Wall clock time and date at job start Tue Mar 9 2021 13:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38221 * 120.00031 * 2 1 4 4 C 1.50699 * 119.99793 * 359.97438 * 3 2 1 5 5 H 1.09005 * 112.85135 * 10.92776 * 4 3 2 6 6 C 1.53786 * 113.68833 * 142.19418 * 4 3 2 7 7 C 1.53779 * 87.07768 * 139.99298 * 6 4 3 8 8 H 1.09011 * 113.68944 * 220.00607 * 7 6 4 9 9 N 1.46506 * 113.61715 * 89.11945 * 7 6 4 10 10 C 1.34777 * 120.00264 * 107.49505 * 9 7 6 11 11 O 1.21691 * 119.99781 * 0.28326 * 10 9 7 12 12 C 1.46426 * 119.99830 * 179.97438 * 10 9 7 13 13 C 1.34807 * 119.99543 * 180.02562 * 12 10 9 14 14 C 1.47216 * 119.99573 * 180.02562 * 13 12 10 15 15 C 1.39828 * 120.16819 * 359.72831 * 14 13 12 16 16 C 1.37894 * 119.82231 * 179.72370 * 15 14 13 17 17 C 1.38406 * 120.17088 * 0.57029 * 16 15 14 18 18 C 1.50697 * 119.82559 * 179.69842 * 17 16 15 19 19 O 1.42903 * 109.47543 * 244.97766 * 18 17 16 20 20 Si 1.86298 * 109.47457 * 4.98384 * 18 17 16 21 21 C 1.38399 * 120.34266 * 359.68590 * 17 16 15 22 22 C 1.37889 * 120.17412 * 0.03322 * 21 17 16 23 23 C 1.53781 * 87.08570 * 334.56786 * 7 6 4 24 24 C 1.38254 * 120.00062 * 179.72559 * 3 2 1 25 25 C 1.38217 * 120.00018 * 0.27309 * 24 3 2 26 26 C 1.38257 * 119.99672 * 359.95451 * 25 24 3 27 27 C 1.38209 * 120.00285 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.46929 * 90.00374 * 1 2 3 29 29 H 1.09002 * 109.47113 * 210.00122 * 1 2 3 30 30 H 1.08996 * 109.47161 * 330.00223 * 1 2 3 31 31 H 1.08994 * 113.61412 * 25.44552 * 6 4 3 32 32 H 1.09002 * 113.61222 * 254.54156 * 6 4 3 33 33 H 0.96999 * 119.99689 * 287.50112 * 9 7 6 34 34 H 1.07999 * 120.00128 * 0.02562 * 12 10 9 35 35 H 1.07999 * 120.00329 * 0.02562 * 13 12 10 36 36 H 1.08001 * 120.09261 * 359.97438 * 15 14 13 37 37 H 1.08001 * 119.91750 * 180.27450 * 16 15 14 38 38 H 1.09008 * 109.46689 * 124.98338 * 18 17 16 39 39 H 0.96698 * 114.00296 * 179.97438 * 19 18 17 40 40 H 1.48503 * 109.99996 * 178.67775 * 20 18 17 41 41 H 1.48497 * 109.99996 * 299.99753 * 20 18 17 42 42 H 1.08006 * 119.91163 * 180.02562 * 21 17 16 43 43 H 1.07996 * 120.09053 * 179.97438 * 22 21 17 44 44 H 1.08995 * 113.61375 * 139.98221 * 23 7 6 45 45 H 1.09006 * 113.60884 * 270.80413 * 23 7 6 46 46 H 1.07995 * 120.00017 * 180.25009 * 24 3 2 47 47 H 1.07996 * 119.99883 * 179.97438 * 25 24 3 48 48 H 1.08000 * 119.99799 * 180.02562 * 26 25 24 49 49 H 1.08003 * 120.00027 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1970 0.0000 4 6 1.4445 2.5021 -0.0006 5 1 0.3787 2.3756 0.1895 6 6 2.0989 3.5937 0.8627 7 6 1.7280 4.5867 -0.2515 8 1 2.5021 5.3270 -0.4538 9 7 0.3996 5.1826 -0.0883 10 6 0.2808 6.4724 0.2843 11 8 1.2769 7.1434 0.4802 12 6 -1.0469 7.0681 0.4468 13 6 -1.1657 8.3584 0.8190 14 6 -2.5005 8.9571 0.9830 15 6 -3.6474 8.1925 0.7480 16 6 -4.8942 8.7589 0.9093 17 6 -5.0121 10.0840 1.2911 18 6 -6.3785 10.6971 1.4584 19 8 -6.5619 11.7256 0.4834 20 14 -7.6805 9.3845 1.2290 21 6 -3.8816 10.8488 1.5203 22 6 -2.6279 10.2952 1.3689 23 6 1.7521 3.3905 -1.2176 24 6 3.5806 1.1970 0.0057 25 6 4.2717 0.0001 0.0058 26 6 3.5804 -1.1973 0.0010 27 6 2.1983 -1.1973 -0.0043 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 3.1733 3.4631 0.9913 32 1 1.5783 3.7776 1.8025 33 1 -0.3943 4.6489 -0.2484 34 1 -1.9309 6.4739 0.2685 35 1 -0.2817 8.9527 0.9969 36 1 -3.5570 7.1598 0.4450 37 1 -5.7811 8.1684 0.7326 38 1 -6.4652 11.1241 2.4576 39 1 -7.4220 12.1648 0.5320 40 1 -9.0315 9.9698 1.4230 41 1 -7.5729 8.7945 -0.1295 42 1 -3.9817 11.8821 1.8184 43 1 -1.7467 10.8933 1.5477 44 1 0.9516 3.4103 -1.9571 45 1 2.7315 3.2052 -1.6587 46 1 4.1206 2.1323 0.0098 47 1 5.3517 0.0001 0.0098 48 1 4.1204 -2.1326 0.0014 49 1 1.6583 -2.1326 -0.0076 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_12360594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:45 Heat of formation + Delta-G solvation = 31.622145 kcal Electronic energy + Delta-G solvation = -28356.918069 eV Core-core repulsion = 24409.428556 eV Total energy + Delta-G solvation = -3947.489513 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.167 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.65019 -40.69055 -40.27987 -38.79921 -37.86010 -35.16374 -34.59809 -33.69445 -32.23564 -31.74639 -31.13070 -27.90090 -27.30784 -26.69805 -26.03550 -24.24709 -23.90831 -22.90556 -22.00665 -21.83862 -20.49364 -19.99010 -18.74230 -18.56487 -17.70362 -17.34860 -17.03177 -16.68166 -16.49076 -16.12873 -16.00933 -15.80187 -15.48984 -15.24945 -14.99925 -14.90877 -14.72990 -14.38799 -14.25645 -14.03786 -13.95543 -13.88108 -13.59805 -13.56940 -13.42094 -13.15664 -13.01090 -12.81031 -12.68864 -12.30030 -12.05263 -12.03564 -11.72221 -11.69495 -11.49290 -11.31860 -11.15849 -11.07618 -10.49626 -10.11874 -9.97405 -9.66250 -9.41093 -9.23500 -4.92746 -0.54792 0.40244 0.44429 0.49349 0.88258 1.29592 1.60355 1.94428 2.13198 2.21954 2.77808 2.81442 3.37825 3.48415 3.56452 3.70657 3.73098 3.77092 3.85097 3.94520 3.95869 4.03232 4.07870 4.16252 4.19499 4.22339 4.26092 4.32775 4.39631 4.43685 4.55929 4.60443 4.66159 4.75943 4.82500 4.83556 4.85483 4.88111 4.95850 4.97541 5.01328 5.02548 5.09966 5.17163 5.17846 5.20816 5.35425 5.39332 5.48807 5.55462 5.60296 5.64895 5.65687 5.80390 5.90028 6.15724 6.54202 6.56402 7.21742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.081 4.081 4 C -0.068 4.068 5 H 0.117 0.883 6 C -0.143 4.143 7 C 0.116 3.884 8 H 0.082 0.918 9 N -0.694 5.694 10 C 0.545 3.455 11 O -0.592 6.592 12 C -0.208 4.208 13 C -0.019 4.019 14 C -0.082 4.082 15 C -0.094 4.094 16 C -0.125 4.125 17 C -0.075 4.075 18 C -0.092 4.092 19 O -0.559 6.559 20 Si 0.768 3.232 21 C -0.108 4.108 22 C -0.103 4.103 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.138 4.138 26 C -0.133 4.133 27 C -0.134 4.134 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.418 0.582 34 H 0.165 0.835 35 H 0.123 0.877 36 H 0.159 0.841 37 H 0.146 0.854 38 H 0.095 0.905 39 H 0.395 0.605 40 H -0.289 1.289 41 H -0.295 1.295 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.131 0.869 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.204 -3.970 1.546 6.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.081 4.081 4 C -0.085 4.085 5 H 0.135 0.865 6 C -0.181 4.181 7 C 0.010 3.990 8 H 0.101 0.899 9 N -0.344 5.344 10 C 0.335 3.665 11 O -0.474 6.474 12 C -0.228 4.228 13 C -0.039 4.039 14 C -0.082 4.082 15 C -0.112 4.112 16 C -0.143 4.143 17 C -0.075 4.075 18 C -0.200 4.200 19 O -0.369 6.369 20 Si 0.673 3.327 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.162 4.162 24 C -0.142 4.142 25 C -0.156 4.156 26 C -0.151 4.151 27 C -0.152 4.152 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.256 0.744 34 H 0.183 0.817 35 H 0.141 0.859 36 H 0.177 0.823 37 H 0.163 0.837 38 H 0.113 0.887 39 H 0.245 0.755 40 H -0.216 1.216 41 H -0.222 1.222 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.148 0.852 47 H 0.149 0.851 48 H 0.149 0.851 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.600 -3.963 1.061 6.164 hybrid contribution -0.219 1.055 -0.446 1.166 sum -4.818 -2.909 0.615 5.662 Atomic orbital electron populations 1.20911 0.89896 1.03555 1.03059 1.20100 0.97258 0.92593 0.99490 1.19710 0.93543 0.94436 1.00380 1.21673 1.00228 0.89750 0.96897 0.86536 1.23541 1.01863 0.94948 0.97772 1.21817 0.85441 0.94423 0.97349 0.89939 1.45432 1.09088 1.11174 1.68740 1.18754 0.89923 0.81933 0.75858 1.90815 1.41045 1.62625 1.52916 1.22994 0.96291 0.96938 1.06592 1.22356 0.95624 0.94909 0.91040 1.19119 0.92743 0.94370 1.01972 1.21636 0.90746 1.01075 0.97699 1.21172 0.98587 0.94564 0.99929 1.19693 0.94301 0.94281 0.99248 1.25107 1.01427 0.98440 0.95013 1.86547 1.41484 1.51817 1.57076 0.94109 0.73823 0.81329 0.83431 1.21101 0.91717 1.00263 0.99549 1.21622 0.98220 0.94482 0.97746 1.23341 1.03943 0.92709 0.96201 1.21205 0.94096 0.98524 1.00373 1.21379 1.00703 0.92724 1.00779 1.21401 0.94735 0.98749 1.00213 1.21310 0.94584 0.98260 1.01056 0.90372 0.91183 0.90196 0.88942 0.91356 0.74404 0.81745 0.85935 0.82309 0.83691 0.88732 0.75456 1.21639 1.22224 0.85124 0.84371 0.89324 0.88598 0.85239 0.85126 0.85078 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.48 9.53 71.23 0.68 1.16 16 2 C -0.09 -0.08 5.88 -19.87 -0.12 -0.20 16 3 C -0.08 -0.05 5.29 -19.86 -0.11 -0.15 16 4 C -0.07 0.23 3.57 -11.01 -0.04 0.19 16 5 H 0.12 -0.75 5.75 -2.38 -0.01 -0.76 16 6 C -0.14 0.13 7.26 31.12 0.23 0.35 16 7 C 0.12 -0.03 4.33 45.52 0.20 0.17 16 8 H 0.08 0.40 7.46 -2.38 -0.02 0.38 16 9 N -0.69 1.35 5.26 -444.24 -2.34 -0.99 16 10 C 0.54 2.29 7.74 86.37 0.67 2.96 16 11 O -0.59 -8.24 15.83 -4.32 -0.07 -8.31 16 12 C -0.21 0.24 9.41 23.62 0.22 0.47 16 13 C -0.02 -0.03 9.46 23.84 0.23 0.20 16 14 C -0.08 -0.06 5.87 -20.15 -0.12 -0.18 16 15 C -0.09 0.21 9.41 22.57 0.21 0.42 16 16 C -0.13 0.15 8.65 22.23 0.19 0.34 16 17 C -0.08 -0.09 5.39 -19.79 -0.11 -0.20 16 18 C -0.09 0.13 2.79 71.23 0.20 0.33 16 19 O -0.56 -1.00 12.81 -148.98 -1.91 -2.90 16 20 Si 0.77 -2.62 29.83 68.60 2.05 -0.57 16 21 C -0.11 -0.22 9.66 22.23 0.21 -0.01 16 22 C -0.10 -0.16 9.80 22.57 0.22 0.06 16 23 C -0.12 0.46 7.29 31.12 0.23 0.69 16 24 C -0.12 -0.20 8.62 22.27 0.19 -0.01 16 25 C -0.14 -0.29 10.05 22.27 0.22 -0.07 16 26 C -0.13 -0.28 10.05 22.27 0.22 -0.05 16 27 C -0.13 -0.23 9.70 22.27 0.22 -0.02 16 28 H 0.08 -0.41 8.14 -2.38 -0.02 -0.43 16 29 H 0.07 -0.32 8.09 -2.39 -0.02 -0.34 16 30 H 0.08 -0.51 5.99 -2.39 -0.01 -0.52 16 31 H 0.09 -0.04 6.32 -2.39 -0.02 -0.05 16 32 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.42 -3.67 8.68 -92.71 -0.80 -4.47 16 34 H 0.17 -1.46 6.07 -2.91 -0.02 -1.47 16 35 H 0.12 0.52 7.52 -2.91 -0.02 0.49 16 36 H 0.16 -1.36 6.17 -2.91 -0.02 -1.38 16 37 H 0.15 -0.73 4.84 -2.91 -0.01 -0.75 16 38 H 0.09 -0.48 7.96 -2.38 -0.02 -0.50 16 39 H 0.39 -2.44 8.74 -74.06 -0.65 -3.09 16 40 H -0.29 -0.34 7.11 99.48 0.71 0.37 16 41 H -0.29 -0.94 7.04 99.48 0.70 -0.24 16 42 H 0.13 0.08 8.06 -2.91 -0.02 0.06 16 43 H 0.14 -0.13 8.06 -2.91 -0.02 -0.15 16 44 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 45 H 0.10 -0.28 7.73 -2.38 -0.02 -0.30 16 46 H 0.13 -0.11 6.67 -2.91 -0.02 -0.13 16 47 H 0.13 -0.12 8.06 -2.91 -0.02 -0.14 16 48 H 0.13 -0.14 8.06 -2.91 -0.02 -0.17 16 49 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 Total: 0.00 -21.78 400.32 1.16 -20.63 By element: Atomic # 1 Polarization: -13.87 SS G_CDS: -0.43 Total: -14.30 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 3.85 Total: 6.45 kcal Atomic # 7 Polarization: 1.35 SS G_CDS: -2.34 Total: -0.99 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -1.98 Total: -11.21 kcal Atomic # 14 Polarization: -2.62 SS G_CDS: 2.05 Total: -0.57 kcal Total: -21.78 1.16 -20.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_12360594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.248 kcal (2) G-P(sol) polarization free energy of solvation -21.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds