Wall clock time and date at job start Tue Mar 9 2021 13:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38221 * 120.00031 * 2 1 4 4 C 1.50699 * 119.99793 * 359.97438 * 3 2 1 5 5 H 1.09005 * 112.85135 * 10.92776 * 4 3 2 6 6 C 1.53786 * 113.68833 * 142.19418 * 4 3 2 7 7 C 1.53779 * 87.07768 * 139.99298 * 6 4 3 8 8 H 1.09011 * 113.68944 * 220.00607 * 7 6 4 9 9 N 1.46506 * 113.61715 * 89.11945 * 7 6 4 10 10 C 1.34777 * 120.00264 * 107.49505 * 9 7 6 11 11 O 1.21691 * 119.99781 * 0.28326 * 10 9 7 12 12 C 1.46426 * 119.99830 * 179.97438 * 10 9 7 13 13 C 1.34807 * 119.99543 * 180.02562 * 12 10 9 14 14 C 1.47216 * 119.99573 * 180.02562 * 13 12 10 15 15 C 1.39828 * 120.16819 * 359.72831 * 14 13 12 16 16 C 1.37894 * 119.82231 * 179.72370 * 15 14 13 17 17 C 1.38406 * 120.17088 * 0.57029 * 16 15 14 18 18 C 1.50697 * 119.82559 * 179.69842 * 17 16 15 19 19 O 1.42903 * 109.47543 * 244.97766 * 18 17 16 20 20 Si 1.86298 * 109.47457 * 4.98384 * 18 17 16 21 21 C 1.38399 * 120.34266 * 359.68590 * 17 16 15 22 22 C 1.37889 * 120.17412 * 0.03322 * 21 17 16 23 23 C 1.53781 * 87.08570 * 334.56786 * 7 6 4 24 24 C 1.38254 * 120.00062 * 179.72559 * 3 2 1 25 25 C 1.38217 * 120.00018 * 0.27309 * 24 3 2 26 26 C 1.38257 * 119.99672 * 359.95451 * 25 24 3 27 27 C 1.38209 * 120.00285 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.46929 * 90.00374 * 1 2 3 29 29 H 1.09002 * 109.47113 * 210.00122 * 1 2 3 30 30 H 1.08996 * 109.47161 * 330.00223 * 1 2 3 31 31 H 1.08994 * 113.61412 * 25.44552 * 6 4 3 32 32 H 1.09002 * 113.61222 * 254.54156 * 6 4 3 33 33 H 0.96999 * 119.99689 * 287.50112 * 9 7 6 34 34 H 1.07999 * 120.00128 * 0.02562 * 12 10 9 35 35 H 1.07999 * 120.00329 * 0.02562 * 13 12 10 36 36 H 1.08001 * 120.09261 * 359.97438 * 15 14 13 37 37 H 1.08001 * 119.91750 * 180.27450 * 16 15 14 38 38 H 1.09008 * 109.46689 * 124.98338 * 18 17 16 39 39 H 0.96698 * 114.00296 * 179.97438 * 19 18 17 40 40 H 1.48503 * 109.99996 * 178.67775 * 20 18 17 41 41 H 1.48497 * 109.99996 * 299.99753 * 20 18 17 42 42 H 1.08006 * 119.91163 * 180.02562 * 21 17 16 43 43 H 1.07996 * 120.09053 * 179.97438 * 22 21 17 44 44 H 1.08995 * 113.61375 * 139.98221 * 23 7 6 45 45 H 1.09006 * 113.60884 * 270.80413 * 23 7 6 46 46 H 1.07995 * 120.00017 * 180.25009 * 24 3 2 47 47 H 1.07996 * 119.99883 * 179.97438 * 25 24 3 48 48 H 1.08000 * 119.99799 * 180.02562 * 26 25 24 49 49 H 1.08003 * 120.00027 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1970 0.0000 4 6 1.4445 2.5021 -0.0006 5 1 0.3787 2.3756 0.1895 6 6 2.0989 3.5937 0.8627 7 6 1.7280 4.5867 -0.2515 8 1 2.5021 5.3270 -0.4538 9 7 0.3996 5.1826 -0.0883 10 6 0.2808 6.4724 0.2843 11 8 1.2769 7.1434 0.4802 12 6 -1.0469 7.0681 0.4468 13 6 -1.1657 8.3584 0.8190 14 6 -2.5005 8.9571 0.9830 15 6 -3.6474 8.1925 0.7480 16 6 -4.8942 8.7589 0.9093 17 6 -5.0121 10.0840 1.2911 18 6 -6.3785 10.6971 1.4584 19 8 -6.5619 11.7256 0.4834 20 14 -7.6805 9.3845 1.2290 21 6 -3.8816 10.8488 1.5203 22 6 -2.6279 10.2952 1.3689 23 6 1.7521 3.3905 -1.2176 24 6 3.5806 1.1970 0.0057 25 6 4.2717 0.0001 0.0058 26 6 3.5804 -1.1973 0.0010 27 6 2.1983 -1.1973 -0.0043 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 3.1733 3.4631 0.9913 32 1 1.5783 3.7776 1.8025 33 1 -0.3943 4.6489 -0.2484 34 1 -1.9309 6.4739 0.2685 35 1 -0.2817 8.9527 0.9969 36 1 -3.5570 7.1598 0.4450 37 1 -5.7811 8.1684 0.7326 38 1 -6.4652 11.1241 2.4576 39 1 -7.4220 12.1648 0.5320 40 1 -9.0315 9.9698 1.4230 41 1 -7.5729 8.7945 -0.1295 42 1 -3.9817 11.8821 1.8184 43 1 -1.7467 10.8933 1.5477 44 1 0.9516 3.4103 -1.9571 45 1 2.7315 3.2052 -1.6587 46 1 4.1206 2.1323 0.0098 47 1 5.3517 0.0001 0.0098 48 1 4.1204 -2.1326 0.0014 49 1 1.6583 -2.1326 -0.0076 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9744652_12360594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:46 Heat of formation + Delta-G solvation = 26.552673 kcal Electronic energy + Delta-G solvation = -28357.137898 eV Core-core repulsion = 24409.428556 eV Total energy + Delta-G solvation = -3947.709342 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.167 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.64153 -40.70832 -40.23541 -38.77041 -37.88118 -35.14745 -34.52655 -33.73755 -32.27537 -31.75005 -31.15716 -27.96790 -27.33580 -26.75367 -26.06673 -24.27101 -23.93369 -22.91612 -22.00407 -21.84622 -20.46853 -20.02163 -18.72554 -18.59629 -17.72884 -17.36813 -17.00854 -16.71345 -16.52344 -16.14989 -15.98347 -15.74300 -15.49681 -15.23823 -15.00894 -14.93529 -14.75997 -14.44345 -14.26422 -14.05879 -13.99901 -13.88581 -13.63368 -13.60180 -13.49100 -13.27396 -12.99656 -12.83373 -12.71427 -12.31943 -12.09233 -12.07896 -11.73682 -11.72245 -11.54758 -11.30555 -11.18049 -10.90001 -10.56076 -10.05791 -10.01092 -9.65242 -9.41969 -9.26038 -5.03886 -0.55013 0.36226 0.45109 0.50585 0.90823 1.20213 1.52435 1.88077 2.14373 2.29091 2.74766 2.81842 3.26653 3.43228 3.54198 3.65392 3.67957 3.72082 3.78149 3.85990 3.90499 3.97884 4.02707 4.10805 4.12862 4.15716 4.22013 4.24241 4.32419 4.37036 4.48891 4.57754 4.61422 4.68650 4.70509 4.76864 4.79035 4.83212 4.88344 4.92384 4.95276 4.98674 5.05803 5.11998 5.13569 5.17913 5.26126 5.36258 5.45592 5.56262 5.58683 5.64442 5.66114 5.78706 5.84969 6.13720 6.35599 6.51860 7.27000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.083 4.083 3 C -0.072 4.072 4 C -0.077 4.077 5 H 0.101 0.899 6 C -0.144 4.144 7 C 0.119 3.881 8 H 0.105 0.895 9 N -0.709 5.709 10 C 0.551 3.449 11 O -0.541 6.541 12 C -0.216 4.216 13 C -0.013 4.013 14 C -0.074 4.074 15 C -0.095 4.095 16 C -0.117 4.117 17 C -0.060 4.060 18 C -0.079 4.079 19 O -0.535 6.535 20 Si 0.684 3.316 21 C -0.094 4.094 22 C -0.092 4.092 23 C -0.134 4.134 24 C -0.113 4.113 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.119 4.119 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.402 0.598 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.078 0.922 39 H 0.381 0.619 40 H -0.261 1.261 41 H -0.255 1.255 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -2.828 1.633 4.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.083 4.083 3 C -0.072 4.072 4 C -0.095 4.095 5 H 0.119 0.881 6 C -0.182 4.182 7 C 0.014 3.986 8 H 0.123 0.877 9 N -0.360 5.360 10 C 0.341 3.659 11 O -0.420 6.420 12 C -0.237 4.237 13 C -0.032 4.032 14 C -0.074 4.074 15 C -0.112 4.112 16 C -0.135 4.135 17 C -0.061 4.061 18 C -0.189 4.189 19 O -0.343 6.343 20 Si 0.585 3.415 21 C -0.112 4.112 22 C -0.110 4.110 23 C -0.172 4.172 24 C -0.131 4.131 25 C -0.141 4.141 26 C -0.138 4.138 27 C -0.137 4.137 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.236 0.764 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.096 0.904 39 H 0.229 0.771 40 H -0.186 1.186 41 H -0.179 1.179 42 H 0.147 0.853 43 H 0.150 0.850 44 H 0.095 0.905 45 H 0.116 0.884 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.127 -2.798 1.138 4.348 hybrid contribution -0.696 0.695 -0.450 1.082 sum -3.824 -2.103 0.688 4.418 Atomic orbital electron populations 1.20871 0.91354 1.02855 1.02428 1.19786 0.96008 0.92660 0.99868 1.19510 0.93463 0.93752 1.00490 1.21685 0.99733 0.90839 0.97289 0.88060 1.23566 1.01884 0.94683 0.98098 1.21850 0.85691 0.94664 0.96419 0.87663 1.45545 1.08497 1.11810 1.70141 1.18338 0.89682 0.81480 0.76449 1.90835 1.39327 1.61331 1.50484 1.22867 0.96398 0.97059 1.07350 1.22413 0.95893 0.94503 0.90428 1.19058 0.92570 0.94255 1.01529 1.21324 0.91365 0.99930 0.98629 1.20933 0.97761 0.94649 1.00154 1.19421 0.93811 0.93676 0.99147 1.24850 1.01555 0.98110 0.94385 1.86593 1.40044 1.51183 1.56450 0.95035 0.76552 0.83424 0.86482 1.20974 0.91407 0.99917 0.98908 1.21442 0.97913 0.94011 0.97595 1.23408 1.03540 0.94036 0.96264 1.21000 0.93612 0.98181 1.00323 1.21150 0.99972 0.92509 1.00493 1.21165 0.94346 0.98194 1.00095 1.21054 0.94349 0.97500 1.00840 0.91073 0.91499 0.91240 0.88689 0.90734 0.76377 0.85151 0.84434 0.84988 0.85219 0.90390 0.77121 1.18578 1.17941 0.85314 0.84996 0.90549 0.88397 0.85957 0.86065 0.86098 0.86112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.16 9.53 36.00 0.34 0.50 16 2 C -0.08 -0.06 5.88 -104.62 -0.62 -0.67 16 3 C -0.07 -0.04 5.29 -104.62 -0.55 -0.59 16 4 C -0.08 0.09 3.57 -90.96 -0.32 -0.23 16 5 H 0.10 -0.22 5.75 -51.93 -0.30 -0.52 16 6 C -0.14 0.07 7.26 -25.92 -0.19 -0.11 16 7 C 0.12 -0.03 4.33 -67.12 -0.29 -0.32 16 8 H 0.11 0.17 7.46 -51.92 -0.39 -0.22 16 9 N -0.71 0.47 5.26 -54.40 -0.29 0.18 16 10 C 0.55 1.10 7.74 -12.96 -0.10 0.99 16 11 O -0.54 -3.30 15.83 5.20 0.08 -3.22 16 12 C -0.22 0.05 9.41 -37.50 -0.35 -0.31 16 13 C -0.01 -0.01 9.46 -37.15 -0.35 -0.36 16 14 C -0.07 -0.03 5.87 -105.06 -0.62 -0.65 16 15 C -0.09 0.05 9.41 -39.11 -0.37 -0.32 16 16 C -0.12 0.02 8.65 -39.65 -0.34 -0.32 16 17 C -0.06 -0.04 5.39 -104.50 -0.56 -0.60 16 18 C -0.08 0.04 2.79 36.00 0.10 0.14 16 19 O -0.54 -0.46 12.81 -35.23 -0.45 -0.91 16 20 Si 0.68 -0.98 29.83 -169.99 -5.07 -6.05 16 21 C -0.09 -0.07 9.66 -39.65 -0.38 -0.45 16 22 C -0.09 -0.04 9.80 -39.11 -0.38 -0.42 16 23 C -0.13 0.20 7.29 -25.92 -0.19 0.01 16 24 C -0.11 -0.07 8.62 -39.58 -0.34 -0.41 16 25 C -0.12 -0.10 10.05 -39.58 -0.40 -0.50 16 26 C -0.12 -0.11 10.05 -39.58 -0.40 -0.51 16 27 C -0.12 -0.11 9.70 -39.59 -0.38 -0.49 16 28 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.07 -0.11 8.09 -51.93 -0.42 -0.53 16 30 H 0.07 -0.15 5.99 -51.93 -0.31 -0.46 16 31 H 0.09 -0.06 6.32 -51.93 -0.33 -0.39 16 32 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.40 -1.36 8.68 -40.82 -0.35 -1.72 16 34 H 0.13 -0.40 6.07 -52.49 -0.32 -0.72 16 35 H 0.14 0.16 7.52 -52.49 -0.39 -0.24 16 36 H 0.13 -0.38 6.17 -52.49 -0.32 -0.71 16 37 H 0.13 -0.24 4.84 -52.49 -0.25 -0.50 16 38 H 0.08 -0.17 7.96 -51.92 -0.41 -0.59 16 39 H 0.38 -1.18 8.74 45.56 0.40 -0.78 16 40 H -0.26 -0.17 7.11 56.52 0.40 0.23 16 41 H -0.25 -0.40 7.04 56.52 0.40 -0.01 16 42 H 0.13 -0.02 8.06 -52.48 -0.42 -0.44 16 43 H 0.13 -0.16 8.06 -52.49 -0.42 -0.58 16 44 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 45 H 0.10 -0.13 7.73 -51.93 -0.40 -0.53 16 46 H 0.12 -0.09 6.67 -52.49 -0.35 -0.44 16 47 H 0.12 -0.09 8.06 -52.49 -0.42 -0.51 16 48 H 0.12 -0.08 8.06 -52.49 -0.42 -0.51 16 49 H 0.12 -0.07 8.06 -52.48 -0.42 -0.49 16 LS Contribution 400.32 15.07 6.03 6.03 Total: 0.00 -8.62 400.32 -13.13 -21.76 By element: Atomic # 1 Polarization: -5.44 SS G_CDS: -6.74 Total: -12.18 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -6.70 Total: -5.62 kcal Atomic # 7 Polarization: 0.47 SS G_CDS: -0.29 Total: 0.18 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -0.37 Total: -4.12 kcal Atomic # 14 Polarization: -0.98 SS G_CDS: -5.07 Total: -6.05 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -8.62 -13.13 -21.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_12360594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.311 kcal (2) G-P(sol) polarization free energy of solvation -8.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds