Wall clock time and date at job start Tue Mar 9 2021 13:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38216 * 119.99562 * 2 1 4 4 C 1.50697 * 120.00005 * 0.02562 * 3 2 1 5 5 H 1.08999 * 112.85249 * 348.80454 * 4 3 2 6 6 C 1.53788 * 113.61240 * 119.99790 * 4 3 2 7 7 C 1.53786 * 87.07735 * 140.06414 * 6 4 3 8 8 H 1.09005 * 113.61202 * 219.93270 * 7 6 4 9 9 N 1.46498 * 113.61297 * 89.12066 * 7 6 4 10 10 C 1.34780 * 120.00033 * 155.00096 * 9 7 6 11 11 O 1.21627 * 119.99693 * 359.97438 * 10 9 7 12 12 C 1.47292 * 119.99888 * 180.02562 * 10 9 7 13 13 C 1.40365 * 120.04245 * 179.97438 * 12 10 9 14 14 O 1.35679 * 120.14160 * 0.03823 * 13 12 10 15 15 C 1.38323 * 119.72561 * 180.02562 * 13 12 10 16 16 C 1.39567 * 119.80897 * 359.97438 * 15 13 12 17 17 C 1.47569 * 119.95512 * 180.02562 * 16 15 13 18 18 C 1.36109 * 125.94733 * 180.02562 * 17 16 15 19 19 C 1.40795 * 106.73337 * 180.24168 * 18 17 16 20 20 C 1.34832 * 107.04964 * 359.60553 * 19 18 17 21 21 C 1.50703 * 125.65079 * 180.12168 * 20 19 18 22 22 O 1.42900 * 109.47253 * 65.29995 * 21 20 19 23 23 Si 1.86300 * 109.46995 * 185.29830 * 21 20 19 24 24 O 1.34226 * 108.69723 * 0.39803 * 20 19 18 25 25 C 1.39960 * 120.09280 * 0.27109 * 16 15 13 26 26 C 1.36391 * 120.27668 * 359.45024 * 25 16 15 27 27 C 1.53781 * 113.68891 * 217.53347 * 4 3 2 28 28 C 1.38252 * 119.99627 * 180.27477 * 3 2 1 29 29 C 1.38217 * 120.00172 * 359.49737 * 28 3 2 30 30 C 1.38253 * 119.99748 * 0.50365 * 29 28 3 31 31 C 1.38217 * 120.00024 * 359.75028 * 30 29 28 32 32 H 1.08994 * 109.47646 * 90.00160 * 1 2 3 33 33 H 1.09002 * 109.46543 * 209.99844 * 1 2 3 34 34 H 1.08999 * 109.47285 * 329.99167 * 1 2 3 35 35 H 1.08996 * 113.61345 * 25.51914 * 6 4 3 36 36 H 1.09000 * 113.69148 * 254.62208 * 6 4 3 37 37 H 0.96996 * 119.99933 * 334.99181 * 9 7 6 38 38 H 0.96700 * 113.99990 * 269.97952 * 14 13 12 39 39 H 1.07993 * 120.09940 * 180.02562 * 15 13 12 40 40 H 1.08002 * 126.62860 * 359.97242 * 18 17 16 41 41 H 1.08005 * 126.47533 * 179.75634 * 19 18 17 42 42 H 1.08996 * 109.47408 * 305.29452 * 21 20 19 43 43 H 0.96696 * 113.99786 * 59.99703 * 22 21 20 44 44 H 1.48499 * 110.00150 * 179.97438 * 23 21 20 45 45 H 1.48502 * 110.00150 * 301.32048 * 23 21 20 46 46 H 1.08005 * 119.86458 * 179.72366 * 25 16 15 47 47 H 1.07994 * 119.90906 * 180.27327 * 26 25 16 48 48 H 1.09006 * 113.61460 * 105.46580 * 27 4 3 49 49 H 1.08998 * 113.61700 * 334.55358 * 27 4 3 50 50 H 1.08005 * 119.99706 * 179.72165 * 28 3 2 51 51 H 1.08002 * 119.99837 * 180.22775 * 29 28 3 52 52 H 1.08000 * 119.99711 * 179.72216 * 30 29 28 53 53 H 1.08001 * 119.99741 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1970 0.0000 4 6 1.4444 2.5021 0.0006 5 1 0.3794 2.3760 -0.1940 6 6 1.7470 3.3875 1.2210 7 6 1.7268 4.5861 0.2576 8 1 2.5000 5.3259 0.4649 9 7 0.3991 5.1823 0.0905 10 6 0.2817 6.4730 -0.2795 11 8 1.2781 7.1428 -0.4742 12 6 -1.0531 7.0726 -0.4470 13 6 -1.1764 8.4169 -0.8318 14 8 -0.0675 9.1672 -1.0512 15 6 -2.4333 8.9735 -0.9866 16 6 -3.5694 8.1952 -0.7599 17 6 -4.9118 8.7856 -0.9246 18 6 -6.0963 8.1422 -0.7359 19 6 -7.1133 9.0774 -1.0067 20 6 -6.5074 10.2362 -1.3354 21 6 -7.2067 11.5199 -1.7019 22 8 -7.9284 12.0092 -0.5697 23 14 -5.9452 12.7857 -2.2286 24 8 -5.1782 10.0553 -1.2881 25 6 -3.4374 6.8571 -0.3715 26 6 -2.2000 6.3030 -0.2232 27 6 2.1022 3.5957 -0.8574 28 6 3.5805 1.1971 -0.0057 29 6 4.2717 0.0001 -0.0010 30 6 3.5805 -1.1972 -0.0010 31 6 2.1983 -1.1972 -0.0006 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3632 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5139 35 1 2.7248 3.2003 1.6646 36 1 0.9443 3.4063 1.9582 37 1 -0.3955 4.6482 0.2460 38 1 0.2571 9.6283 -0.2657 39 1 -2.5351 10.0069 -1.2828 40 1 -6.2301 7.1121 -0.4402 41 1 -8.1777 8.9008 -0.9578 42 1 -7.8999 11.3347 -2.5224 43 1 -7.3733 12.1962 0.1997 44 1 -6.6222 14.0561 -2.5932 45 1 -4.9751 13.0237 -1.1297 46 1 -4.3191 6.2595 -0.1927 47 1 -2.1050 5.2686 0.0725 48 1 1.5854 3.7819 -1.7989 49 1 3.1772 3.4655 -0.9819 50 1 4.1205 2.1324 -0.0103 51 1 5.3517 0.0002 -0.0017 52 1 4.1205 -2.1325 -0.0018 53 1 1.6584 -2.1326 -0.0010 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_12807986.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:08 Heat of formation + Delta-G solvation = -3.321262 kcal Electronic energy + Delta-G solvation = -36518.771521 eV Core-core repulsion = 31675.950083 eV Total energy + Delta-G solvation = -4842.821438 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.166 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.74029 -41.86894 -41.07341 -39.81450 -38.60749 -38.18716 -37.85628 -34.83891 -34.19962 -33.75187 -33.21872 -31.62398 -31.25150 -30.40242 -27.86222 -27.18174 -26.69595 -26.03334 -24.53180 -24.05881 -23.13813 -22.43498 -22.05659 -21.83154 -21.36735 -20.16034 -19.64303 -18.87606 -18.59701 -17.77371 -17.60538 -17.47632 -17.20974 -16.66622 -16.64413 -16.33939 -16.12861 -16.00856 -15.82862 -15.76395 -15.45813 -14.97182 -14.89894 -14.77293 -14.47165 -14.40599 -14.20746 -13.97036 -13.95017 -13.79539 -13.66997 -13.57033 -13.45013 -13.40686 -13.11297 -12.95956 -12.80237 -12.72971 -12.67286 -12.19612 -12.05273 -11.89634 -11.69798 -11.50339 -11.15363 -11.13061 -10.94339 -10.84569 -10.62761 -10.11820 -9.95086 -9.65927 -9.40076 -9.01475 -4.98916 -0.79382 0.14791 0.44677 0.49910 0.64358 1.12240 1.43250 1.44764 1.68977 1.87515 1.91441 2.00644 2.64043 2.81438 3.01852 3.21315 3.35935 3.47291 3.59859 3.64430 3.71632 3.75846 3.87071 3.94725 3.99452 4.01140 4.04833 4.08565 4.21188 4.22582 4.27005 4.37006 4.43330 4.45793 4.59700 4.61919 4.66811 4.70656 4.76945 4.78760 4.83493 4.84487 4.86990 4.91117 4.96182 5.02180 5.02995 5.07081 5.10810 5.16317 5.21358 5.22223 5.35311 5.43641 5.51816 5.54999 5.65373 5.65968 5.79881 5.96299 6.16167 6.31492 6.46921 6.69401 7.16461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.080 4.080 4 C -0.067 4.067 5 H 0.117 0.883 6 C -0.123 4.123 7 C 0.118 3.882 8 H 0.085 0.915 9 N -0.694 5.694 10 C 0.558 3.442 11 O -0.563 6.563 12 C -0.179 4.179 13 C 0.160 3.840 14 O -0.495 6.495 15 C -0.153 4.153 16 C 0.026 3.974 17 C 0.005 3.995 18 C -0.171 4.171 19 C -0.181 4.181 20 C -0.052 4.052 21 C -0.032 4.032 22 O -0.534 6.534 23 Si 0.760 3.240 24 O -0.177 6.177 25 C -0.109 4.109 26 C -0.051 4.051 27 C -0.144 4.144 28 C -0.124 4.124 29 C -0.138 4.138 30 C -0.133 4.133 31 C -0.135 4.135 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.415 0.585 38 H 0.408 0.592 39 H 0.137 0.863 40 H 0.183 0.817 41 H 0.167 0.833 42 H 0.157 0.843 43 H 0.390 0.610 44 H -0.280 1.280 45 H -0.295 1.295 46 H 0.170 0.830 47 H 0.173 0.827 48 H 0.065 0.935 49 H 0.093 0.907 50 H 0.130 0.870 51 H 0.130 0.870 52 H 0.131 0.869 53 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.600 -5.555 2.002 7.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.080 4.080 4 C -0.085 4.085 5 H 0.135 0.865 6 C -0.161 4.161 7 C 0.012 3.988 8 H 0.103 0.897 9 N -0.347 5.347 10 C 0.347 3.653 11 O -0.442 6.442 12 C -0.182 4.182 13 C 0.114 3.886 14 O -0.308 6.308 15 C -0.172 4.172 16 C 0.025 3.975 17 C -0.045 4.045 18 C -0.190 4.190 19 C -0.200 4.200 20 C -0.102 4.102 21 C -0.142 4.142 22 O -0.342 6.342 23 Si 0.664 3.336 24 O -0.075 6.075 25 C -0.127 4.127 26 C -0.069 4.069 27 C -0.183 4.183 28 C -0.142 4.142 29 C -0.156 4.156 30 C -0.151 4.151 31 C -0.153 4.153 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.253 0.747 38 H 0.268 0.732 39 H 0.155 0.845 40 H 0.200 0.800 41 H 0.185 0.815 42 H 0.174 0.826 43 H 0.239 0.761 44 H -0.207 1.207 45 H -0.222 1.222 46 H 0.188 0.812 47 H 0.190 0.810 48 H 0.084 0.916 49 H 0.111 0.889 50 H 0.148 0.852 51 H 0.148 0.852 52 H 0.148 0.852 53 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.860 -4.346 1.000 5.898 hybrid contribution -0.067 0.106 1.546 1.551 sum -3.927 -4.240 2.546 6.315 Atomic orbital electron populations 1.20904 0.89824 1.03770 1.02942 1.20104 0.97297 0.92548 0.99431 1.19709 0.93512 0.94428 1.00358 1.21653 1.00182 0.89730 0.96951 0.86545 1.23355 1.04160 0.92448 0.96136 1.21825 0.85120 0.94503 0.97328 0.89662 1.45429 1.09205 1.10772 1.69283 1.18239 0.88594 0.82130 0.76343 1.90826 1.39803 1.62369 1.51194 1.20501 0.94004 0.95407 1.08319 1.18498 0.86374 0.89467 0.94267 1.84732 1.42240 1.64670 1.39188 1.21567 0.90855 1.01438 1.03311 1.17959 0.87455 0.93943 0.98145 1.20589 0.94580 0.82679 1.06610 1.22250 0.89926 1.02398 1.04435 1.21842 1.01745 0.91963 1.04457 1.23152 0.80089 0.99684 1.07240 1.24440 1.02681 0.94539 0.92514 1.86639 1.37539 1.85394 1.24661 0.93625 0.76123 0.76740 0.87111 1.83937 1.25431 1.29814 1.68294 1.21059 0.99444 0.92532 0.99638 1.21170 0.89842 1.00718 0.95158 1.23551 1.01874 0.95054 0.97788 1.21210 0.94136 0.98501 1.00356 1.21375 1.00685 0.92749 1.00807 1.21399 0.94764 0.98731 1.00242 1.21315 0.94568 0.98301 1.01084 0.90682 0.91077 0.89894 0.88471 0.89020 0.74669 0.73202 0.84492 0.79993 0.81531 0.82561 0.76051 1.20672 1.22193 0.81211 0.80996 0.91591 0.88901 0.85222 0.85190 0.85153 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.59 9.33 71.24 0.66 1.25 16 2 C -0.09 -0.01 5.88 -19.87 -0.12 -0.13 16 3 C -0.08 0.01 5.29 -19.87 -0.11 -0.09 16 4 C -0.07 0.29 3.41 -11.01 -0.04 0.25 16 5 H 0.12 -0.89 6.07 -2.39 -0.01 -0.90 16 6 C -0.12 0.63 7.29 31.12 0.23 0.85 16 7 C 0.12 -0.15 4.32 45.52 0.20 0.05 16 8 H 0.09 0.30 7.46 -2.38 -0.02 0.29 16 9 N -0.69 1.76 5.21 -443.40 -2.31 -0.55 16 10 C 0.56 2.64 7.75 86.62 0.67 3.32 16 11 O -0.56 -7.68 14.74 16.88 0.25 -7.43 16 12 C -0.18 -0.28 5.89 -19.97 -0.12 -0.39 16 13 C 0.16 0.76 6.71 22.81 0.15 0.91 16 14 O -0.50 -3.70 11.56 -68.97 -0.80 -4.50 16 15 C -0.15 -0.43 9.65 22.61 0.22 -0.22 16 16 C 0.03 0.00 5.87 -20.08 -0.12 -0.12 16 17 C 0.00 0.00 7.02 24.24 0.17 0.17 16 18 C -0.17 0.40 10.26 22.40 0.23 0.63 16 19 C -0.18 0.17 10.78 22.11 0.24 0.41 16 20 C -0.05 -0.02 6.21 24.90 0.15 0.13 16 21 C -0.03 0.06 2.98 71.24 0.21 0.27 16 22 O -0.53 -0.20 12.88 -148.98 -1.92 -2.12 16 23 Si 0.76 -0.57 32.11 68.60 2.20 1.64 16 24 O -0.18 -0.50 8.79 -6.02 -0.05 -0.56 16 25 C -0.11 0.64 9.48 22.26 0.21 0.85 16 26 C -0.05 0.31 9.47 22.25 0.21 0.52 16 27 C -0.14 0.19 7.25 31.12 0.23 0.42 16 28 C -0.12 -0.13 8.63 22.27 0.19 0.06 16 29 C -0.14 -0.24 10.05 22.27 0.22 -0.02 16 30 C -0.13 -0.23 10.05 22.27 0.22 -0.01 16 31 C -0.13 -0.17 9.70 22.27 0.22 0.04 16 32 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.07 -0.40 8.09 -2.39 -0.02 -0.42 16 34 H 0.08 -0.67 6.34 -2.39 -0.02 -0.68 16 35 H 0.10 -0.41 7.73 -2.39 -0.02 -0.43 16 36 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 37 H 0.41 -3.98 6.71 -92.71 -0.62 -4.60 16 38 H 0.41 0.20 9.06 -74.06 -0.67 -0.47 16 39 H 0.14 0.41 7.89 -2.91 -0.02 0.38 16 40 H 0.18 -1.57 7.24 -2.91 -0.02 -1.59 16 41 H 0.17 -0.62 8.06 -2.91 -0.02 -0.64 16 42 H 0.16 -0.90 7.96 -2.39 -0.02 -0.92 16 43 H 0.39 -1.75 8.70 -74.06 -0.64 -2.40 16 44 H -0.28 -1.29 7.11 99.48 0.71 -0.59 16 45 H -0.30 -1.69 7.11 99.48 0.71 -0.98 16 46 H 0.17 -2.09 6.95 -2.91 -0.02 -2.11 16 47 H 0.17 -2.44 6.38 -2.91 -0.02 -2.46 16 48 H 0.07 0.05 8.14 -2.38 -0.02 0.03 16 49 H 0.09 -0.07 6.31 -2.39 -0.02 -0.09 16 50 H 0.13 -0.18 6.65 -2.91 -0.02 -0.20 16 51 H 0.13 -0.15 8.06 -2.91 -0.02 -0.17 16 52 H 0.13 -0.17 8.06 -2.91 -0.02 -0.19 16 53 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 Total: 0.00 -25.52 438.97 0.62 -24.90 By element: Atomic # 1 Polarization: -19.65 SS G_CDS: -0.90 Total: -20.55 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 4.14 Total: 9.16 kcal Atomic # 7 Polarization: 1.76 SS G_CDS: -2.31 Total: -0.55 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -2.52 Total: -14.60 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: 2.20 Total: 1.64 kcal Total: -25.52 0.62 -24.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_12807986.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.582 kcal (2) G-P(sol) polarization free energy of solvation -25.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds