Wall clock time and date at job start Tue Mar 9 2021 13:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38220 * 119.99759 * 2 1 4 4 C 1.50699 * 119.99786 * 359.97438 * 3 2 1 5 5 H 1.08999 * 112.85404 * 348.79852 * 4 3 2 6 6 C 1.53778 * 113.61420 * 120.00047 * 4 3 2 7 7 C 1.53780 * 87.08403 * 139.97584 * 6 4 3 8 8 H 1.09003 * 113.61712 * 219.93547 * 7 6 4 9 9 N 1.46501 * 113.61422 * 89.11527 * 7 6 4 10 10 C 1.34773 * 119.99769 * 155.00429 * 9 7 6 11 11 O 1.21579 * 120.00447 * 359.97438 * 10 9 7 12 12 C 1.47568 * 119.99621 * 180.02562 * 10 9 7 13 13 C 1.40211 * 120.12304 * 179.97438 * 12 10 9 14 14 O 1.35653 * 120.00018 * 0.03969 * 13 12 10 15 15 C 1.38816 * 120.00018 * 180.02562 * 13 12 10 16 16 C 1.37773 * 120.24121 * 359.73431 * 15 13 12 17 17 C 1.39846 * 120.24364 * 0.51832 * 16 15 13 18 18 C 1.47822 * 119.99810 * 179.75957 * 17 16 15 19 19 C 1.35931 * 125.93085 * 359.72893 * 18 17 16 20 20 C 1.40963 * 106.74397 * 180.02562 * 19 18 17 21 21 C 1.34714 * 107.02597 * 0.02562 * 20 19 18 22 22 C 1.50699 * 125.66437 * 180.02562 * 21 20 19 23 23 O 1.42903 * 109.47152 * 299.99853 * 22 21 20 24 24 Si 1.86293 * 109.47431 * 179.97438 * 22 21 20 25 25 O 1.34336 * 108.67108 * 0.25809 * 21 20 19 26 26 C 1.39178 * 120.00193 * 359.48601 * 17 16 15 27 27 C 1.53780 * 87.07775 * 334.56623 * 7 6 4 28 28 C 1.38253 * 119.99743 * 180.25091 * 3 2 1 29 29 C 1.38218 * 120.00156 * 359.53836 * 28 3 2 30 30 C 1.38256 * 119.99702 * 0.42215 * 29 28 3 31 31 C 1.38211 * 120.00222 * 359.80461 * 30 29 28 32 32 H 1.09000 * 109.46822 * 89.99744 * 1 2 3 33 33 H 1.09002 * 109.46827 * 210.00160 * 1 2 3 34 34 H 1.09001 * 109.46944 * 329.99723 * 1 2 3 35 35 H 1.09005 * 113.61600 * 25.42983 * 6 4 3 36 36 H 1.08994 * 113.61599 * 254.52594 * 6 4 3 37 37 H 0.96999 * 119.99842 * 335.00015 * 9 7 6 38 38 H 0.96701 * 114.00041 * 90.00260 * 14 13 12 39 39 H 1.07993 * 119.87989 * 180.02562 * 15 13 12 40 40 H 1.08001 * 119.87797 * 180.26092 * 16 15 13 41 41 H 1.07999 * 126.62960 * 0.02562 * 19 18 17 42 42 H 1.07996 * 126.48824 * 179.97438 * 20 19 18 43 43 H 1.09008 * 109.47393 * 59.99248 * 22 21 20 44 44 H 0.96700 * 114.00311 * 180.02562 * 23 22 21 45 45 H 1.48501 * 109.99918 * 298.67862 * 24 22 21 46 46 H 1.48506 * 109.99973 * 59.99460 * 24 22 21 47 47 H 1.07994 * 120.11895 * 180.22987 * 26 17 16 48 48 H 1.09006 * 113.61436 * 139.97965 * 27 7 6 49 49 H 1.08996 * 113.61621 * 270.87932 * 27 7 6 50 50 H 1.08002 * 119.99951 * 179.72272 * 28 3 2 51 51 H 1.08000 * 120.00078 * 180.20635 * 29 28 3 52 52 H 1.08001 * 119.99753 * 179.78865 * 30 29 28 53 53 H 1.08005 * 120.00282 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 1.4445 2.5021 -0.0006 5 1 0.3796 2.3759 -0.1961 6 6 1.7461 3.3881 1.2196 7 6 1.7290 4.5860 0.2554 8 1 2.5027 5.3250 0.4633 9 7 0.4023 5.1837 0.0855 10 6 0.2871 6.4742 -0.2856 11 8 1.2842 7.1425 -0.4790 12 6 -1.0493 7.0764 -0.4561 13 6 -1.1722 8.4188 -0.8416 14 8 -0.0613 9.1664 -1.0594 15 6 -2.4305 8.9829 -1.0008 16 6 -3.5620 8.2266 -0.7865 17 6 -3.4513 6.8882 -0.3966 18 6 -4.6690 6.0833 -0.1630 19 6 -5.9501 6.5208 -0.2859 20 6 -6.7841 5.4291 0.0298 21 6 -5.9790 4.3907 0.3271 22 6 -6.4355 3.0106 0.7245 23 8 -7.2201 3.0931 1.9161 24 14 -4.9499 1.9296 1.0323 25 8 -4.7016 4.7912 0.2154 26 6 -2.1947 6.3124 -0.2340 27 6 2.1050 3.5943 -0.8582 28 6 3.5806 1.1971 -0.0052 29 6 4.2717 0.0001 -0.0008 30 6 3.5805 -1.1972 0.0000 31 6 2.1984 -1.1973 0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 2.7231 3.2001 1.6650 36 1 0.9415 3.4077 1.9545 37 1 -0.3932 4.6506 0.2402 38 1 0.2585 9.1391 -1.9716 39 1 -2.5229 10.0169 -1.2982 40 1 -4.5382 8.6703 -0.9161 41 1 -6.2676 7.5130 -0.5705 42 1 -7.8640 5.4259 0.0335 43 1 -7.0367 2.5818 -0.0773 44 1 -7.5482 2.2397 2.2309 45 1 -4.1431 1.8098 -0.2087 46 1 -4.1215 2.5032 2.1232 47 1 -2.1070 5.2779 0.0634 48 1 1.5900 3.7804 -1.8008 49 1 3.1800 3.4627 -0.9809 50 1 4.1206 2.1324 -0.0098 51 1 5.3517 0.0001 -0.0016 52 1 4.1205 -2.1325 0.0000 53 1 1.6583 -2.1326 0.0007 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_13259648.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:31 Heat of formation + Delta-G solvation = -2.992852 kcal Electronic energy + Delta-G solvation = -37818.535526 eV Core-core repulsion = 32975.728329 eV Total energy + Delta-G solvation = -4842.807197 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.166 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -43.83027 -41.98763 -41.16569 -39.90609 -38.70631 -38.07888 -37.77939 -34.91706 -34.30195 -33.79580 -32.91528 -32.55032 -31.41412 -30.17520 -27.93325 -26.82479 -26.48727 -26.39666 -25.27367 -23.72028 -23.27942 -22.84427 -21.93040 -21.90589 -21.30349 -20.27354 -19.63308 -19.11643 -18.65372 -18.09809 -17.57391 -17.32865 -17.17512 -16.77510 -16.74524 -16.40899 -16.25914 -16.10390 -15.86847 -15.81383 -15.49868 -15.03356 -14.96567 -14.87998 -14.60028 -14.42530 -14.39567 -14.19468 -14.02309 -13.96622 -13.77744 -13.55500 -13.52422 -13.27880 -13.21615 -13.20120 -12.88318 -12.78240 -12.68515 -12.18940 -12.13512 -11.98583 -11.82169 -11.60044 -11.26464 -11.17879 -11.03838 -10.69185 -10.44692 -10.36117 -10.18814 -9.71474 -9.47250 -9.00465 -5.08898 -0.66812 -0.34014 0.38472 0.44590 0.64782 1.15545 1.34613 1.49974 1.63830 1.74595 1.85636 1.98053 2.50877 2.75400 3.00492 3.12526 3.31767 3.35898 3.51375 3.58957 3.62608 3.71165 3.73950 3.83537 3.91561 3.95424 3.95697 4.01068 4.08470 4.12021 4.19457 4.24723 4.36868 4.38112 4.50840 4.51292 4.53770 4.57201 4.65538 4.69395 4.71840 4.73081 4.75747 4.79549 4.85645 4.89837 4.91347 4.92547 5.02940 5.04550 5.10312 5.14852 5.25635 5.35696 5.40633 5.41498 5.58295 5.60504 5.72470 5.87667 6.10093 6.25602 6.65267 6.82567 6.97407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.096 4.096 3 C -0.083 4.083 4 C -0.070 4.070 5 H 0.103 0.897 6 C -0.127 4.127 7 C 0.116 3.884 8 H 0.092 0.908 9 N -0.702 5.702 10 C 0.560 3.440 11 O -0.552 6.552 12 C -0.179 4.179 13 C 0.167 3.833 14 O -0.492 6.492 15 C -0.142 4.142 16 C -0.042 4.042 17 C -0.043 4.043 18 C 0.013 3.987 19 C -0.184 4.184 20 C -0.176 4.176 21 C -0.032 4.032 22 C -0.041 4.041 23 O -0.560 6.560 24 Si 0.794 3.206 25 O -0.192 6.192 26 C -0.058 4.058 27 C -0.137 4.137 28 C -0.123 4.123 29 C -0.135 4.135 30 C -0.131 4.131 31 C -0.131 4.131 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.407 0.593 38 H 0.412 0.588 39 H 0.170 0.830 40 H 0.170 0.830 41 H 0.182 0.818 42 H 0.170 0.830 43 H 0.123 0.877 44 H 0.413 0.587 45 H -0.283 1.283 46 H -0.303 1.303 47 H 0.135 0.865 48 H 0.066 0.934 49 H 0.101 0.899 50 H 0.132 0.868 51 H 0.134 0.866 52 H 0.135 0.865 53 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.773 -5.391 -1.455 8.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.096 4.096 3 C -0.083 4.083 4 C -0.089 4.089 5 H 0.121 0.879 6 C -0.164 4.164 7 C 0.011 3.989 8 H 0.110 0.890 9 N -0.354 5.354 10 C 0.348 3.652 11 O -0.431 6.431 12 C -0.183 4.183 13 C 0.121 3.879 14 O -0.306 6.306 15 C -0.160 4.160 16 C -0.060 4.060 17 C -0.044 4.044 18 C -0.036 4.036 19 C -0.203 4.203 20 C -0.195 4.195 21 C -0.081 4.081 22 C -0.150 4.150 23 O -0.372 6.372 24 Si 0.698 3.302 25 O -0.091 6.091 26 C -0.076 4.076 27 C -0.176 4.176 28 C -0.140 4.140 29 C -0.153 4.153 30 C -0.149 4.149 31 C -0.149 4.149 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.244 0.756 38 H 0.273 0.727 39 H 0.188 0.812 40 H 0.187 0.813 41 H 0.199 0.801 42 H 0.188 0.812 43 H 0.141 0.859 44 H 0.266 0.734 45 H -0.210 1.210 46 H -0.231 1.231 47 H 0.153 0.847 48 H 0.085 0.915 49 H 0.120 0.880 50 H 0.150 0.850 51 H 0.152 0.848 52 H 0.153 0.847 53 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.855 -4.408 -1.014 6.636 hybrid contribution -0.261 0.147 -0.583 0.655 sum -5.116 -4.262 -1.597 6.847 Atomic orbital electron populations 1.20902 0.90433 1.03485 1.02804 1.20053 0.96910 0.92796 0.99796 1.19664 0.93729 0.94085 1.00788 1.21606 0.99690 0.90436 0.97123 0.87871 1.23386 1.04101 0.92856 0.96099 1.21887 0.84819 0.94628 0.97558 0.89012 1.45566 1.09267 1.11086 1.69478 1.18230 0.88602 0.81801 0.76523 1.90802 1.39184 1.61910 1.51209 1.20243 0.92857 0.95154 1.10007 1.18860 0.87520 0.87338 0.94197 1.84707 1.42188 1.67785 1.35914 1.21620 0.89806 1.02461 1.02112 1.21447 1.00702 0.90580 0.93284 1.17750 0.88619 0.93605 1.04400 1.20576 0.95128 0.81749 1.06103 1.22227 0.90527 1.02026 1.05525 1.21846 1.01882 0.91813 1.03946 1.22079 0.80673 0.98454 1.06894 1.23966 1.06066 0.92920 0.92028 1.86407 1.71420 1.38382 1.41018 0.94390 0.74387 0.83729 0.77643 1.83917 1.29862 1.26582 1.68746 1.21299 0.90583 0.99588 0.96166 1.23527 1.02171 0.94404 0.97489 1.21197 0.93775 0.98754 1.00315 1.21400 1.00812 0.92590 1.00497 1.21431 0.94625 0.98871 0.99942 1.21306 0.94651 0.98084 1.00837 0.90807 0.90353 0.91199 0.87698 0.90156 0.75624 0.72733 0.81249 0.81308 0.80056 0.81228 0.85944 0.73372 1.20989 1.23072 0.84703 0.91511 0.88046 0.85036 0.84820 0.84746 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.16 9.33 71.24 0.66 0.83 16 2 C -0.10 -0.24 5.88 -19.86 -0.12 -0.35 16 3 C -0.08 -0.20 5.29 -19.87 -0.11 -0.31 16 4 C -0.07 0.00 3.41 -11.02 -0.04 -0.03 16 5 H 0.10 -0.12 6.08 -2.39 -0.01 -0.13 16 6 C -0.13 0.06 7.29 31.12 0.23 0.29 16 7 C 0.12 0.31 4.32 45.52 0.20 0.51 16 8 H 0.09 0.58 7.46 -2.39 -0.02 0.57 16 9 N -0.70 -2.50 5.21 -443.18 -2.31 -4.81 16 10 C 0.56 4.98 7.76 86.71 0.67 5.66 16 11 O -0.55 -8.59 14.74 17.03 0.25 -8.33 16 12 C -0.18 -1.07 5.88 -20.04 -0.12 -1.18 16 13 C 0.17 0.79 6.72 22.89 0.15 0.94 16 14 O -0.49 -3.11 11.55 -68.69 -0.79 -3.90 16 15 C -0.14 0.12 9.96 22.30 0.22 0.34 16 16 C -0.04 0.07 9.54 22.55 0.22 0.29 16 17 C -0.04 -0.12 5.87 -20.13 -0.12 -0.24 16 18 C 0.01 0.06 7.03 24.27 0.17 0.23 16 19 C -0.18 -0.31 10.26 22.40 0.23 -0.08 16 20 C -0.18 -0.50 10.77 22.13 0.24 -0.26 16 21 C -0.03 -0.14 6.25 24.88 0.16 0.01 16 22 C -0.04 0.11 2.97 71.24 0.21 0.32 16 23 O -0.56 1.63 12.85 -148.98 -1.91 -0.29 16 24 Si 0.79 -2.71 32.10 68.60 2.20 -0.51 16 25 O -0.19 -1.37 8.78 -6.50 -0.06 -1.43 16 26 C -0.06 -0.21 9.20 22.79 0.21 0.00 16 27 C -0.14 -0.17 7.25 31.12 0.23 0.06 16 28 C -0.12 -0.28 8.63 22.27 0.19 -0.09 16 29 C -0.14 -0.30 10.05 22.27 0.22 -0.08 16 30 C -0.13 -0.28 10.05 22.27 0.22 -0.06 16 31 C -0.13 -0.29 9.70 22.27 0.22 -0.08 16 32 H 0.07 -0.15 8.14 -2.39 -0.02 -0.16 16 33 H 0.08 -0.26 8.09 -2.39 -0.02 -0.28 16 34 H 0.07 -0.15 6.34 -2.39 -0.02 -0.17 16 35 H 0.10 -0.12 7.73 -2.38 -0.02 -0.13 16 36 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.41 -0.09 6.73 -92.71 -0.62 -0.72 16 38 H 0.41 -0.45 9.06 -74.06 -0.67 -1.12 16 39 H 0.17 -0.97 8.06 -2.91 -0.02 -1.00 16 40 H 0.17 -1.32 6.96 -2.91 -0.02 -1.34 16 41 H 0.18 -0.85 7.25 -2.91 -0.02 -0.87 16 42 H 0.17 -0.14 8.06 -2.91 -0.02 -0.17 16 43 H 0.12 -1.04 7.96 -2.38 -0.02 -1.06 16 44 H 0.41 -5.91 8.74 -74.06 -0.65 -6.56 16 45 H -0.28 -0.52 7.11 99.48 0.71 0.19 16 46 H -0.30 -1.69 7.11 99.48 0.71 -0.98 16 47 H 0.14 0.21 6.24 -2.91 -0.02 0.20 16 48 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16 49 H 0.10 0.03 6.30 -2.39 -0.02 0.01 16 50 H 0.13 -0.06 6.64 -2.91 -0.02 -0.08 16 51 H 0.13 -0.15 8.06 -2.91 -0.02 -0.17 16 52 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 53 H 0.13 -0.16 8.06 -2.91 -0.02 -0.19 16 Total: 0.00 -27.49 439.13 0.63 -26.86 By element: Atomic # 1 Polarization: -13.41 SS G_CDS: -0.90 Total: -14.31 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 4.15 Total: 6.71 kcal Atomic # 7 Polarization: -2.50 SS G_CDS: -2.31 Total: -4.81 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -2.51 Total: -13.95 kcal Atomic # 14 Polarization: -2.71 SS G_CDS: 2.20 Total: -0.51 kcal Total: -27.49 0.63 -26.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_13259648.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.865 kcal (2) G-P(sol) polarization free energy of solvation -27.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds