Wall clock time and date at job start Tue Mar 9 2021 13:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38209 * 119.99926 * 2 1 4 4 C 1.50692 * 120.00361 * 359.97438 * 3 2 1 5 5 H 1.09004 * 112.90785 * 10.97434 * 4 3 2 6 6 C 1.53784 * 113.61665 * 142.22827 * 4 3 2 7 7 C 1.53778 * 87.08081 * 139.98095 * 6 4 3 8 8 H 1.08999 * 113.61526 * 220.02035 * 7 6 4 9 9 N 1.46500 * 113.69512 * 89.12825 * 7 6 4 10 10 C 1.34773 * 120.00071 * 107.46146 * 9 7 6 11 11 O 1.21724 * 120.00339 * 0.02562 * 10 9 7 12 12 C 1.46571 * 119.99927 * 180.02562 * 10 9 7 13 13 C 1.40852 * 126.57797 * 180.02562 * 12 10 9 14 14 C 1.40093 * 132.86833 * 359.97438 * 13 12 10 15 15 C 1.36445 * 119.25387 * 179.97438 * 14 13 12 16 16 C 1.50707 * 120.29580 * 179.97438 * 15 14 13 17 17 O 1.42896 * 109.47084 * 119.99349 * 16 15 14 18 18 Si 1.86291 * 109.47242 * 239.99842 * 16 15 14 19 19 C 1.40158 * 119.41328 * 359.97438 * 15 14 13 20 20 C 1.35179 * 120.31530 * 359.97438 * 19 15 14 21 21 N 1.36243 * 120.71200 * 0.04431 * 20 19 15 22 22 N 1.40013 * 132.01665 * 180.02562 * 21 20 19 23 23 C 1.30743 * 109.60414 * 179.68706 * 22 21 20 24 24 C 1.53778 * 87.08449 * 334.56700 * 7 6 4 25 25 C 1.38262 * 119.99313 * 179.72123 * 3 2 1 26 26 C 1.38205 * 120.00185 * 0.27778 * 25 3 2 27 27 C 1.38255 * 120.00219 * 359.97438 * 26 25 3 28 28 C 1.38214 * 119.99901 * 359.95446 * 27 26 25 29 29 H 1.08995 * 109.46637 * 89.99808 * 1 2 3 30 30 H 1.08995 * 109.47302 * 210.00298 * 1 2 3 31 31 H 1.09003 * 109.46699 * 330.00441 * 1 2 3 32 32 H 1.08993 * 113.61313 * 254.52692 * 6 4 3 33 33 H 1.09000 * 113.61578 * 25.43424 * 6 4 3 34 34 H 0.97005 * 119.99931 * 287.46791 * 9 7 6 35 35 H 1.08005 * 120.37234 * 359.97438 * 14 13 12 36 36 H 1.09001 * 109.46828 * 0.02562 * 16 15 14 37 37 H 0.96700 * 113.99923 * 60.00563 * 17 16 15 38 38 H 1.48500 * 110.00024 * 179.97438 * 18 16 15 39 39 H 1.48501 * 110.00231 * 301.31690 * 18 16 15 40 40 H 1.07995 * 119.84143 * 180.02562 * 19 15 14 41 41 H 1.08010 * 119.64505 * 179.97438 * 20 19 15 42 42 H 1.08003 * 125.63106 * 180.24652 * 23 22 21 43 43 H 1.08998 * 113.61879 * 270.88747 * 24 7 6 44 44 H 1.08997 * 113.69304 * 139.98833 * 24 7 6 45 45 H 1.08004 * 119.99281 * 180.25125 * 25 3 2 46 46 H 1.08004 * 120.00054 * 179.97438 * 26 25 3 47 47 H 1.08001 * 120.00009 * 179.97438 * 27 26 25 48 48 H 1.08000 * 119.99962 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1969 0.0000 4 6 1.4448 2.5020 -0.0006 5 1 0.3789 2.3767 0.1902 6 6 2.1010 3.5926 0.8625 7 6 1.7305 4.5863 -0.2511 8 1 2.5062 5.3250 -0.4529 9 7 0.4034 5.1851 -0.0883 10 6 0.2872 6.4750 0.2846 11 8 1.2849 7.1427 0.4857 12 6 -1.0406 7.0738 0.4480 13 6 -1.3220 8.4001 0.8297 14 6 -0.5064 9.4925 1.1523 15 6 -1.0860 10.6803 1.4910 16 6 -0.2311 11.8705 1.8428 17 8 -0.5057 12.9393 0.9350 18 14 -0.6147 12.4184 3.5815 19 6 -2.4837 10.7839 1.5088 20 6 -3.2510 9.7168 1.1928 21 7 -2.6817 8.5264 0.8537 22 7 -3.2352 7.2925 0.4910 23 6 -2.2772 6.4372 0.2457 24 6 1.7524 3.3904 -1.2176 25 6 3.5808 1.1968 0.0058 26 6 4.2717 -0.0001 0.0058 27 6 3.5804 -1.1974 0.0006 28 6 2.1983 -1.1974 -0.0038 29 1 -0.3632 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5138 32 1 1.5814 3.7769 1.8027 33 1 3.1754 3.4607 0.9903 34 1 -0.3917 4.6531 -0.2488 35 1 0.5691 9.3954 1.1331 36 1 0.8213 11.5955 1.7719 37 1 -1.4259 13.2364 0.9440 38 1 0.2225 13.5912 3.9408 39 1 -2.0536 12.7660 3.6988 40 1 -2.9498 11.7209 1.7755 41 1 -4.3271 9.8086 1.2105 42 1 -2.4136 5.4099 -0.0588 43 1 2.7315 3.2031 -1.6584 44 1 0.9520 3.4103 -1.9571 45 1 4.1207 2.1321 0.0099 46 1 5.3517 -0.0002 0.0100 47 1 4.1204 -2.1328 0.0002 48 1 1.6582 -2.1327 -0.0075 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9744652_11618758.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:55 Heat of formation + Delta-G solvation = 91.298434 kcal Electronic energy + Delta-G solvation = -31226.668862 eV Core-core repulsion = 27022.689145 eV Total energy + Delta-G solvation = -4203.979717 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.31784 -41.53391 -40.15509 -39.42641 -38.54468 -37.35254 -34.49922 -34.18924 -33.70075 -32.13250 -31.66060 -30.22822 -27.91499 -27.36663 -26.70635 -26.12269 -25.02691 -23.93984 -23.17156 -22.78930 -21.80854 -21.30324 -20.03371 -19.15429 -18.65442 -18.00401 -17.75747 -17.37274 -16.96563 -16.86407 -16.59794 -16.38806 -16.00651 -15.86006 -15.57146 -15.50383 -15.17901 -14.92439 -14.84076 -14.75822 -14.27409 -14.24321 -13.97753 -13.86287 -13.60158 -13.54172 -13.44756 -13.27572 -13.24713 -12.80376 -12.67845 -12.49741 -12.11042 -12.05035 -11.93448 -11.69260 -11.56347 -11.51336 -11.13782 -10.92504 -10.76271 -10.38420 -9.98381 -9.62771 -9.39389 -8.78350 -5.06656 -0.57505 -0.17781 0.47555 0.52875 0.97194 1.05717 1.10468 1.46895 1.79500 2.04518 2.22498 2.58414 2.84331 3.03524 3.12847 3.26040 3.40546 3.48203 3.61091 3.69450 3.74735 3.82832 3.93088 3.97182 4.00962 4.05220 4.10339 4.13961 4.23309 4.24665 4.32828 4.39509 4.48861 4.60720 4.64796 4.69121 4.72179 4.74256 4.79811 4.89376 4.91762 4.99742 5.03941 5.06043 5.13433 5.18470 5.20368 5.24755 5.29087 5.60924 5.61878 5.67854 5.69253 5.81617 6.16050 6.20483 6.29139 6.61940 7.40430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.083 4.083 3 C -0.072 4.072 4 C -0.078 4.078 5 H 0.101 0.899 6 C -0.144 4.144 7 C 0.124 3.876 8 H 0.106 0.894 9 N -0.712 5.712 10 C 0.604 3.396 11 O -0.546 6.546 12 C -0.315 4.315 13 C 0.170 3.830 14 C -0.090 4.090 15 C -0.066 4.066 16 C -0.076 4.076 17 O -0.521 6.521 18 Si 0.696 3.304 19 C -0.162 4.162 20 C 0.123 3.877 21 N -0.267 5.267 22 N -0.313 5.313 23 C 0.120 3.880 24 C -0.135 4.135 25 C -0.113 4.113 26 C -0.123 4.123 27 C -0.120 4.120 28 C -0.120 4.120 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.398 0.602 35 H 0.166 0.834 36 H 0.127 0.873 37 H 0.375 0.625 38 H -0.247 1.247 39 H -0.253 1.253 40 H 0.157 0.843 41 H 0.177 0.823 42 H 0.198 0.802 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 -1.283 1.531 3.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.083 4.083 3 C -0.072 4.072 4 C -0.096 4.096 5 H 0.119 0.881 6 C -0.183 4.183 7 C 0.019 3.981 8 H 0.124 0.876 9 N -0.362 5.362 10 C 0.394 3.606 11 O -0.425 6.425 12 C -0.330 4.330 13 C 0.049 3.951 14 C -0.109 4.109 15 C -0.072 4.072 16 C -0.184 4.184 17 O -0.327 6.327 18 Si 0.594 3.406 19 C -0.183 4.183 20 C -0.003 4.003 21 N -0.031 5.031 22 N -0.133 5.133 23 C -0.061 4.061 24 C -0.173 4.173 25 C -0.131 4.131 26 C -0.141 4.141 27 C -0.138 4.138 28 C -0.138 4.138 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.232 0.768 35 H 0.183 0.817 36 H 0.144 0.856 37 H 0.223 0.777 38 H -0.171 1.171 39 H -0.177 1.177 40 H 0.174 0.826 41 H 0.194 0.806 42 H 0.215 0.785 43 H 0.116 0.884 44 H 0.094 0.906 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.849 -0.167 2.053 3.516 hybrid contribution -0.288 -0.209 -1.026 1.086 sum -3.137 -0.376 1.027 3.323 Atomic orbital electron populations 1.20873 0.91364 1.02854 1.02425 1.19787 0.96004 0.92668 0.99879 1.19518 0.93464 0.93781 1.00399 1.21688 0.99705 0.90812 0.97378 0.88093 1.23573 1.01814 0.94709 0.98181 1.21795 0.85591 0.94523 0.96225 0.87604 1.45353 1.08305 1.11524 1.71022 1.16805 0.87118 0.81035 0.75683 1.90788 1.38454 1.61593 1.51648 1.19599 0.94128 0.93518 1.25736 1.19290 0.83718 0.95004 0.97073 1.20703 1.01665 0.89345 0.99219 1.20417 0.94000 0.96295 0.96442 1.25085 1.02626 0.85803 1.04929 1.86710 1.33135 1.51607 1.61288 0.94395 0.81193 0.86728 0.78273 1.20705 0.93235 0.99125 1.05271 1.21515 1.00526 0.81166 0.97086 1.46076 1.05506 1.09240 1.42248 1.77643 1.20605 0.88082 1.26968 1.24064 0.89257 0.99325 0.93452 1.23416 1.03510 0.94117 0.96266 1.21002 0.93619 0.98173 1.00316 1.21145 0.99959 0.92521 1.00520 1.21161 0.94346 0.98186 1.00152 1.21052 0.94346 0.97498 1.00861 0.91074 0.91538 0.91215 0.90712 0.88724 0.76774 0.81702 0.85557 0.77719 1.17112 1.17679 0.82598 0.80566 0.78523 0.88432 0.90562 0.85923 0.86088 0.86135 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.15 9.53 36.01 0.34 0.49 16 2 C -0.08 -0.06 5.88 -104.62 -0.62 -0.68 16 3 C -0.07 -0.03 5.29 -104.63 -0.55 -0.59 16 4 C -0.08 0.10 3.58 -90.96 -0.33 -0.22 16 5 H 0.10 -0.23 5.76 -51.93 -0.30 -0.53 16 6 C -0.14 0.09 7.26 -25.92 -0.19 -0.09 16 7 C 0.12 -0.04 4.32 -67.12 -0.29 -0.33 16 8 H 0.11 0.14 7.46 -51.93 -0.39 -0.25 16 9 N -0.71 0.30 5.26 -54.36 -0.29 0.01 16 10 C 0.60 1.61 7.78 -12.90 -0.10 1.51 16 11 O -0.55 -3.19 15.30 5.17 0.08 -3.11 16 12 C -0.32 -0.66 6.17 -104.68 -0.65 -1.31 16 13 C 0.17 0.42 6.76 -84.07 -0.57 -0.15 16 14 C -0.09 -0.11 9.35 -39.53 -0.37 -0.48 16 15 C -0.07 0.05 4.53 -104.55 -0.47 -0.42 16 16 C -0.08 0.11 2.84 36.01 0.10 0.21 16 17 O -0.52 0.05 12.88 -35.23 -0.45 -0.41 16 18 Si 0.70 -1.60 31.97 -169.99 -5.43 -7.03 16 19 C -0.16 0.36 8.38 -39.95 -0.33 0.02 16 20 C 0.12 -0.14 11.17 -16.68 -0.19 -0.32 16 21 N -0.27 -0.47 3.86 -10.54 -0.04 -0.51 16 22 N -0.31 -0.72 12.57 30.75 0.39 -0.33 16 23 C 0.12 0.04 11.44 -17.14 -0.20 -0.15 16 24 C -0.14 0.21 7.29 -25.92 -0.19 0.03 16 25 C -0.11 -0.07 8.61 -39.58 -0.34 -0.41 16 26 C -0.12 -0.10 10.05 -39.59 -0.40 -0.50 16 27 C -0.12 -0.11 10.05 -39.58 -0.40 -0.51 16 28 C -0.12 -0.12 9.70 -39.58 -0.38 -0.50 16 29 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 30 H 0.07 -0.10 8.09 -51.93 -0.42 -0.52 16 31 H 0.07 -0.15 5.99 -51.93 -0.31 -0.46 16 32 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 33 H 0.09 -0.07 6.31 -51.93 -0.33 -0.40 16 34 H 0.40 -1.23 7.62 -40.82 -0.31 -1.54 16 35 H 0.17 0.25 7.01 -52.48 -0.37 -0.12 16 36 H 0.13 -0.22 7.71 -51.93 -0.40 -0.62 16 37 H 0.37 -1.39 8.08 45.56 0.37 -1.02 16 38 H -0.25 -0.24 7.11 56.52 0.40 0.17 16 39 H -0.25 0.31 7.05 56.52 0.40 0.71 16 40 H 0.16 -0.77 7.26 -52.49 -0.38 -1.16 16 41 H 0.18 -0.68 8.06 -52.48 -0.42 -1.10 16 42 H 0.20 -0.77 7.46 -52.48 -0.39 -1.16 16 43 H 0.10 -0.14 7.72 -51.93 -0.40 -0.54 16 44 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 45 H 0.12 -0.10 6.66 -52.48 -0.35 -0.45 16 46 H 0.12 -0.09 8.06 -52.48 -0.42 -0.51 16 47 H 0.12 -0.08 8.06 -52.49 -0.42 -0.50 16 48 H 0.12 -0.06 8.06 -52.49 -0.42 -0.48 16 LS Contribution 395.76 15.07 5.96 5.96 Total: 0.00 -9.79 395.76 -12.04 -21.83 By element: Atomic # 1 Polarization: -5.87 SS G_CDS: -6.14 Total: -12.01 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -6.11 Total: -4.41 kcal Atomic # 7 Polarization: -0.89 SS G_CDS: 0.06 Total: -0.83 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: -0.37 Total: -3.51 kcal Atomic # 14 Polarization: -1.60 SS G_CDS: -5.43 Total: -7.03 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -9.79 -12.04 -21.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_11618758.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.125 kcal (2) G-P(sol) polarization free energy of solvation -9.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds