Wall clock time and date at job start Tue Mar 9 2021 13:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37684 * 119.95795 * 2 1 4 4 C 1.39747 * 119.91453 * 179.97438 * 3 2 1 5 5 C 1.47602 * 120.08739 * 180.02562 * 4 3 2 6 6 O 1.21588 * 120.00153 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00140 * 359.97438 * 5 4 3 8 8 C 1.46504 * 120.00284 * 179.97438 * 7 5 4 9 9 H 1.09010 * 112.84779 * 23.81341 * 8 7 5 10 10 C 1.53780 * 113.61579 * 155.00180 * 8 7 5 11 11 C 1.53781 * 87.07711 * 89.11841 * 10 8 7 12 12 H 1.08998 * 113.62044 * 270.80350 * 11 10 8 13 13 C 1.50706 * 113.61237 * 139.97944 * 11 10 8 14 14 C 1.38216 * 119.99818 * 120.00280 * 13 11 10 15 15 C 1.50700 * 119.99971 * 359.97438 * 14 13 11 16 16 C 1.38255 * 119.99744 * 179.97438 * 14 13 11 17 17 C 1.38212 * 120.00300 * 359.97134 * 16 14 13 18 18 C 1.38260 * 119.99650 * 0.28729 * 17 16 14 19 19 C 1.38208 * 120.00078 * 359.52112 * 18 17 16 20 20 C 1.53775 * 113.61656 * 252.50646 * 8 7 5 21 21 C 1.39714 * 119.82769 * 0.28201 * 4 3 2 22 22 C 1.37734 * 119.90463 * 359.39609 * 21 4 3 23 23 C 1.50700 * 119.95470 * 180.33830 * 22 21 4 24 24 O 1.42903 * 109.46684 * 105.28076 * 23 22 21 25 25 Si 1.86306 * 109.47207 * 345.28593 * 23 22 21 26 26 C 1.38970 * 120.08639 * 0.62589 * 22 21 4 27 27 O 1.35716 * 119.90966 * 179.69441 * 26 22 21 28 28 H 1.08998 * 109.47023 * 90.00018 * 1 2 3 29 29 H 1.09002 * 109.47153 * 209.99814 * 1 2 3 30 30 H 1.08994 * 109.47209 * 329.99709 * 1 2 3 31 31 H 1.08000 * 120.03999 * 0.02910 * 3 2 1 32 32 H 0.97003 * 120.00145 * 0.02562 * 7 5 4 33 33 H 1.08994 * 113.61451 * 334.57495 * 10 8 7 34 34 H 1.09004 * 113.69263 * 203.67934 * 10 8 7 35 35 H 1.08995 * 109.47498 * 269.98140 * 15 14 13 36 36 H 1.08999 * 109.46948 * 29.98802 * 15 14 13 37 37 H 1.09009 * 109.46815 * 149.97775 * 15 14 13 38 38 H 1.07999 * 119.99759 * 179.97438 * 16 14 13 39 39 H 1.08002 * 119.99812 * 180.02562 * 17 16 14 40 40 H 1.08004 * 119.99616 * 179.72197 * 18 17 16 41 41 H 1.07999 * 119.99916 * 180.23498 * 19 18 17 42 42 H 1.09007 * 113.61692 * 156.33587 * 20 8 7 43 43 H 1.08998 * 113.61886 * 25.43150 * 20 8 7 44 44 H 1.08000 * 120.04653 * 179.71697 * 21 4 3 45 45 H 1.08993 * 109.47072 * 225.28588 * 23 22 21 46 46 H 0.96695 * 113.99980 * 179.97438 * 24 23 22 47 47 H 1.48495 * 109.99681 * 298.67743 * 25 23 22 48 48 H 1.48499 * 110.00148 * 59.99547 * 25 23 22 49 49 H 0.96697 * 113.99864 * 269.97162 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1929 0.0000 4 6 3.5920 1.1918 0.0005 5 6 4.3329 2.4684 0.0011 6 8 5.5488 2.4657 0.0011 7 7 3.6617 3.6372 0.0006 8 6 4.3971 4.9043 0.0017 9 1 5.4049 4.8091 -0.4027 10 6 3.6025 6.0782 -0.5944 11 6 3.0619 6.3294 0.8232 12 1 2.1489 5.7774 1.0466 13 6 2.9655 7.7898 1.1826 14 6 1.7419 8.3407 1.5135 15 6 0.5040 7.4812 1.5144 16 6 1.6536 9.6804 1.8437 17 6 2.7890 10.4685 1.8434 18 6 4.0121 9.9185 1.5072 19 6 4.1011 8.5785 1.1810 20 6 4.3384 5.6494 1.3456 21 6 4.2860 -0.0207 -0.0049 22 6 3.5909 -1.2098 0.0018 23 6 4.3384 -2.5184 0.0037 24 8 4.2710 -3.1034 1.3057 25 14 6.1200 -2.2165 -0.4500 26 6 2.2012 -1.2044 0.0009 27 8 1.5199 -2.3782 0.0012 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6545 2.1282 0.0005 32 1 2.6917 3.6394 0.0002 33 1 2.8362 5.7703 -1.3057 34 1 4.2304 6.8854 -0.9716 35 1 0.0430 7.5070 0.5271 36 1 0.7745 6.4549 1.7625 37 1 -0.2008 7.8602 2.2546 38 1 0.6974 10.1110 2.1019 39 1 2.7200 11.5149 2.1018 40 1 4.8986 10.5355 1.5027 41 1 5.0571 8.1480 0.9220 42 1 5.1687 6.3387 1.4993 43 1 4.1663 4.9954 2.2004 44 1 5.3660 -0.0257 -0.0091 45 1 3.8881 -3.1950 -0.7225 46 1 4.7316 -3.9503 1.3806 47 1 6.2053 -1.6376 -1.8148 48 1 6.7453 -1.2953 0.5325 49 1 1.3227 -2.7187 -0.8820 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9744652_13287732.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:47 Heat of formation + Delta-G solvation = -30.963308 kcal Electronic energy + Delta-G solvation = -30730.197721 eV Core-core repulsion = 26589.538248 eV Total energy + Delta-G solvation = -4140.659473 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.94267 -41.33004 -40.24093 -38.83062 -37.75036 -37.50389 -34.81048 -34.12196 -33.78553 -32.16927 -31.24507 -28.15029 -27.95366 -26.94704 -26.80634 -26.30093 -24.78252 -23.03228 -22.07610 -21.84955 -21.55503 -20.18565 -19.57729 -18.68150 -18.43864 -17.76473 -17.63078 -16.85272 -16.69634 -16.44822 -16.09618 -15.94519 -15.85248 -15.41420 -15.19428 -15.04393 -14.93318 -14.87193 -14.45917 -14.34824 -14.03494 -13.91823 -13.75296 -13.70965 -13.54435 -13.51804 -13.30106 -13.05788 -12.93999 -12.82295 -12.74926 -12.62032 -12.11033 -11.93602 -11.78184 -11.58961 -11.53521 -11.23123 -11.02628 -10.31185 -10.19292 -10.03843 -9.71371 -9.67256 -9.44776 -4.99126 -0.42776 0.00698 0.42339 0.48062 1.25591 1.58781 1.68166 1.94359 2.01323 2.52122 2.78967 2.97049 3.28021 3.36936 3.47524 3.56789 3.60138 3.66010 3.74925 3.85741 3.89167 3.94551 3.99746 4.06774 4.07779 4.18902 4.24738 4.32118 4.34411 4.47880 4.53575 4.55413 4.56994 4.60410 4.64427 4.66509 4.73091 4.76519 4.84860 4.90661 4.94024 4.94665 5.03395 5.03579 5.07694 5.15053 5.21586 5.23140 5.43437 5.50144 5.60607 5.63553 5.75416 6.11063 6.36132 6.49769 6.64609 7.10962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.116 4.116 3 C -0.066 4.066 4 C -0.138 4.138 5 C 0.564 3.436 6 O -0.531 6.531 7 N -0.708 5.708 8 C 0.119 3.881 9 H 0.107 0.893 10 C -0.134 4.134 11 C -0.078 4.078 12 H 0.101 0.899 13 C -0.073 4.073 14 C -0.083 4.083 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.120 4.120 18 C -0.123 4.123 19 C -0.113 4.113 20 C -0.144 4.144 21 C -0.053 4.053 22 C -0.106 4.106 23 C -0.060 4.060 24 O -0.538 6.538 25 Si 0.676 3.324 26 C 0.163 3.837 27 O -0.481 6.481 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.400 0.600 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.139 0.861 45 H 0.073 0.927 46 H 0.382 0.618 47 H -0.252 1.252 48 H -0.245 1.245 49 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 -1.701 -2.848 4.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.117 4.117 3 C -0.085 4.085 4 C -0.141 4.141 5 C 0.352 3.648 6 O -0.408 6.408 7 N -0.359 5.359 8 C 0.013 3.987 9 H 0.125 0.875 10 C -0.172 4.172 11 C -0.096 4.096 12 H 0.119 0.881 13 C -0.073 4.073 14 C -0.083 4.083 15 C -0.175 4.175 16 C -0.137 4.137 17 C -0.138 4.138 18 C -0.141 4.141 19 C -0.131 4.131 20 C -0.183 4.183 21 C -0.071 4.071 22 C -0.107 4.107 23 C -0.170 4.170 24 O -0.344 6.344 25 Si 0.577 3.423 26 C 0.117 3.883 27 O -0.292 6.292 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.151 0.849 32 H 0.236 0.764 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.115 0.885 43 H 0.093 0.907 44 H 0.157 0.843 45 H 0.091 0.909 46 H 0.229 0.771 47 H -0.177 1.177 48 H -0.169 1.169 49 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.514 -0.506 -2.358 3.484 hybrid contribution -1.097 0.295 -0.419 1.211 sum -3.611 -0.211 -2.778 4.561 Atomic orbital electron populations 1.20737 0.89491 1.03964 1.02843 1.20213 0.97413 0.91968 1.02105 1.21087 0.92408 0.97913 0.97056 1.19760 0.93553 0.93215 1.07597 1.18119 0.87217 0.83519 0.75933 1.90813 1.13359 1.87446 1.49164 1.45550 1.10055 1.04922 1.75411 1.21895 0.97307 0.82163 0.97310 0.87479 1.23412 1.00008 0.97648 0.96086 1.21687 0.98893 0.92403 0.96574 0.88107 1.19497 0.92849 0.94855 1.00074 1.19782 0.94807 0.94421 0.99292 1.20872 0.94994 0.99147 1.02505 1.21056 0.98673 0.93382 1.00593 1.21173 0.92792 0.99923 0.99870 1.21151 0.97849 0.95248 0.99847 1.20997 0.98081 0.93817 1.00219 1.23576 0.97838 0.99139 0.97703 1.20988 1.00249 0.90551 0.95338 1.19670 0.93165 0.94013 1.03863 1.24458 1.09758 0.93572 0.89244 1.86538 1.79213 1.40472 1.28224 0.95454 0.78207 0.88167 0.80491 1.18278 0.88590 0.85361 0.96050 1.84786 1.75555 1.35633 1.33243 0.90766 0.90269 0.90984 0.84902 0.76386 0.90513 0.88213 0.91058 0.91299 0.91461 0.86082 0.86058 0.86035 0.85955 0.88508 0.90674 0.84342 0.90941 0.77051 1.17680 1.16925 0.74942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.21 9.79 36.00 0.35 0.56 16 2 C -0.12 -0.05 5.89 -104.54 -0.62 -0.67 16 3 C -0.07 -0.01 9.18 -39.22 -0.36 -0.37 16 4 C -0.14 -0.38 5.87 -104.96 -0.62 -1.00 16 5 C 0.56 2.08 7.76 -12.44 -0.10 1.98 16 6 O -0.53 -4.01 15.94 5.29 0.08 -3.93 16 7 N -0.71 -0.18 5.21 -54.03 -0.28 -0.46 16 8 C 0.12 0.02 4.32 -67.12 -0.29 -0.27 16 9 H 0.11 0.20 7.46 -51.92 -0.39 -0.19 16 10 C -0.13 0.19 7.29 -25.92 -0.19 0.00 16 11 C -0.08 0.08 3.58 -90.95 -0.33 -0.25 16 12 H 0.10 -0.20 5.76 -51.93 -0.30 -0.50 16 13 C -0.07 -0.05 5.29 -104.62 -0.55 -0.60 16 14 C -0.08 -0.07 5.88 -104.62 -0.62 -0.68 16 15 C -0.12 0.14 9.53 36.01 0.34 0.49 16 16 C -0.12 -0.12 9.70 -39.58 -0.38 -0.50 16 17 C -0.12 -0.12 10.05 -39.58 -0.40 -0.52 16 18 C -0.12 -0.11 10.05 -39.58 -0.40 -0.51 16 19 C -0.11 -0.09 8.61 -39.59 -0.34 -0.43 16 20 C -0.14 0.02 7.25 -25.92 -0.19 -0.17 16 21 C -0.05 -0.21 8.20 -39.21 -0.32 -0.53 16 22 C -0.11 -0.29 5.30 -104.54 -0.55 -0.85 16 23 C -0.06 -0.04 2.36 36.01 0.09 0.05 16 24 O -0.54 -0.77 12.86 -35.23 -0.45 -1.22 16 25 Si 0.68 0.13 30.18 -169.99 -5.13 -5.00 16 26 C 0.16 0.27 6.66 -39.02 -0.26 0.01 16 27 O -0.48 -0.16 11.84 -18.85 -0.22 -0.38 16 28 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 29 H 0.08 -0.08 7.52 -51.93 -0.39 -0.47 16 30 H 0.07 -0.20 8.08 -51.93 -0.42 -0.62 16 31 H 0.13 -0.41 6.40 -52.49 -0.34 -0.75 16 32 H 0.40 -1.00 6.72 -40.82 -0.27 -1.27 16 33 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 34 H 0.10 -0.14 7.72 -51.93 -0.40 -0.54 16 35 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 36 H 0.07 -0.13 5.99 -51.93 -0.31 -0.45 16 37 H 0.07 -0.10 8.09 -51.92 -0.42 -0.52 16 38 H 0.12 -0.06 8.06 -52.49 -0.42 -0.48 16 39 H 0.12 -0.07 8.06 -52.49 -0.42 -0.50 16 40 H 0.12 -0.08 8.06 -52.48 -0.42 -0.50 16 41 H 0.12 -0.07 6.66 -52.49 -0.35 -0.42 16 42 H 0.10 -0.03 6.31 -51.93 -0.33 -0.36 16 43 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 44 H 0.14 0.72 4.47 -52.49 -0.23 0.49 16 45 H 0.07 -0.12 7.82 -51.93 -0.41 -0.52 16 46 H 0.38 -1.42 8.74 45.56 0.40 -1.03 16 47 H -0.25 -0.69 7.11 56.52 0.40 -0.29 16 48 H -0.24 -0.98 6.76 56.52 0.38 -0.60 16 49 H 0.39 -1.74 9.06 45.56 0.41 -1.33 16 LS Contribution 396.00 15.07 5.97 5.97 Total: 0.00 -10.58 396.00 -11.68 -22.27 By element: Atomic # 1 Polarization: -7.06 SS G_CDS: -5.92 Total: -12.98 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -5.72 Total: -4.27 kcal Atomic # 7 Polarization: -0.18 SS G_CDS: -0.28 Total: -0.46 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.59 Total: -5.53 kcal Atomic # 14 Polarization: 0.13 SS G_CDS: -5.13 Total: -5.00 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -10.58 -11.68 -22.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_13287732.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.696 kcal (2) G-P(sol) polarization free energy of solvation -10.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds