Wall clock time and date at job start Tue Mar 9 2021 13:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38217 * 120.00007 * 2 1 4 4 C 1.50706 * 119.99801 * 0.02562 * 3 2 1 5 5 H 1.08998 * 112.85121 * 9.64013 * 4 3 2 6 6 C 1.53776 * 113.61190 * 140.83858 * 4 3 2 7 7 C 1.53958 * 87.02001 * 139.94958 * 6 4 3 8 8 H 1.09001 * 113.66949 * 220.06645 * 7 6 4 9 9 N 1.46495 * 113.53763 * 89.18447 * 7 6 4 10 10 C 1.34778 * 120.00215 * 107.50695 * 9 7 6 11 11 O 1.21630 * 119.99383 * 0.02562 * 10 9 7 12 12 C 1.47262 * 120.00604 * 179.97438 * 10 9 7 13 13 C 1.36775 * 126.93669 * 0.02726 * 12 10 9 14 14 N 1.34660 * 108.39404 * 179.97438 * 13 12 10 15 15 C 1.46501 * 124.85090 * 180.02562 * 14 13 12 16 16 C 1.36448 * 110.29821 * 0.02562 * 14 13 12 17 17 C 1.50697 * 125.57197 * 179.97438 * 16 14 13 18 18 O 1.42902 * 109.47268 * 329.99095 * 17 16 14 19 19 Si 1.86299 * 109.47009 * 209.99513 * 17 16 14 20 20 C 1.34488 * 108.85642 * 359.74426 * 16 14 13 21 21 C 1.53784 * 113.61085 * 238.44587 * 4 3 2 22 22 C 1.38256 * 120.00088 * 179.97438 * 3 2 1 23 23 C 1.38215 * 119.99734 * 0.02885 * 22 3 2 24 24 C 1.38253 * 120.00294 * 359.97438 * 23 22 3 25 25 C 1.38212 * 119.99859 * 359.97438 * 24 23 22 26 26 H 1.09001 * 109.47266 * 269.99835 * 1 2 3 27 27 H 1.08999 * 109.47130 * 29.99787 * 1 2 3 28 28 H 1.09004 * 109.47185 * 149.99795 * 1 2 3 29 29 H 1.09002 * 113.61688 * 254.52540 * 6 4 3 30 30 H 1.08994 * 113.61824 * 25.43185 * 6 4 3 31 31 H 0.97008 * 120.00554 * 287.51021 * 9 7 6 32 32 H 1.07995 * 125.80805 * 359.97438 * 13 12 10 33 33 H 1.08998 * 109.46840 * 89.97926 * 15 14 13 34 34 H 1.09001 * 109.46941 * 209.97742 * 15 14 13 35 35 H 1.08999 * 109.46746 * 329.97895 * 15 14 13 36 36 H 1.08992 * 109.47977 * 89.99477 * 17 16 14 37 37 H 0.96708 * 113.99866 * 300.00783 * 18 17 16 38 38 H 1.48504 * 110.00319 * 58.67826 * 19 17 16 39 39 H 1.48507 * 110.00070 * 179.97438 * 19 17 16 40 40 H 1.08003 * 126.83211 * 180.25982 * 20 16 14 41 41 H 1.08996 * 113.61625 * 334.56736 * 21 4 3 42 42 H 1.09005 * 113.61198 * 105.38918 * 21 4 3 43 43 H 1.07995 * 120.00047 * 180.29818 * 22 3 2 44 44 H 1.08000 * 119.99306 * 179.97438 * 23 22 3 45 45 H 1.08002 * 120.00364 * 180.02562 * 24 23 22 46 46 H 1.08000 * 119.99961 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1970 0.0000 4 6 1.4445 2.5021 0.0006 5 1 0.3754 2.3735 0.1692 6 6 2.0830 3.5816 0.8904 7 6 1.7346 4.5892 -0.2204 8 1 2.5138 5.3302 -0.3991 9 7 0.4043 5.1847 -0.0738 10 6 0.2801 6.4701 0.3120 11 8 1.2727 7.1358 0.5379 12 6 -1.0572 7.0691 0.4588 13 6 -2.2606 6.4559 0.2429 14 7 -3.2410 7.3461 0.4874 15 6 -4.6742 7.0671 0.3673 16 6 -2.7088 8.5451 0.8630 17 6 -3.4952 9.7811 1.2163 18 8 -4.7222 9.7906 0.4839 19 14 -2.5008 11.2952 0.7813 20 6 -1.3679 8.4420 0.8712 21 6 1.7746 3.4045 -1.2001 22 6 3.5807 1.1970 0.0005 23 6 4.2717 0.0000 0.0005 24 6 3.5805 -1.1973 0.0004 25 6 2.1983 -1.1973 0.0009 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 1.5444 3.7541 1.8222 30 1 3.1546 3.4480 1.0382 31 1 -0.3874 4.6540 -0.2543 32 1 -2.4008 5.4320 -0.0705 33 1 -5.0540 6.7004 1.3208 34 1 -5.2007 7.9815 0.0939 35 1 -4.8340 6.3118 -0.4022 36 1 -3.7099 9.7822 2.2848 37 1 -4.6072 9.7902 -0.4763 38 1 -2.1743 11.2896 -0.6674 39 1 -3.2656 12.5211 1.1243 40 1 -0.6606 9.2165 1.1286 41 1 2.7618 3.2224 -1.6248 42 1 0.9880 3.4330 -1.9542 43 1 4.1206 2.1323 0.0054 44 1 5.3517 0.0001 0.0005 45 1 4.1204 -2.1326 0.0008 46 1 1.6583 -2.1326 0.0013 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_13287730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:43 Heat of formation + Delta-G solvation = 40.575157 kcal Electronic energy + Delta-G solvation = -26991.366163 eV Core-core repulsion = 23235.291252 eV Total energy + Delta-G solvation = -3756.074911 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.46643 -41.48568 -40.11279 -38.62069 -37.93422 -34.59455 -33.77694 -33.60337 -31.85202 -31.05104 -27.93073 -27.55731 -26.66824 -26.52107 -25.79313 -23.94004 -22.83482 -21.82940 -21.04789 -20.68159 -20.00104 -19.03354 -17.73435 -17.43086 -16.99069 -16.81247 -16.75547 -16.38520 -15.99055 -15.80143 -15.59484 -15.37969 -15.12723 -14.89869 -14.77818 -14.62148 -14.30823 -14.10389 -13.94794 -13.55724 -13.46316 -13.39467 -13.21791 -13.12510 -13.01783 -12.77926 -12.68213 -12.35354 -12.04072 -11.97091 -11.66917 -11.50088 -11.13176 -11.00545 -10.89378 -10.08435 -9.66058 -9.54782 -9.39875 -9.20109 -4.88931 0.44823 0.49977 0.74551 1.03684 1.45234 1.63474 1.81304 2.06003 2.26263 2.55884 2.81773 3.16258 3.51065 3.56818 3.73749 3.76558 3.89279 3.94908 3.98493 4.05588 4.08880 4.21855 4.27782 4.31116 4.44419 4.45591 4.46382 4.52082 4.61552 4.67937 4.78492 4.79067 4.83507 4.85201 4.89360 4.96493 4.97654 5.00961 5.04487 5.05310 5.20556 5.22614 5.34724 5.57936 5.65065 5.65658 5.69889 5.80769 5.97320 6.16268 6.23812 6.32538 6.65903 7.36240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 C -0.081 4.081 4 C -0.066 4.066 5 H 0.115 0.885 6 C -0.142 4.142 7 C 0.119 3.881 8 H 0.083 0.917 9 N -0.698 5.698 10 C 0.590 3.410 11 O -0.592 6.592 12 C -0.261 4.261 13 C 0.071 3.929 14 N -0.426 5.426 15 C 0.046 3.954 16 C -0.024 4.024 17 C -0.043 4.043 18 O -0.538 6.538 19 Si 0.773 3.227 20 C -0.155 4.155 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.138 4.138 24 C -0.133 4.133 25 C -0.134 4.134 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.412 0.588 32 H 0.207 0.793 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.388 0.612 38 H -0.294 1.294 39 H -0.288 1.288 40 H 0.155 0.845 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.130 0.870 44 H 0.131 0.869 45 H 0.131 0.869 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 -4.116 -1.230 6.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 C -0.081 4.081 4 C -0.084 4.084 5 H 0.133 0.867 6 C -0.181 4.181 7 C 0.013 3.987 8 H 0.101 0.899 9 N -0.349 5.349 10 C 0.381 3.619 11 O -0.473 6.473 12 C -0.271 4.271 13 C -0.067 4.067 14 N -0.100 5.100 15 C -0.094 4.094 16 C -0.133 4.133 17 C -0.153 4.153 18 O -0.347 6.347 19 Si 0.677 3.323 20 C -0.179 4.179 21 C -0.162 4.162 22 C -0.142 4.142 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.152 4.152 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.250 0.750 32 H 0.224 0.776 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.150 0.850 37 H 0.238 0.762 38 H -0.221 1.221 39 H -0.215 1.215 40 H 0.172 0.828 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.148 0.852 44 H 0.149 0.851 45 H 0.149 0.851 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.214 -2.962 -0.981 6.077 hybrid contribution -0.556 -0.760 -0.794 1.232 sum -5.770 -3.723 -1.775 7.092 Atomic orbital electron populations 1.20896 0.89923 1.03684 1.02888 1.20100 0.97243 0.92593 0.99552 1.19734 0.93572 0.94436 1.00312 1.21630 1.00107 0.89724 0.96919 0.86738 1.23565 1.01868 0.94992 0.97680 1.21819 0.85372 0.94336 0.97192 0.89920 1.45329 1.08787 1.11401 1.69419 1.17688 0.87938 0.81272 0.75034 1.90753 1.40671 1.62842 1.53044 1.20296 0.91639 0.96719 1.18411 1.22412 0.85876 0.96686 1.01699 1.43725 1.07995 1.08601 1.49680 1.22737 0.76268 1.05869 1.04503 1.20801 0.93010 0.89302 1.10198 1.24722 0.89434 1.00295 1.00815 1.86538 1.29108 1.95218 1.23813 0.93302 0.84435 0.72815 0.81791 1.21818 0.93639 0.96595 1.05840 1.23353 1.03918 0.92739 0.96198 1.21210 0.94097 0.98549 1.00328 1.21380 1.00715 0.92713 1.00747 1.21400 0.94735 0.98750 1.00253 1.21307 0.94587 0.98241 1.01084 0.90730 0.90038 0.91065 0.91551 0.88963 0.75047 0.77637 0.90279 0.87153 0.87676 0.85018 0.76214 1.22065 1.21543 0.82799 0.88526 0.89319 0.85198 0.85105 0.85085 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.48 9.34 71.24 0.67 1.14 16 2 C -0.09 -0.09 5.88 -19.87 -0.12 -0.21 16 3 C -0.08 -0.07 5.29 -19.86 -0.11 -0.17 16 4 C -0.07 0.20 3.43 -11.01 -0.04 0.16 16 5 H 0.11 -0.70 6.02 -2.39 -0.01 -0.71 16 6 C -0.14 0.01 7.27 31.18 0.23 0.23 16 7 C 0.12 0.09 4.33 45.58 0.20 0.29 16 8 H 0.08 0.48 7.46 -2.39 -0.02 0.47 16 9 N -0.70 0.11 5.25 -443.16 -2.33 -2.21 16 10 C 0.59 4.46 7.81 86.62 0.68 5.14 16 11 O -0.59 -10.05 16.57 -4.13 -0.07 -10.12 16 12 C -0.26 -1.01 6.29 -19.04 -0.12 -1.13 16 13 C 0.07 -0.24 10.83 83.92 0.91 0.67 16 14 N -0.43 1.26 3.09 -533.24 -1.65 -0.38 16 15 C 0.05 -0.39 10.71 127.77 1.37 0.98 16 16 C -0.02 -0.01 6.13 40.98 0.25 0.25 16 17 C -0.04 0.10 2.98 71.24 0.21 0.31 16 18 O -0.54 1.45 9.95 -148.98 -1.48 -0.03 16 19 Si 0.77 -0.73 31.13 68.60 2.14 1.40 16 20 C -0.15 -0.65 9.49 23.62 0.22 -0.43 16 21 C -0.12 0.42 7.29 31.12 0.23 0.64 16 22 C -0.12 -0.22 8.54 22.27 0.19 -0.03 16 23 C -0.14 -0.31 10.05 22.27 0.22 -0.09 16 24 C -0.13 -0.29 10.05 22.27 0.22 -0.07 16 25 C -0.13 -0.25 9.70 22.27 0.22 -0.03 16 26 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H 0.08 -0.56 6.31 -2.39 -0.02 -0.57 16 28 H 0.07 -0.34 8.09 -2.39 -0.02 -0.36 16 29 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.09 0.02 6.39 -2.39 -0.02 0.01 16 31 H 0.41 -2.97 7.64 -92.70 -0.71 -3.68 16 32 H 0.21 -2.48 7.45 -2.91 -0.02 -2.50 16 33 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.11 -0.90 4.93 -2.39 -0.01 -0.91 16 35 H 0.10 -1.36 8.13 -2.39 -0.02 -1.38 16 36 H 0.13 -0.53 7.96 -2.39 -0.02 -0.55 16 37 H 0.39 -2.89 8.38 -74.05 -0.62 -3.52 16 38 H -0.29 -1.55 7.11 99.48 0.71 -0.84 16 39 H -0.29 -1.41 7.11 99.48 0.71 -0.70 16 40 H 0.15 0.54 6.90 -2.91 -0.02 0.52 16 41 H 0.10 -0.26 7.65 -2.39 -0.02 -0.28 16 42 H 0.09 -0.50 8.14 -2.38 -0.02 -0.52 16 43 H 0.13 -0.08 6.72 -2.91 -0.02 -0.10 16 44 H 0.13 -0.10 8.06 -2.91 -0.02 -0.12 16 45 H 0.13 -0.13 8.06 -2.91 -0.02 -0.15 16 46 H 0.13 -0.17 8.06 -2.91 -0.02 -0.19 16 Total: 0.00 -22.52 372.41 1.77 -20.75 By element: Atomic # 1 Polarization: -16.79 SS G_CDS: -0.28 Total: -17.06 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 5.43 Total: 7.65 kcal Atomic # 7 Polarization: 1.37 SS G_CDS: -3.97 Total: -2.60 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -1.55 Total: -10.14 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: 2.14 Total: 1.40 kcal Total: -22.52 1.77 -20.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_13287730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.328 kcal (2) G-P(sol) polarization free energy of solvation -22.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds