Wall clock time and date at job start Tue Mar 9 2021 13:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86294 * 109.47217 * 2 1 4 4 C 1.50703 * 109.47357 * 120.00276 * 2 1 3 5 5 C 1.34228 * 126.50193 * 255.27176 * 4 2 1 6 6 N 1.36828 * 109.94134 * 180.20049 * 5 4 2 7 7 C 1.46501 * 125.06802 * 179.81278 * 6 5 4 8 8 C 1.50695 * 109.47376 * 264.70306 * 7 6 5 9 9 O 1.21282 * 119.99917 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00305 * 179.97438 * 8 7 6 11 11 C 1.46506 * 120.00033 * 179.97438 * 10 8 7 12 12 H 1.08992 * 112.90684 * 336.24748 * 11 10 8 13 13 C 1.54049 * 113.61276 * 107.61836 * 11 10 8 14 14 C 1.53781 * 87.08031 * 89.07129 * 13 11 10 15 15 H 1.08999 * 113.61181 * 270.87794 * 14 13 11 16 16 C 1.50698 * 113.61565 * 139.97986 * 14 13 11 17 17 C 1.38216 * 119.96972 * 322.22186 * 16 14 13 18 18 C 1.38481 * 120.01860 * 179.77407 * 17 16 14 19 19 F 1.35096 * 120.00894 * 180.25389 * 18 17 16 20 20 C 1.38414 * 119.97726 * 0.48136 * 18 17 16 21 21 C 1.38427 * 119.94851 * 359.77589 * 20 18 17 22 22 F 1.35097 * 120.00892 * 180.02562 * 21 20 18 23 23 C 1.38200 * 119.97569 * 142.50437 * 16 14 13 24 24 C 1.53781 * 87.08070 * 25.42738 * 14 13 11 25 25 C 1.37695 * 109.87020 * 359.55259 * 6 5 4 26 26 C 1.39086 * 133.51236 * 180.28700 * 25 6 5 27 27 C 1.37784 * 119.77752 * 179.97438 * 26 25 6 28 28 C 1.38795 * 120.66798 * 0.02562 * 27 26 25 29 29 C 1.36651 * 120.52630 * 0.02562 * 28 27 26 30 30 C 1.39595 * 119.76494 * 359.95178 * 29 28 27 31 31 H 0.96702 * 113.99816 * 59.99447 * 1 2 3 32 32 H 1.09006 * 109.46863 * 240.00243 * 2 1 3 33 33 H 1.48504 * 110.00384 * 298.68077 * 3 2 1 34 34 H 1.48502 * 110.00303 * 60.00191 * 3 2 1 35 35 H 1.08004 * 125.02960 * 0.04056 * 5 4 2 36 36 H 1.08997 * 109.47520 * 144.69557 * 7 6 5 37 37 H 1.09001 * 109.46568 * 24.69677 * 7 6 5 38 38 H 0.97002 * 120.00078 * 359.97438 * 10 8 7 39 39 H 1.09005 * 113.62125 * 334.52173 * 13 11 10 40 40 H 1.09003 * 113.61268 * 203.61961 * 13 11 10 41 41 H 1.07994 * 119.98740 * 0.02562 * 17 16 14 42 42 H 1.07994 * 120.02915 * 179.79317 * 20 18 17 43 43 H 1.08000 * 119.99092 * 359.97119 * 23 16 14 44 44 H 1.09002 * 113.61445 * 89.11830 * 24 14 13 45 45 H 1.09002 * 113.61408 * 219.93560 * 24 14 13 46 46 H 1.07999 * 120.11146 * 359.97438 * 26 25 6 47 47 H 1.08008 * 119.66517 * 179.97438 * 27 26 25 48 48 H 1.08001 * 119.73511 * 179.97438 * 28 27 26 49 49 H 1.08001 * 120.12103 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.4562 -0.1375 2.3250 6 7 2.8041 -1.0992 3.2339 7 6 3.4098 -0.8408 4.5426 8 6 4.9079 -0.9632 4.4358 9 8 5.4194 -1.2397 3.3715 10 7 5.6794 -0.7656 5.5230 11 6 7.1359 -0.8852 5.4193 12 1 7.4518 -1.5122 4.5856 13 6 7.8727 0.4657 5.4919 14 6 7.9111 0.2735 7.0172 15 1 7.0390 0.6787 7.5304 16 6 9.2125 0.6990 7.6467 17 6 10.4063 0.4627 6.9915 18 6 11.6024 0.8575 7.5670 19 9 12.7687 0.6310 6.9240 20 6 11.6028 1.4801 8.8032 21 6 10.4069 1.7115 9.4608 22 9 10.4059 2.3195 10.6673 23 6 9.2117 1.3201 8.8813 24 6 7.8213 -1.2383 6.7499 25 6 2.4947 -2.3459 2.7378 26 6 2.6295 -3.6364 3.2388 27 6 2.2148 -4.7108 2.4824 28 6 1.6633 -4.5193 1.2232 29 6 1.5225 -3.2602 0.7113 30 6 1.9355 -2.1572 1.4606 31 1 -0.3933 0.4418 -0.7650 32 1 1.7923 -0.5138 -0.8901 33 1 1.5880 2.4586 -1.2242 34 1 1.5616 2.4679 1.2085 35 1 2.5871 0.9253 2.4661 36 1 3.0365 -1.5662 5.2654 37 1 3.1500 0.1657 4.8707 38 1 5.2704 -0.5441 6.3743 39 1 7.2646 1.3126 5.1737 40 1 8.8576 0.4515 5.0251 41 1 10.4059 -0.0264 6.0287 42 1 12.5354 1.7853 9.2543 43 1 8.2786 1.5006 9.3943 44 1 8.7921 -1.7184 6.6271 45 1 7.1728 -1.7673 7.4482 46 1 3.0578 -3.7957 4.2173 47 1 2.3207 -5.7122 2.8730 48 1 1.3436 -5.3723 0.6431 49 1 1.0928 -3.1188 -0.2695 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9705374_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:33 Heat of formation + Delta-G solvation = -23.576801 kcal Electronic energy + Delta-G solvation = -35706.721988 eV Core-core repulsion = 30624.278866 eV Total energy + Delta-G solvation = -5082.443121 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.143 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -50.08199 -50.05757 -42.52218 -41.51082 -40.22275 -38.66187 -38.06375 -37.65664 -34.67739 -34.08504 -32.06959 -31.41886 -31.24280 -30.26846 -28.99789 -26.67739 -26.60152 -25.58112 -24.00100 -23.76274 -23.12200 -22.62838 -21.73047 -20.55187 -20.35389 -19.03888 -18.51988 -18.34076 -18.16774 -18.04640 -17.68559 -17.42304 -17.05155 -16.87798 -16.66615 -16.42699 -16.37794 -16.30961 -15.88456 -15.76525 -15.49797 -15.34986 -15.04638 -14.89703 -14.71500 -14.70592 -14.35554 -14.12074 -14.06242 -13.70253 -13.51538 -13.50158 -13.26917 -13.07326 -12.91149 -12.76672 -12.70140 -12.54718 -12.48112 -12.09109 -12.05927 -11.71431 -11.67164 -11.29861 -11.10924 -10.53021 -10.34120 -10.10547 -9.89666 -9.81140 -9.14495 -8.61975 -4.87322 -0.10282 -0.08414 0.15606 0.65606 1.33874 1.43602 1.49316 1.60785 1.64297 1.94048 2.21999 2.25701 2.77960 2.96004 3.27271 3.39428 3.53526 3.58998 3.60271 3.67035 3.74966 3.78395 3.79524 3.85557 3.91434 3.95082 4.03555 4.07576 4.14054 4.16888 4.24438 4.29083 4.42093 4.58363 4.61711 4.72181 4.73885 4.76352 4.79569 4.79852 4.80519 4.88395 4.91799 4.97661 4.98373 5.06846 5.15303 5.15588 5.33969 5.52529 5.61290 5.67380 5.71980 5.74325 5.76686 6.19185 6.25771 6.51827 6.68007 7.19224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.053 4.053 3 Si 0.762 3.238 4 C -0.182 4.182 5 C 0.074 3.926 6 N -0.466 5.466 7 C 0.086 3.914 8 C 0.496 3.504 9 O -0.565 6.565 10 N -0.694 5.694 11 C 0.117 3.883 12 H 0.082 0.918 13 C -0.143 4.143 14 C -0.065 4.065 15 H 0.130 0.870 16 C -0.009 4.009 17 C -0.160 4.160 18 C 0.117 3.883 19 F -0.142 7.142 20 C -0.207 4.207 21 C 0.117 3.883 22 F -0.140 7.140 23 C -0.153 4.153 24 C -0.126 4.126 25 C 0.091 3.909 26 C -0.133 4.133 27 C -0.107 4.107 28 C -0.153 4.153 29 C -0.088 4.088 30 C -0.118 4.118 31 H 0.389 0.611 32 H 0.072 0.928 33 H -0.285 1.285 34 H -0.276 1.276 35 H 0.193 0.807 36 H 0.144 0.856 37 H 0.160 0.840 38 H 0.421 0.579 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.156 0.844 42 H 0.149 0.851 43 H 0.165 0.835 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.135 0.865 47 H 0.147 0.853 48 H 0.138 0.862 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 1.166 4.648 4.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.161 4.161 3 Si 0.665 3.335 4 C -0.189 4.189 5 C -0.052 4.052 6 N -0.149 5.149 7 C -0.038 4.038 8 C 0.282 3.718 9 O -0.443 6.443 10 N -0.347 5.347 11 C 0.011 3.989 12 H 0.100 0.900 13 C -0.181 4.181 14 C -0.083 4.083 15 H 0.148 0.852 16 C -0.009 4.009 17 C -0.179 4.179 18 C 0.097 3.903 19 F -0.120 7.120 20 C -0.226 4.226 21 C 0.097 3.903 22 F -0.119 7.119 23 C -0.172 4.172 24 C -0.163 4.163 25 C -0.014 4.014 26 C -0.153 4.153 27 C -0.126 4.126 28 C -0.172 4.172 29 C -0.106 4.106 30 C -0.122 4.122 31 H 0.239 0.761 32 H 0.090 0.910 33 H -0.211 1.211 34 H -0.203 1.203 35 H 0.210 0.790 36 H 0.162 0.838 37 H 0.178 0.822 38 H 0.259 0.741 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.173 0.827 42 H 0.167 0.833 43 H 0.182 0.818 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.153 0.847 47 H 0.164 0.836 48 H 0.155 0.845 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.258 1.579 4.773 5.034 hybrid contribution -0.607 0.017 -0.241 0.654 sum -0.865 1.597 4.532 4.882 Atomic orbital electron populations 1.86592 1.19184 1.80694 1.50513 1.24363 0.83362 1.11623 0.96798 0.94098 0.90454 0.71331 0.77665 1.19758 1.10159 0.91506 0.97472 1.21912 0.99777 0.95010 0.88471 1.43399 1.52009 1.03758 1.15692 1.21993 0.89052 1.08917 0.83859 1.21314 0.90236 0.76225 0.84058 1.90810 1.75596 1.48094 1.29764 1.45458 1.05915 1.70982 1.12342 1.21833 0.79770 0.97863 0.99423 0.89991 1.23620 1.01669 0.97964 0.94849 1.21735 0.94194 0.96943 0.95455 0.85211 1.19496 0.94866 0.94149 0.92437 1.21282 0.90279 1.03568 1.02727 1.17453 0.81909 0.99604 0.91308 1.91529 1.46863 1.92584 1.81036 1.21183 0.99682 1.05526 0.96234 1.17483 0.94348 0.96617 0.81807 1.91532 1.97385 1.80720 1.42251 1.21378 0.97765 1.01335 0.96724 1.23396 1.02115 0.95046 0.95783 1.18407 1.01610 0.87057 0.94316 1.20256 1.04629 0.88921 1.01503 1.21148 0.98096 0.99045 0.94335 1.20923 1.02324 0.96966 0.97018 1.20442 0.99065 0.91644 0.99490 1.19361 1.04165 0.93693 0.95032 0.76115 0.90970 1.21145 1.20256 0.78991 0.83818 0.82229 0.74059 0.90417 0.88794 0.82658 0.83310 0.81751 0.88357 0.88627 0.84679 0.83561 0.84463 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.56 12.86 -148.98 -1.92 -5.47 16 2 C -0.05 -0.23 3.05 71.24 0.22 -0.01 16 3 Si 0.76 -0.27 30.80 68.60 2.11 1.84 16 4 C -0.18 -1.42 5.61 -18.63 -0.10 -1.52 16 5 C 0.07 0.25 9.89 83.00 0.82 1.07 16 6 N -0.47 -1.13 2.27 -520.01 -1.18 -2.31 16 7 C 0.09 -0.66 6.48 85.63 0.56 -0.10 16 8 C 0.50 -1.58 7.90 87.66 0.69 -0.89 16 9 O -0.57 -4.74 16.02 -3.04 -0.05 -4.79 16 10 N -0.69 6.96 5.26 -439.60 -2.31 4.65 16 11 C 0.12 -0.87 4.34 45.61 0.20 -0.67 16 12 H 0.08 -0.10 7.47 -2.39 -0.02 -0.12 16 13 C -0.14 1.21 7.26 31.21 0.23 1.43 16 14 C -0.07 0.74 3.86 -11.01 -0.04 0.70 16 15 H 0.13 -2.04 8.09 -2.39 -0.02 -2.05 16 16 C -0.01 0.06 5.29 -19.88 -0.11 -0.05 16 17 C -0.16 0.59 8.57 22.32 0.19 0.78 16 18 C 0.12 0.08 7.30 22.37 0.16 0.25 16 19 F -0.14 -0.56 17.27 44.97 0.78 0.21 16 20 C -0.21 -0.15 10.01 22.36 0.22 0.07 16 21 C 0.12 -0.01 7.30 22.37 0.16 0.15 16 22 F -0.14 -0.39 17.27 44.97 0.78 0.39 16 23 C -0.15 0.77 9.69 22.32 0.22 0.99 16 24 C -0.13 1.38 7.28 31.12 0.23 1.61 16 25 C 0.09 0.70 6.80 39.03 0.27 0.97 16 26 C -0.13 -0.66 10.00 22.37 0.22 -0.44 16 27 C -0.11 -0.49 10.01 22.30 0.22 -0.27 16 28 C -0.15 -0.97 9.97 22.03 0.22 -0.76 16 29 C -0.09 -0.84 10.05 22.23 0.22 -0.62 16 30 C -0.12 -1.28 6.35 -20.20 -0.13 -1.41 16 31 H 0.39 -0.83 8.74 -74.06 -0.65 -1.48 16 32 H 0.07 0.21 7.96 -2.38 -0.02 0.19 16 33 H -0.28 -1.03 7.11 99.48 0.71 -0.32 16 34 H -0.28 -0.86 7.04 99.48 0.70 -0.16 16 35 H 0.19 -0.57 6.30 -2.91 -0.02 -0.58 16 36 H 0.14 -1.82 8.14 -2.39 -0.02 -1.84 16 37 H 0.16 -2.44 8.12 -2.39 -0.02 -2.46 16 38 H 0.42 -7.35 8.70 -92.71 -0.81 -8.15 16 39 H 0.08 -0.59 8.14 -2.38 -0.02 -0.61 16 40 H 0.09 -0.70 6.32 -2.39 -0.02 -0.72 16 41 H 0.16 -0.99 6.67 -2.91 -0.02 -1.01 16 42 H 0.15 -0.06 8.06 -2.91 -0.02 -0.08 16 43 H 0.16 -1.60 8.05 -2.91 -0.02 -1.63 16 44 H 0.10 -0.96 7.71 -2.39 -0.02 -0.98 16 45 H 0.10 -1.27 8.14 -2.39 -0.02 -1.28 16 46 H 0.14 -0.05 8.06 -2.91 -0.02 -0.07 16 47 H 0.15 -0.12 8.06 -2.91 -0.02 -0.14 16 48 H 0.14 0.27 8.06 -2.91 -0.02 0.25 16 49 H 0.12 0.94 8.06 -2.91 -0.02 0.92 16 Total: 0.00 -29.01 421.76 2.48 -26.53 By element: Atomic # 1 Polarization: -21.95 SS G_CDS: -0.39 Total: -22.34 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 4.67 Total: 1.29 kcal Atomic # 7 Polarization: 5.84 SS G_CDS: -3.49 Total: 2.34 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -1.96 Total: -10.26 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 1.55 Total: 0.60 kcal Atomic # 14 Polarization: -0.27 SS G_CDS: 2.11 Total: 1.84 kcal Total: -29.01 2.48 -26.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9705374_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.951 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds