Wall clock time and date at job start Tue Mar 9 2021 13:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86294 * 109.47217 * 2 1 4 4 C 1.50703 * 109.47357 * 120.00276 * 2 1 3 5 5 C 1.34228 * 126.50193 * 255.27176 * 4 2 1 6 6 N 1.36828 * 109.94134 * 180.20049 * 5 4 2 7 7 C 1.46501 * 125.06802 * 179.81278 * 6 5 4 8 8 C 1.50695 * 109.47376 * 264.70306 * 7 6 5 9 9 O 1.21282 * 119.99917 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00305 * 179.97438 * 8 7 6 11 11 C 1.46506 * 120.00033 * 179.97438 * 10 8 7 12 12 H 1.08992 * 112.90684 * 336.24748 * 11 10 8 13 13 C 1.54049 * 113.61276 * 107.61836 * 11 10 8 14 14 C 1.53781 * 87.08031 * 89.07129 * 13 11 10 15 15 H 1.08999 * 113.61181 * 270.87794 * 14 13 11 16 16 C 1.50698 * 113.61565 * 139.97986 * 14 13 11 17 17 C 1.38216 * 119.96972 * 322.22186 * 16 14 13 18 18 C 1.38481 * 120.01860 * 179.77407 * 17 16 14 19 19 F 1.35096 * 120.00894 * 180.25389 * 18 17 16 20 20 C 1.38414 * 119.97726 * 0.48136 * 18 17 16 21 21 C 1.38427 * 119.94851 * 359.77589 * 20 18 17 22 22 F 1.35097 * 120.00892 * 180.02562 * 21 20 18 23 23 C 1.38200 * 119.97569 * 142.50437 * 16 14 13 24 24 C 1.53781 * 87.08070 * 25.42738 * 14 13 11 25 25 C 1.37695 * 109.87020 * 359.55259 * 6 5 4 26 26 C 1.39086 * 133.51236 * 180.28700 * 25 6 5 27 27 C 1.37784 * 119.77752 * 179.97438 * 26 25 6 28 28 C 1.38795 * 120.66798 * 0.02562 * 27 26 25 29 29 C 1.36651 * 120.52630 * 0.02562 * 28 27 26 30 30 C 1.39595 * 119.76494 * 359.95178 * 29 28 27 31 31 H 0.96702 * 113.99816 * 59.99447 * 1 2 3 32 32 H 1.09006 * 109.46863 * 240.00243 * 2 1 3 33 33 H 1.48504 * 110.00384 * 298.68077 * 3 2 1 34 34 H 1.48502 * 110.00303 * 60.00191 * 3 2 1 35 35 H 1.08004 * 125.02960 * 0.04056 * 5 4 2 36 36 H 1.08997 * 109.47520 * 144.69557 * 7 6 5 37 37 H 1.09001 * 109.46568 * 24.69677 * 7 6 5 38 38 H 0.97002 * 120.00078 * 359.97438 * 10 8 7 39 39 H 1.09005 * 113.62125 * 334.52173 * 13 11 10 40 40 H 1.09003 * 113.61268 * 203.61961 * 13 11 10 41 41 H 1.07994 * 119.98740 * 0.02562 * 17 16 14 42 42 H 1.07994 * 120.02915 * 179.79317 * 20 18 17 43 43 H 1.08000 * 119.99092 * 359.97119 * 23 16 14 44 44 H 1.09002 * 113.61445 * 89.11830 * 24 14 13 45 45 H 1.09002 * 113.61408 * 219.93560 * 24 14 13 46 46 H 1.07999 * 120.11146 * 359.97438 * 26 25 6 47 47 H 1.08008 * 119.66517 * 179.97438 * 27 26 25 48 48 H 1.08001 * 119.73511 * 179.97438 * 28 27 26 49 49 H 1.08001 * 120.12103 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.4562 -0.1375 2.3250 6 7 2.8041 -1.0992 3.2339 7 6 3.4098 -0.8408 4.5426 8 6 4.9079 -0.9632 4.4358 9 8 5.4194 -1.2397 3.3715 10 7 5.6794 -0.7656 5.5230 11 6 7.1359 -0.8852 5.4193 12 1 7.4518 -1.5122 4.5856 13 6 7.8727 0.4657 5.4919 14 6 7.9111 0.2735 7.0172 15 1 7.0390 0.6787 7.5304 16 6 9.2125 0.6990 7.6467 17 6 10.4063 0.4627 6.9915 18 6 11.6024 0.8575 7.5670 19 9 12.7687 0.6310 6.9240 20 6 11.6028 1.4801 8.8032 21 6 10.4069 1.7115 9.4608 22 9 10.4059 2.3195 10.6673 23 6 9.2117 1.3201 8.8813 24 6 7.8213 -1.2383 6.7499 25 6 2.4947 -2.3459 2.7378 26 6 2.6295 -3.6364 3.2388 27 6 2.2148 -4.7108 2.4824 28 6 1.6633 -4.5193 1.2232 29 6 1.5225 -3.2602 0.7113 30 6 1.9355 -2.1572 1.4606 31 1 -0.3933 0.4418 -0.7650 32 1 1.7923 -0.5138 -0.8901 33 1 1.5880 2.4586 -1.2242 34 1 1.5616 2.4679 1.2085 35 1 2.5871 0.9253 2.4661 36 1 3.0365 -1.5662 5.2654 37 1 3.1500 0.1657 4.8707 38 1 5.2704 -0.5441 6.3743 39 1 7.2646 1.3126 5.1737 40 1 8.8576 0.4515 5.0251 41 1 10.4059 -0.0264 6.0287 42 1 12.5354 1.7853 9.2543 43 1 8.2786 1.5006 9.3943 44 1 8.7921 -1.7184 6.6271 45 1 7.1728 -1.7673 7.4482 46 1 3.0578 -3.7957 4.2173 47 1 2.3207 -5.7122 2.8730 48 1 1.3436 -5.3723 0.6431 49 1 1.0928 -3.1188 -0.2695 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9705374_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:34 Heat of formation + Delta-G solvation = -26.661262 kcal Electronic energy + Delta-G solvation = -35706.855740 eV Core-core repulsion = 30624.278866 eV Total energy + Delta-G solvation = -5082.576874 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.143 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -50.07250 -50.05090 -42.48760 -41.70759 -40.31018 -38.79552 -37.96262 -37.57395 -34.80479 -34.08397 -32.17490 -31.48878 -31.24136 -30.15504 -29.03229 -26.99907 -26.76172 -25.58552 -24.08040 -23.68983 -23.20038 -22.63455 -21.81347 -20.61982 -20.41115 -19.15827 -18.55381 -18.32027 -18.21541 -18.09244 -17.64799 -17.56553 -17.06740 -17.04720 -16.72060 -16.44926 -16.35506 -16.31410 -16.00098 -15.76668 -15.52064 -15.37428 -15.16572 -14.86400 -14.70491 -14.60887 -14.37905 -14.26639 -14.01236 -13.86976 -13.76646 -13.46668 -13.43073 -13.21746 -13.01348 -12.88447 -12.65129 -12.44303 -12.37662 -12.32766 -11.97451 -11.92184 -11.60270 -11.56247 -11.13434 -10.40404 -10.31521 -10.26918 -10.02546 -9.89469 -9.00475 -8.51543 -4.89008 -0.20884 -0.17888 0.29555 0.80507 1.33771 1.36319 1.41275 1.61893 1.66221 1.98380 2.06665 2.13991 2.69614 3.08130 3.10571 3.20746 3.33574 3.37241 3.41977 3.47724 3.61568 3.64293 3.68375 3.72615 3.77031 3.81377 3.83851 3.88176 3.93403 4.08845 4.33044 4.35036 4.36847 4.45883 4.47046 4.51578 4.57298 4.60796 4.67431 4.71309 4.74403 4.80820 4.82056 4.86045 4.86951 4.91999 5.00827 5.13171 5.26813 5.34284 5.61272 5.66022 5.81816 5.86947 5.91137 6.11659 6.30218 6.37813 6.61018 6.95794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.037 4.037 3 Si 0.679 3.321 4 C -0.150 4.150 5 C 0.071 3.929 6 N -0.466 5.466 7 C 0.092 3.908 8 C 0.495 3.505 9 O -0.508 6.508 10 N -0.713 5.713 11 C 0.121 3.879 12 H 0.109 0.891 13 C -0.143 4.143 14 C -0.076 4.076 15 H 0.105 0.895 16 C -0.013 4.013 17 C -0.163 4.163 18 C 0.137 3.863 19 F -0.129 7.129 20 C -0.197 4.197 21 C 0.135 3.865 22 F -0.129 7.129 23 C -0.161 4.161 24 C -0.135 4.135 25 C 0.109 3.891 26 C -0.127 4.127 27 C -0.097 4.097 28 C -0.145 4.145 29 C -0.065 4.065 30 C -0.086 4.086 31 H 0.375 0.625 32 H 0.072 0.928 33 H -0.260 1.260 34 H -0.255 1.255 35 H 0.169 0.831 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.403 0.597 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.115 0.885 47 H 0.125 0.875 48 H 0.123 0.877 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 0.734 2.933 3.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.148 4.148 3 Si 0.580 3.420 4 C -0.157 4.157 5 C -0.053 4.053 6 N -0.150 5.150 7 C -0.034 4.034 8 C 0.278 3.722 9 O -0.381 6.381 10 N -0.366 5.366 11 C 0.015 3.985 12 H 0.127 0.873 13 C -0.181 4.181 14 C -0.094 4.094 15 H 0.124 0.876 16 C -0.014 4.014 17 C -0.182 4.182 18 C 0.117 3.883 19 F -0.107 7.107 20 C -0.217 4.217 21 C 0.116 3.884 22 F -0.108 7.108 23 C -0.180 4.180 24 C -0.172 4.172 25 C 0.005 3.995 26 C -0.148 4.148 27 C -0.116 4.116 28 C -0.165 4.165 29 C -0.083 4.083 30 C -0.090 4.090 31 H 0.223 0.777 32 H 0.090 0.910 33 H -0.184 1.184 34 H -0.180 1.180 35 H 0.186 0.814 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.237 0.763 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.162 0.838 42 H 0.167 0.833 43 H 0.160 0.840 44 H 0.120 0.880 45 H 0.100 0.900 46 H 0.133 0.867 47 H 0.143 0.857 48 H 0.141 0.859 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.473 1.156 3.002 3.251 hybrid contribution -0.834 0.182 0.293 0.903 sum -0.361 1.338 3.294 3.574 Atomic orbital electron populations 1.86643 1.18345 1.79997 1.49387 1.24017 0.83781 1.09794 0.97176 0.95092 0.91795 0.74637 0.80500 1.19422 1.08614 0.91607 0.96065 1.21500 1.01039 0.93908 0.88903 1.43160 1.52618 1.04648 1.14537 1.21577 0.90611 1.05924 0.85310 1.21021 0.89443 0.77253 0.84439 1.90820 1.74563 1.45171 1.27532 1.45624 1.06356 1.72419 1.12170 1.21896 0.79306 0.97828 0.99449 0.87317 1.23638 1.01952 0.98448 0.94108 1.21685 0.94482 0.97008 0.96271 0.87646 1.19297 0.94403 0.94872 0.92789 1.21071 0.90498 1.04288 1.02357 1.17253 0.81733 0.98356 0.90922 1.91567 1.46029 1.92311 1.80778 1.21102 0.99299 1.05260 0.96016 1.17284 0.93648 0.95624 0.81845 1.91563 1.97308 1.80329 1.41555 1.21110 0.97604 1.02570 0.96735 1.23446 1.02196 0.94976 0.96632 1.18147 1.01294 0.85857 0.94215 1.19946 1.04990 0.89207 1.00612 1.20820 0.98382 0.97929 0.94490 1.20659 1.02469 0.96886 0.96441 1.20269 0.98006 0.90944 0.99127 1.18940 1.03313 0.92753 0.93974 0.77746 0.90990 1.18425 1.17956 0.81413 0.86353 0.85935 0.76282 0.90251 0.88358 0.83760 0.83298 0.83953 0.88027 0.90040 0.86707 0.85720 0.85940 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.34 12.86 -35.23 -0.45 -1.79 16 2 C -0.04 -0.06 3.05 36.01 0.11 0.05 16 3 Si 0.68 -0.12 30.80 -169.99 -5.24 -5.35 16 4 C -0.15 -0.50 5.61 -102.71 -0.58 -1.07 16 5 C 0.07 0.12 9.89 -16.74 -0.17 -0.04 16 6 N -0.47 -0.68 2.27 -115.72 -0.26 -0.94 16 7 C 0.09 -0.25 6.48 -5.20 -0.03 -0.29 16 8 C 0.49 -0.50 7.90 -10.99 -0.09 -0.59 16 9 O -0.51 -2.00 16.02 5.56 0.09 -1.91 16 10 N -0.71 2.87 5.26 -52.88 -0.28 2.59 16 11 C 0.12 -0.39 4.34 -66.97 -0.29 -0.68 16 12 H 0.11 -0.11 7.47 -51.93 -0.39 -0.50 16 13 C -0.14 0.52 7.26 -25.78 -0.19 0.33 16 14 C -0.08 0.34 3.86 -90.96 -0.35 -0.01 16 15 H 0.11 -0.61 8.09 -51.93 -0.42 -1.03 16 16 C -0.01 0.03 5.29 -104.64 -0.55 -0.52 16 17 C -0.16 0.27 8.57 -39.50 -0.34 -0.07 16 18 C 0.14 0.00 7.30 -39.43 -0.29 -0.29 16 19 F -0.13 -0.18 17.27 2.25 0.04 -0.14 16 20 C -0.20 0.01 10.01 -39.45 -0.39 -0.38 16 21 C 0.14 0.00 7.30 -39.42 -0.29 -0.29 16 22 F -0.13 -0.16 17.27 2.25 0.04 -0.13 16 23 C -0.16 0.28 9.69 -39.51 -0.38 -0.10 16 24 C -0.13 0.61 7.28 -25.92 -0.19 0.42 16 25 C 0.11 0.39 6.80 -83.99 -0.57 -0.18 16 26 C -0.13 -0.31 10.00 -39.43 -0.39 -0.71 16 27 C -0.10 -0.21 10.01 -39.54 -0.40 -0.60 16 28 C -0.15 -0.37 9.97 -39.95 -0.40 -0.77 16 29 C -0.06 -0.24 10.05 -39.65 -0.40 -0.64 16 30 C -0.09 -0.39 6.35 -105.14 -0.67 -1.06 16 31 H 0.38 -0.63 8.74 45.56 0.40 -0.23 16 32 H 0.07 0.04 7.96 -51.93 -0.41 -0.38 16 33 H -0.26 -0.44 7.11 56.52 0.40 -0.04 16 34 H -0.25 -0.47 7.04 56.52 0.40 -0.08 16 35 H 0.17 -0.15 6.30 -52.48 -0.33 -0.48 16 36 H 0.12 -0.58 8.14 -51.93 -0.42 -1.00 16 37 H 0.12 -0.72 8.12 -51.93 -0.42 -1.14 16 38 H 0.40 -2.83 8.70 -40.82 -0.36 -3.18 16 39 H 0.08 -0.24 8.14 -51.93 -0.42 -0.67 16 40 H 0.10 -0.35 6.32 -51.93 -0.33 -0.68 16 41 H 0.14 -0.44 6.67 -52.49 -0.35 -0.79 16 42 H 0.15 -0.15 8.06 -52.49 -0.42 -0.57 16 43 H 0.14 -0.50 8.05 -52.49 -0.42 -0.92 16 44 H 0.10 -0.44 7.71 -51.93 -0.40 -0.84 16 45 H 0.08 -0.42 8.14 -51.93 -0.42 -0.84 16 46 H 0.11 0.04 8.06 -52.49 -0.42 -0.38 16 47 H 0.12 -0.02 8.06 -52.48 -0.42 -0.44 16 48 H 0.12 0.07 8.06 -52.49 -0.42 -0.36 16 49 H 0.12 0.30 8.06 -52.49 -0.42 -0.13 16 LS Contribution 421.76 15.07 6.36 6.36 Total: 0.00 -10.90 421.76 -12.56 -23.46 By element: Atomic # 1 Polarization: -8.65 SS G_CDS: -6.02 Total: -14.66 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -6.84 Total: -7.48 kcal Atomic # 7 Polarization: 2.18 SS G_CDS: -0.54 Total: 1.64 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: -0.36 Total: -3.71 kcal Atomic # 9 Polarization: -0.34 SS G_CDS: 0.08 Total: -0.26 kcal Atomic # 14 Polarization: -0.12 SS G_CDS: -5.24 Total: -5.35 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -10.90 -12.56 -23.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.199 kcal (2) G-P(sol) polarization free energy of solvation -10.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds