 18 C 1.53779 * 87.08123 * 89.11518 * 17 15 14 19 19 H 1.09000 * 113.61482 * 270.79901 * 18 17 15 20 20 C 1.50697 * 113.61008 * 139.97748 * 18 17 15 21 21 C 1.38201 * 119.98105 * 299.72989 * 20 18 17 22 22 C 1.38476 * 120.02957 * 179.72949 * 21 20 18 23 23 F 1.35102 * 120.01612 * 180.25190 * 22 21 20 24 24 C 1.38420 * 119.97118 * 0.54215 * 22 21 20 25 25 C 1.38424 * 119.95007 * 359.73309 * 24 22 21 26 26 F 1.35097 * 120.01250 * 180.02562 * 25 24 22 27 27 C 1.38217 * 119.96927 * 120.00434 * 20 18 17 28 28 C 1.53773 * 113.61516 * 252.49754 * 15 14 12 29 29 C 1.47029 * 105.61732 * 179.97438 * 11 10 9 30 30 C 1.34175 * 105.95188 * 0.02562 * 29 11 10 31 31 O 1.33653 * 125.79872 * 269.69096 * 10 9 8 32 32 C 1.38729 * 119.88797 * 359.69691 * 7 6 5 33 33 C 1.38143 * 119.94821 * 0.02562 * 32 7 6 34 34 H 0.96700 * 113.99509 * 59.99951 * 1 2 3 35 35 H 1.09004 * 109.46926 * 120.00048 * 2 1 3 36 36 H 1.48498 * 109.99634 * 298.68172 * 3 2 1 37 37 H 1.48502 * 109.99691 * 59.99915 * 3 2 1 38 38 H 1.07998 * 119.96907 * 359.97438 * 5 4 2 39 39 H 1.07995 * 120.02276 * 180.24633 * 6 5 4 40 40 H 1.08993 * 109.47571 * 300.00351 * 9 8 7 41 41 H 1.09006 * 109.46443 * 60.00777 * 9 8 7 42 42 H 0.96997 * 119.99505 * 0.02562 * 14 12 11 43 43 H 1.08999 * 113.61584 * 203.67042 * 17 15 14 44 44 H 1.09001 * 113.61187 * 334.56391 * 17 15 14 45 45 H 1.08000 * 119.98439 * 359.97438 * 21 20 18 46 46 H 1.08000 * 120.02623 * 179.74536 * 24 22 21 47 47 H 1.07995 * 119.98819 * 0.02562 * 27 20 18 48 48 H 1.09005 * 113.61868 * 25.43341 * 28 15 14 49 49 H 1.09000 * 113.61569 * 156.33390 * 28 15 14 50 50 H 1.07994 * 127.02397 * 179.97438 * 29 11 10 51 51 H 1.07997 * 125.44267 * 180.02562 * 30 29 11 52 52 H 1.08004 * 120.03160 * 179.97438 * 32 7 6 53 53 H 1.07997 * 119.97777 * 180.02562 * 33 32 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7216 -0.0358 -2.1427 6 6 3.1881 -0.6865 -3.2685 7 6 2.8532 -2.0145 -3.4894 8 8 3.3055 -2.6549 -4.5994 9 6 4.1222 -1.8998 -5.4966 10 6 4.5257 -2.7682 -6.6602 11 6 3.8362 -2.9073 -7.8289 12 6 2.5698 -2.2508 -8.1997 13 8 2.0292 -1.4888 -7.4213 14 7 2.0108 -2.4950 -9.4016 15 6 0.7518 -1.8429 -9.7700 16 1 0.5793 -0.9161 -9.2229 17 6 0.5487 -1.7088 -11.2884 18 6 -0.1199 -3.0929 -11.2419 19 1 0.5783 -3.9197 -11.3717 20 6 -1.3334 -3.2070 -12.1281 21 6 -2.4198 -2.3781 -11.9216 22 6 -3.5332 -2.4783 -12.7389 23 9 -4.5931 -1.6644 -12.5399 24 6 -3.5622 -3.4167 -13.7559 25 6 -2.4758 -4.2503 -13.9583 26 9 -2.5026 -5.1664 -14.9509 27 6 -1.3613 -4.1445 -13.1434 28 6 -0.4569 -2.7936 -9.7717 29 6 4.6202 -3.8491 -8.6414 30 6 5.6860 -4.1801 -7.8966 31 8 5.6231 -3.5283 -6.7249 32 6 2.0555 -2.6875 -2.5755 33 6 1.5963 -2.0342 -1.4483 34 1 -0.3932 0.4417 -0.7651 35 1 1.7923 -0.5139 0.8900 36 1 1.5880 2.4585 -1.2242 37 1 1.5616 2.4678 1.2085 38 1 2.9777 0.9995 -1.9728 39 1 3.8085 -0.1602 -3.9787 40 1 3.5611 -1.0401 -5.8627 41 1 5.0142 -1.5554 -4.9732 42 1 2.4418 -3.1032 -10.0223 43 1 -0.1313 -0.9045 -11.5687 44 1 1.4805 -1.6928 -11.8538 45 1 -2.3989 -1.6492 -11.1249 46 1 -4.4318 -3.4984 -14.3913 47 1 -0.5137 -4.7950 -13.3008 48 1 -0.3371 -3.6534 -9.1125 49 1 -1.4120 -2.2858 -9.6372 50 1 4.3857 -4.2028 -9.6345 51 1 6.4719 -4.8583 -8.1944 52 1 1.7930 -3.7213 -2.7454 53 1 0.9757 -2.5578 -0.7363 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705374_4549634.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:17 Heat of formation + Delta-G solvation = -83.139881 kcal Electronic energy + Delta-G solvation = -41505.811849 eV Core-core repulsion = 35720.621265 eV Total energy + Delta-G solvation = -5785.190584 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 442.147 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -50.09806 -50.07373 -43.70356 -41.58305 -41.29794 -40.20382 -39.27033 -38.61925 -37.31274 -34.83834 -33.87549 -32.84564 -31.98265 -31.90817 -31.39821 -31.35020 -28.04099 -26.73372 -26.70511 -26.15228 -24.77071 -23.94259 -23.79742 -23.05431 -22.42782 -22.18466 -21.08185 -20.28650 -19.50919 -19.26789 -18.89135 -18.36824 -18.13709 -17.49165 -17.43752 -17.21224 -17.11286 -17.06681 -16.97210 -16.76979 -16.67850 -16.39357 -16.33387 -16.14909 -16.01228 -15.78175 -15.59124 -15.50712 -15.35640 -15.00366 -14.69321 -14.55476 -14.39404 -14.21013 -14.06057 -13.85724 -13.70167 -13.57829 -13.50947 -13.50636 -13.15645 -13.04903 -12.94699 -12.79324 -12.31742 -12.14132 -12.12848 -12.06286 -11.72383 -11.65034 -11.34138 -11.17301 -10.95285 -10.60568 -10.17065 -10.05579 -9.92734 -9.83692 -9.80483 -9.24845 -4.92617 -0.12414 -0.10580 -0.02939 0.26155 0.29134 1.05040 1.32489 1.52541 1.60620 1.95834 2.02888 2.11176 2.23460 2.47503 2.63503 2.75661 3.24119 3.35650 3.36196 3.42640 3.54478 3.58234 3.65314 3.69269 3.72215 3.75742 3.79242 3.88854 3.90340 3.90953 3.95068 4.04978 4.10159 4.12220 4.28945 4.41911 4.47425 4.53186 4.55439 4.63436 4.68506 4.70283 4.74044 4.75333 4.76566 4.82362 4.86299 4.95140 4.95342 4.95872 5.01812 5.11231 5.14003 5.24827 5.27732 5.31827 5.46591 5.56432 5.68272 5.69698 5.90411 6.25659 6.44524 6.48384 7.11346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.078 4.078 3 Si 0.766 3.234 4 C -0.158 4.158 5 C -0.076 4.076 6 C -0.205 4.205 7 C 0.125 3.875 8 O -0.322 6.322 9 C 0.134 3.866 10 C 0.040 3.960 11 C -0.224 4.224 12 C 0.587 3.413 13 O -0.571 6.571 14 N -0.689 5.689 15 C 0.115 3.885 16 H 0.089 0.911 17 C -0.122 4.122 18 C -0.066 4.066 19 H 0.126 0.874 20 C -0.009 4.009 21 C -0.160 4.160 22 C 0.118 3.882 23 F -0.141 7.141 24 C -0.205 4.205 25 C 0.118 3.882 26 F -0.140 7.140 27 C -0.154 4.154 28 C -0.145 4.145 29 C -0.195 4.195 30 C -0.013 4.013 31 O -0.178 6.178 32 C -0.163 4.163 33 C -0.058 4.058 34 H 0.385 0.615 35 H 0.126 0.874 36 H -0.285 1.285 37 H -0.302 1.302 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.417 0.583 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.156 0.844 46 H 0.151 0.849 47 H 0.164 0.836 48 H 0.069 0.931 49 H 0.098 0.902 50 H 0.194 0.806 51 H 0.251 0.749 52 H 0.133 0.867 53 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.828 -1.457 -4.107 8.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.186 4.186 3 Si 0.671 3.329 4 C -0.159 4.159 5 C -0.093 4.093 6 C -0.223 4.223 7 C 0.080 3.920 8 O -0.237 6.237 9 C 0.060 3.940 10 C -0.013 4.013 11 C -0.228 4.228 12 C 0.375 3.625 13 O -0.452 6.452 14 N -0.340 5.340 15 C 0.010 3.990 16 H 0.107 0.893 17 C -0.160 4.160 18 C -0.084 4.084 19 H 0.144 0.856 20 C -0.009 4.009 21 C -0.179 4.179 22 C 0.098 3.902 23 F -0.119 7.119 24 C -0.225 4.225 25 C 0.099 3.901 26 F -0.118 7.118 27 C -0.172 4.172 28 C -0.183 4.183 29 C -0.214 4.214 30 C -0.079 4.079 31 O -0.073 6.073 32 C -0.181 4.181 33 C -0.076 4.076 34 H 0.234 0.766 35 H 0.144 0.856 36 H -0.212 1.212 37 H -0.231 1.231 38 H 0.167 0.833 39 H 0.166 0.834 40 H 0.125 0.875 41 H 0.120 0.880 42 H 0.254 0.746 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.174 0.826 46 H 0.168 0.832 47 H 0.182 0.818 48 H 0.088 0.912 49 H 0.117 0.883 50 H 0.211 0.789 51 H 0.267 0.733 52 H 0.151 0.849 53 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.467 -0.633 -2.916 8.041 hybrid contribution -1.658 -0.480 -1.281 2.150 sum 5.809 -1.114 -4.197 7.253 Atomic orbital electron populations 1.86559 1.18728 1.80352 1.50132 1.25179 0.83258 1.11682 0.98528 0.94162 0.90330 0.72086 0.76279 1.20283 1.01963 0.95337 0.98298 1.21020 0.95624 1.00007 0.92678 1.21411 1.06064 0.93728 1.01132 1.19169 0.94608 0.91877 0.86331 1.86047 1.65282 1.40649 1.31679 1.21157 0.95452 0.91252 0.86169 1.22047 0.87046 0.96030 0.96132 1.21362 0.98519 1.05844 0.97114 1.17420 0.83107 0.80150 0.81804 1.90783 1.64433 1.38394 1.51548 1.45298 1.24116 1.47814 1.16813 1.21866 0.83340 0.96555 0.97261 0.89280 1.23399 1.02350 0.96553 0.93722 1.21715 0.93940 0.99860 0.92848 0.85603 1.19454 0.94792 0.92508 0.94181 1.21272 0.92354 1.02922 1.01312 1.17433 0.85214 0.90931 0.96602 1.91531 1.55090 1.70888 1.94440 1.21185 1.01146 0.98501 1.01640 1.17458 0.95425 0.89206 0.88059 1.91532 1.96815 1.64255 1.59213 1.21369 0.98440 1.01452 0.95976 1.23596 0.98920 1.00185 0.95647 1.23259 0.95287 1.00050 1.02779 1.24917 1.02173 0.98435 0.82345 1.83800 1.38589 1.46907 1.38029 1.20621 1.01201 1.01422 0.94893 1.20934 0.96967 0.93878 0.95786 0.76587 0.85627 1.21169 1.23062 0.83339 0.83398 0.87528 0.88017 0.74564 0.87745 0.88581 0.82623 0.83167 0.81849 0.91189 0.88321 0.78892 0.73301 0.84942 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.30 12.77 -148.98 -1.90 -4.21 16 2 C -0.08 -0.06 2.82 71.24 0.20 0.14 16 3 Si 0.77 -0.67 29.78 68.60 2.04 1.37 16 4 C -0.16 -0.37 5.39 -19.85 -0.11 -0.47 16 5 C -0.08 -0.09 8.66 22.26 0.19 0.11 16 6 C -0.20 -0.61 9.04 22.37 0.20 -0.40 16 7 C 0.13 0.84 6.69 22.50 0.15 1.00 16 8 O -0.32 -2.68 10.12 -92.36 -0.93 -3.61 16 9 C 0.13 0.50 4.74 71.24 0.34 0.83 16 10 C 0.04 0.15 7.00 25.26 0.18 0.33 16 11 C -0.22 -0.38 6.31 -18.99 -0.12 -0.50 16 12 C 0.59 2.23 7.81 86.65 0.68 2.91 16 13 O -0.57 -6.45 14.44 -4.07 -0.06 -6.51 16 14 N -0.69 2.62 5.26 -443.35 -2.33 0.29 16 15 C 0.12 -0.46 4.32 45.51 0.20 -0.27 16 16 H 0.09 0.06 7.46 -2.39 -0.02 0.04 16 17 C -0.12 1.08 7.29 31.12 0.23 1.30 16 18 C -0.07 0.56 3.86 -11.02 -0.04 0.52 16 19 H 0.13 -1.54 8.09 -2.39 -0.02 -1.56 16 20 C -0.01 0.04 5.29 -19.88 -0.11 -0.06 16 21 C -0.16 0.38 8.60 22.32 0.19 0.57 16 22 C 0.12 0.19 7.30 22.37 0.16 0.35 16 23 F -0.14 -0.66 17.27 44.97 0.78 0.11 16 24 C -0.21 -0.31 10.01 22.36 0.22 -0.09 16 25 C 0.12 0.10 7.30 22.37 0.16 0.27 16 26 F -0.14 -0.50 17.27 44.97 0.78 0.28 16 27 C -0.15 0.55 9.69 22.32 0.22 0.76 16 28 C -0.14 0.72 7.25 31.12 0.23 0.95 16 29 C -0.20 1.13 10.60 23.65 0.25 1.38 16 30 C -0.01 0.08 12.03 66.89 0.80 0.88 16 31 O -0.18 -0.21 10.52 4.36 0.05 -0.16 16 32 C -0.16 -0.99 9.99 22.36 0.22 -0.76 16 33 C -0.06 -0.23 9.60 22.25 0.21 -0.02 16 34 H 0.39 -0.33 8.70 -74.06 -0.64 -0.98 16 35 H 0.13 -0.13 7.96 -2.38 -0.02 -0.15 16 36 H -0.28 -0.91 7.10 99.48 0.71 -0.20 16 37 H -0.30 -2.03 7.11 99.48 0.71 -1.32 16 38 H 0.15 -0.52 4.87 -2.91 -0.01 -0.53 16 39 H 0.15 -0.18 6.30 -2.91 -0.02 -0.20 16 40 H 0.11 0.51 6.00 -2.39 -0.01 0.50 16 41 H 0.10 -0.12 7.66 -2.38 -0.02 -0.14 16 42 H 0.42 -4.22 7.87 -92.71 -0.73 -4.95 16 43 H 0.10 -0.91 7.73 -2.39 -0.02 -0.93 16 44 H 0.10 -1.06 8.14 -2.39 -0.02 -1.07 16 45 H 0.16 -0.80 6.64 -2.91 -0.02 -0.82 16 46 H 0.15 0.02 8.06 -2.91 -0.02 0.00 16 47 H 0.16 -1.33 8.05 -2.91 -0.02 -1.35 16 48 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 49 H 0.10 -0.50 6.29 -2.39 -0.02 -0.51 16 50 H 0.19 -2.60 7.74 -2.91 -0.02 -2.62 16 51 H 0.25 -3.71 8.06 -2.91 -0.02 -3.73 16 52 H 0.13 0.65 8.06 -2.91 -0.02 0.63 16 53 H 0.14 0.30 8.06 -2.91 -0.02 0.27 16 Total: 0.00 -25.31 453.13 2.77 -22.55 By element: Atomic # 1 Polarization: -19.51 SS G_CDS: -0.31 Total: -19.82 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 4.66 Total: 9.72 kcal Atomic # 7 Polarization: 2.62 SS G_CDS: -2.33 Total: 0.29 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -2.85 Total: -14.49 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 1.55 Total: 0.39 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: 2.04 Total: 1.37 kcal Total: -25.31 2.77 -22.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_4549634.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.594 kcal (2) G-P(sol) polarization free energy of solvation -25.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds