Wall clock time and date at job start Tue Mar 9 2021 13:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38213 * 120.00147 * 2 1 4 4 C 1.50697 * 119.99969 * 0.02562 * 3 2 1 5 5 H 1.09006 * 112.84872 * 11.21577 * 4 3 2 6 6 C 1.53783 * 113.61756 * 142.51877 * 4 3 2 7 7 C 1.53786 * 87.08190 * 139.97982 * 6 4 3 8 8 H 1.08998 * 113.69348 * 220.00793 * 7 6 4 9 9 N 1.46501 * 113.61317 * 89.11791 * 7 6 4 10 10 C 1.34773 * 120.00203 * 107.50209 * 9 7 6 11 11 O 1.21275 * 119.99869 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00188 * 180.02562 * 10 9 7 13 13 C 1.53005 * 109.46704 * 299.99989 * 12 10 9 14 14 O 1.42899 * 109.47015 * 180.02562 * 12 10 9 15 15 C 1.35895 * 116.99920 * 204.94782 * 14 12 10 16 16 C 1.38729 * 120.05724 * 174.27703 * 15 14 12 17 17 C 1.38148 * 119.94526 * 179.69931 * 16 15 14 18 18 C 1.38271 * 120.05292 * 0.59878 * 17 16 15 19 19 C 1.50699 * 119.94115 * 179.70040 * 18 17 16 20 20 O 1.42897 * 109.47127 * 244.97443 * 19 18 17 21 21 Si 1.86299 * 109.47228 * 4.97548 * 19 18 17 22 22 C 1.38265 * 120.11192 * 359.67362 * 18 17 16 23 23 C 1.38146 * 120.05498 * 0.02644 * 22 18 17 24 24 C 1.53784 * 113.61479 * 240.01973 * 4 3 2 25 25 C 1.38259 * 120.00419 * 180.02562 * 3 2 1 26 26 C 1.38210 * 119.99609 * 359.96361 * 25 3 2 27 27 C 1.38262 * 120.00144 * 0.27322 * 26 25 3 28 28 C 1.38207 * 119.99927 * 359.53490 * 27 26 25 29 29 H 1.08996 * 109.47286 * 89.99553 * 1 2 3 30 30 H 1.08998 * 109.47069 * 209.99816 * 1 2 3 31 31 H 1.08999 * 109.47106 * 329.99122 * 1 2 3 32 32 H 1.08996 * 113.61647 * 254.52966 * 6 4 3 33 33 H 1.08999 * 113.61169 * 25.43357 * 6 4 3 34 34 H 0.97001 * 119.99952 * 287.50801 * 9 7 6 35 35 H 1.09000 * 109.47096 * 59.99723 * 12 10 9 36 36 H 1.09000 * 109.47127 * 299.99715 * 13 12 10 37 37 H 1.08997 * 109.47281 * 60.00561 * 13 12 10 38 38 H 1.08999 * 109.46490 * 179.97438 * 13 12 10 39 39 H 1.08002 * 120.03104 * 359.97438 * 16 15 14 40 40 H 1.07996 * 119.97359 * 180.31476 * 17 16 15 41 41 H 1.09006 * 109.47105 * 124.97760 * 19 18 17 42 42 H 0.96702 * 113.99804 * 60.00233 * 20 19 18 43 43 H 1.48504 * 110.00004 * 179.97438 * 21 19 18 44 44 H 1.48497 * 109.99983 * 301.31753 * 21 19 18 45 45 H 1.07999 * 119.97102 * 180.02562 * 22 18 17 46 46 H 1.08000 * 120.02737 * 179.97438 * 23 22 18 47 47 H 1.08995 * 113.61138 * 334.56219 * 24 4 3 48 48 H 1.08998 * 113.61486 * 105.46762 * 24 4 3 49 49 H 1.07996 * 120.00549 * 179.97438 * 25 3 2 50 50 H 1.08003 * 119.99653 * 179.97438 * 26 25 3 51 51 H 1.08003 * 119.99535 * 179.71915 * 27 26 25 52 52 H 1.08002 * 119.99902 * 180.21506 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1969 0.0000 4 6 1.4446 2.5020 0.0006 5 1 0.3797 2.3759 0.1964 6 6 2.1052 3.5945 0.8580 7 6 1.7290 4.5859 -0.2558 8 1 2.5026 5.3249 -0.4641 9 7 0.4023 5.1837 -0.0858 10 6 0.2872 6.4742 0.2851 11 8 1.2818 7.1408 0.4777 12 6 -1.0776 7.0890 0.4605 13 6 -1.8441 7.0145 -0.8615 14 8 -0.9374 8.4558 0.8530 15 6 -1.9698 9.0088 1.5423 16 6 -1.8535 10.2917 2.0573 17 6 -2.9067 10.8539 2.7523 18 6 -4.0716 10.1344 2.9455 19 6 -5.2165 10.7476 3.7098 20 8 -5.4311 10.0132 4.9167 21 14 -4.8092 12.5177 4.1241 22 6 -4.1879 8.8535 2.4381 23 6 -3.1398 8.2891 1.7371 24 6 1.7459 3.3879 -1.2199 25 6 3.5806 1.1970 -0.0005 26 6 4.2717 0.0001 -0.0003 27 6 3.5804 -1.1973 -0.0053 28 6 2.1983 -1.1973 -0.0007 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.5905 3.7807 1.8005 33 1 3.1803 3.4628 0.9804 34 1 -0.3932 4.6506 -0.2401 35 1 -1.6254 6.5441 1.2294 36 1 -1.2963 7.5594 -1.6304 37 1 -1.9511 5.9720 -1.1613 38 1 -2.8314 7.4587 -0.7345 39 1 -0.9419 10.8522 1.9112 40 1 -2.8186 11.8545 3.1490 41 1 -6.1192 10.7157 3.0997 42 1 -4.6673 9.9991 5.5096 43 1 -5.9308 13.1340 4.8775 44 1 -3.5627 12.5771 4.9290 45 1 -5.0989 8.2937 2.5900 46 1 -3.2310 7.2884 1.3413 47 1 2.7227 3.1997 -1.6653 48 1 0.9410 3.4073 -1.9546 49 1 4.1207 2.1323 -0.0010 50 1 5.3517 0.0001 -0.0011 51 1 4.1205 -2.1326 -0.0097 52 1 1.6583 -2.1327 -0.0011 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_10157680.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:40 Heat of formation + Delta-G solvation = -17.276275 kcal Electronic energy + Delta-G solvation = -32098.403521 eV Core-core repulsion = 27802.799943 eV Total energy + Delta-G solvation = -4295.603578 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.182 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.97738 -41.37607 -40.43292 -39.29255 -38.59965 -37.26523 -34.97005 -33.78212 -33.07790 -32.06200 -31.67418 -31.14825 -27.86183 -26.79707 -26.71853 -26.31709 -25.27530 -24.17007 -23.13136 -22.47260 -21.86936 -21.49850 -20.16310 -19.46612 -18.66058 -18.27833 -17.74041 -17.17800 -16.85403 -16.75592 -16.46614 -16.29032 -16.18657 -15.97555 -15.63466 -15.55471 -15.25766 -14.95933 -14.85804 -14.77059 -14.38283 -14.33224 -14.24840 -13.97067 -13.76260 -13.56837 -13.43919 -13.34612 -13.27670 -13.16534 -12.92253 -12.82729 -12.71301 -12.23831 -12.15197 -12.06706 -12.04771 -11.72767 -11.58497 -11.50168 -11.18549 -10.95603 -10.58476 -10.20259 -10.04036 -9.67489 -9.42266 -9.23562 -4.91749 0.24315 0.32703 0.43144 0.48155 1.32864 1.35822 1.47215 1.59779 1.95462 2.46141 2.64276 2.79981 3.41530 3.45072 3.45451 3.63639 3.66288 3.70952 3.72895 3.83575 3.86037 3.92415 3.94223 4.01676 4.06463 4.17750 4.24500 4.26546 4.35358 4.41989 4.54989 4.58568 4.59486 4.62124 4.66079 4.70768 4.74613 4.80424 4.82487 4.87045 4.93722 4.99079 4.99412 5.00821 5.10368 5.12973 5.19087 5.19410 5.28876 5.34038 5.47479 5.48187 5.62987 5.64160 5.68137 5.78613 6.14527 6.25004 6.42623 6.49287 7.06751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.081 4.081 4 C -0.068 4.068 5 H 0.119 0.881 6 C -0.145 4.145 7 C 0.117 3.883 8 H 0.083 0.917 9 N -0.689 5.689 10 C 0.519 3.481 11 O -0.568 6.568 12 C 0.065 3.935 13 C -0.173 4.173 14 O -0.312 6.312 15 C 0.121 3.879 16 C -0.160 4.160 17 C -0.078 4.078 18 C -0.158 4.158 19 C -0.072 4.072 20 O -0.548 6.548 21 Si 0.757 3.243 22 C -0.055 4.055 23 C -0.207 4.207 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.138 4.138 27 C -0.133 4.133 28 C -0.135 4.135 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.420 0.580 35 H 0.126 0.874 36 H 0.061 0.939 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.145 0.855 41 H 0.128 0.872 42 H 0.385 0.615 43 H -0.303 1.303 44 H -0.286 1.286 45 H 0.141 0.859 46 H 0.155 0.845 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.130 0.870 50 H 0.130 0.870 51 H 0.131 0.869 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.076 -4.136 -3.805 6.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.081 4.081 4 C -0.086 4.086 5 H 0.136 0.864 6 C -0.183 4.183 7 C 0.011 3.989 8 H 0.102 0.898 9 N -0.343 5.343 10 C 0.305 3.695 11 O -0.446 6.446 12 C 0.005 3.995 13 C -0.230 4.230 14 O -0.226 6.226 15 C 0.075 3.925 16 C -0.179 4.179 17 C -0.096 4.096 18 C -0.158 4.158 19 C -0.182 4.182 20 O -0.356 6.356 21 Si 0.663 3.337 22 C -0.073 4.073 23 C -0.226 4.226 24 C -0.160 4.160 25 C -0.142 4.142 26 C -0.156 4.156 27 C -0.151 4.151 28 C -0.153 4.153 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.258 0.742 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.129 0.871 38 H 0.105 0.895 39 H 0.151 0.849 40 H 0.163 0.837 41 H 0.146 0.854 42 H 0.234 0.766 43 H -0.231 1.231 44 H -0.213 1.213 45 H 0.159 0.841 46 H 0.173 0.827 47 H 0.115 0.885 48 H 0.111 0.889 49 H 0.148 0.852 50 H 0.148 0.852 51 H 0.148 0.852 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.639 -3.080 -3.385 5.847 hybrid contribution 0.486 -1.161 0.998 1.606 sum -3.153 -4.241 -2.387 5.799 Atomic orbital electron populations 1.20912 0.89844 1.03537 1.03126 1.20099 0.97276 0.92569 0.99456 1.19703 0.93498 0.94455 1.00398 1.21695 1.00259 0.89702 0.96945 0.86363 1.23562 1.01941 0.94998 0.97805 1.21845 0.85027 0.94467 0.97523 0.89847 1.45371 1.09496 1.10317 1.69108 1.20558 0.90595 0.82335 0.76049 1.90753 1.40515 1.62515 1.50835 1.22414 0.93974 0.82121 1.00950 1.22385 1.00902 1.05667 0.94026 1.86185 1.40596 1.26470 1.69306 1.19264 0.87211 0.93630 0.92352 1.20575 1.00996 0.94249 1.02079 1.21002 0.91866 0.99696 0.97021 1.20255 0.96236 0.96346 1.03002 1.25056 1.00361 1.05838 0.86901 1.86565 1.43320 1.74309 1.31454 0.94130 0.75917 0.75845 0.87759 1.21011 0.98496 0.94127 0.93687 1.21533 0.93310 1.02155 1.05557 1.23344 1.04204 0.92255 0.96151 1.21207 0.94135 0.98490 1.00359 1.21379 1.00693 0.92756 1.00791 1.21401 0.94761 0.98742 1.00219 1.21314 0.94569 0.98301 1.01071 0.90240 0.91302 0.90132 0.91371 0.88918 0.74196 0.85713 0.91984 0.87132 0.89472 0.84883 0.83737 0.85425 0.76582 1.23125 1.21337 0.84104 0.82726 0.88510 0.88868 0.85220 0.85192 0.85153 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.61 9.53 71.23 0.68 1.29 16 2 C -0.09 0.01 5.88 -19.87 -0.12 -0.11 16 3 C -0.08 0.04 5.29 -19.87 -0.11 -0.06 16 4 C -0.07 0.34 3.58 -11.01 -0.04 0.30 16 5 H 0.12 -1.00 5.76 -2.38 -0.01 -1.01 16 6 C -0.14 0.33 7.25 31.12 0.23 0.55 16 7 C 0.12 -0.24 4.33 45.52 0.20 -0.04 16 8 H 0.08 0.28 7.46 -2.39 -0.02 0.26 16 9 N -0.69 2.93 5.16 -440.03 -2.27 0.66 16 10 C 0.52 1.68 7.23 87.66 0.63 2.32 16 11 O -0.57 -8.36 16.10 16.02 0.26 -8.10 16 12 C 0.06 -0.10 2.65 29.85 0.08 -0.02 16 13 C -0.17 1.21 9.07 71.98 0.65 1.86 16 14 O -0.31 -1.95 9.33 -73.34 -0.68 -2.63 16 15 C 0.12 0.42 6.60 22.51 0.15 0.57 16 16 C -0.16 -0.56 9.99 22.37 0.22 -0.33 16 17 C -0.08 -0.03 8.66 22.26 0.19 0.16 16 18 C -0.16 0.05 5.35 -19.85 -0.11 -0.06 16 19 C -0.07 0.09 2.80 71.24 0.20 0.29 16 20 O -0.55 -1.06 12.83 -148.98 -1.91 -2.97 16 21 Si 0.76 -1.12 29.88 68.60 2.05 0.93 16 22 C -0.06 0.06 9.68 22.25 0.22 0.27 16 23 C -0.21 0.26 8.24 22.37 0.18 0.45 16 24 C -0.12 0.70 7.29 31.12 0.23 0.92 16 25 C -0.12 -0.09 8.61 22.27 0.19 0.10 16 26 C -0.14 -0.21 10.05 22.27 0.22 0.01 16 27 C -0.13 -0.21 10.05 22.27 0.22 0.01 16 28 C -0.13 -0.15 9.70 22.27 0.22 0.07 16 29 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.07 -0.37 8.09 -2.39 -0.02 -0.39 16 31 H 0.08 -0.62 5.99 -2.39 -0.01 -0.64 16 32 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.09 -0.13 6.31 -2.39 -0.02 -0.15 16 34 H 0.42 -4.94 8.12 -92.71 -0.75 -5.69 16 35 H 0.13 -0.87 6.31 -2.39 -0.02 -0.89 16 36 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.11 -1.50 7.56 -2.39 -0.02 -1.52 16 38 H 0.09 -0.69 6.91 -2.39 -0.02 -0.71 16 39 H 0.13 0.43 8.06 -2.91 -0.02 0.40 16 40 H 0.15 -0.42 4.83 -2.91 -0.01 -0.43 16 41 H 0.13 -0.43 7.96 -2.38 -0.02 -0.45 16 42 H 0.39 -1.17 8.70 -74.06 -0.64 -1.81 16 43 H -0.30 -1.88 7.11 99.48 0.71 -1.18 16 44 H -0.29 -0.80 7.01 99.48 0.70 -0.10 16 45 H 0.14 -0.50 8.06 -2.91 -0.02 -0.53 16 46 H 0.16 -1.09 5.43 -2.91 -0.02 -1.11 16 47 H 0.10 -0.45 7.72 -2.39 -0.02 -0.47 16 48 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 49 H 0.13 -0.22 6.66 -2.91 -0.02 -0.24 16 50 H 0.13 -0.17 8.06 -2.91 -0.02 -0.19 16 51 H 0.13 -0.18 8.06 -2.91 -0.02 -0.21 16 52 H 0.13 -0.24 8.06 -2.91 -0.02 -0.27 16 Total: 0.00 -23.89 415.90 1.38 -22.50 By element: Atomic # 1 Polarization: -18.53 SS G_CDS: -0.40 Total: -18.93 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 4.35 Total: 8.54 kcal Atomic # 7 Polarization: 2.93 SS G_CDS: -2.27 Total: 0.66 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -2.34 Total: -13.70 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: 2.05 Total: 0.93 kcal Total: -23.89 1.38 -22.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_10157680.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.226 kcal (2) G-P(sol) polarization free energy of solvation -23.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds