Wall clock time and date at job start Tue Mar 9 2021 13:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37684 * 119.95795 * 2 1 4 4 C 1.39747 * 119.91453 * 179.97438 * 3 2 1 5 5 C 1.47602 * 120.08739 * 180.02562 * 4 3 2 6 6 O 1.21588 * 120.00153 * 180.02562 * 5 4 3 7 7 N 1.34777 * 120.00140 * 359.97438 * 5 4 3 8 8 C 1.46504 * 120.00284 * 179.97438 * 7 5 4 9 9 H 1.09010 * 112.84779 * 23.81341 * 8 7 5 10 10 C 1.53780 * 113.61579 * 155.00180 * 8 7 5 11 11 C 1.53781 * 87.07711 * 89.11841 * 10 8 7 12 12 H 1.08998 * 113.62044 * 270.80350 * 11 10 8 13 13 C 1.50706 * 113.61237 * 139.97944 * 11 10 8 14 14 C 1.38216 * 119.99818 * 120.00280 * 13 11 10 15 15 C 1.50700 * 119.99971 * 359.97438 * 14 13 11 16 16 C 1.38255 * 119.99744 * 179.97438 * 14 13 11 17 17 C 1.38212 * 120.00300 * 359.97134 * 16 14 13 18 18 C 1.38260 * 119.99650 * 0.28729 * 17 16 14 19 19 C 1.38208 * 120.00078 * 359.52112 * 18 17 16 20 20 C 1.53775 * 113.61656 * 252.50646 * 8 7 5 21 21 C 1.39714 * 119.82769 * 0.28201 * 4 3 2 22 22 C 1.37734 * 119.90463 * 359.39609 * 21 4 3 23 23 C 1.50700 * 119.95470 * 180.33830 * 22 21 4 24 24 O 1.42903 * 109.46684 * 105.28076 * 23 22 21 25 25 Si 1.86306 * 109.47207 * 345.28593 * 23 22 21 26 26 C 1.38970 * 120.08639 * 0.62589 * 22 21 4 27 27 O 1.35716 * 119.90966 * 179.69441 * 26 22 21 28 28 H 1.08998 * 109.47023 * 90.00018 * 1 2 3 29 29 H 1.09002 * 109.47153 * 209.99814 * 1 2 3 30 30 H 1.08994 * 109.47209 * 329.99709 * 1 2 3 31 31 H 1.08000 * 120.03999 * 0.02910 * 3 2 1 32 32 H 0.97003 * 120.00145 * 0.02562 * 7 5 4 33 33 H 1.08994 * 113.61451 * 334.57495 * 10 8 7 34 34 H 1.09004 * 113.69263 * 203.67934 * 10 8 7 35 35 H 1.08995 * 109.47498 * 269.98140 * 15 14 13 36 36 H 1.08999 * 109.46948 * 29.98802 * 15 14 13 37 37 H 1.09009 * 109.46815 * 149.97775 * 15 14 13 38 38 H 1.07999 * 119.99759 * 179.97438 * 16 14 13 39 39 H 1.08002 * 119.99812 * 180.02562 * 17 16 14 40 40 H 1.08004 * 119.99616 * 179.72197 * 18 17 16 41 41 H 1.07999 * 119.99916 * 180.23498 * 19 18 17 42 42 H 1.09007 * 113.61692 * 156.33587 * 20 8 7 43 43 H 1.08998 * 113.61886 * 25.43150 * 20 8 7 44 44 H 1.08000 * 120.04653 * 179.71697 * 21 4 3 45 45 H 1.08993 * 109.47072 * 225.28588 * 23 22 21 46 46 H 0.96695 * 113.99980 * 179.97438 * 24 23 22 47 47 H 1.48495 * 109.99681 * 298.67743 * 25 23 22 48 48 H 1.48499 * 110.00148 * 59.99547 * 25 23 22 49 49 H 0.96697 * 113.99864 * 269.97162 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1929 0.0000 4 6 3.5920 1.1918 0.0005 5 6 4.3329 2.4684 0.0011 6 8 5.5488 2.4657 0.0011 7 7 3.6617 3.6372 0.0006 8 6 4.3971 4.9043 0.0017 9 1 5.4049 4.8091 -0.4027 10 6 3.6025 6.0782 -0.5944 11 6 3.0619 6.3294 0.8232 12 1 2.1489 5.7774 1.0466 13 6 2.9655 7.7898 1.1826 14 6 1.7419 8.3407 1.5135 15 6 0.5040 7.4812 1.5144 16 6 1.6536 9.6804 1.8437 17 6 2.7890 10.4685 1.8434 18 6 4.0121 9.9185 1.5072 19 6 4.1011 8.5785 1.1810 20 6 4.3384 5.6494 1.3456 21 6 4.2860 -0.0207 -0.0049 22 6 3.5909 -1.2098 0.0018 23 6 4.3384 -2.5184 0.0037 24 8 4.2710 -3.1034 1.3057 25 14 6.1200 -2.2165 -0.4500 26 6 2.2012 -1.2044 0.0009 27 8 1.5199 -2.3782 0.0012 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6545 2.1282 0.0005 32 1 2.6917 3.6394 0.0002 33 1 2.8362 5.7703 -1.3057 34 1 4.2304 6.8854 -0.9716 35 1 0.0430 7.5070 0.5271 36 1 0.7745 6.4549 1.7625 37 1 -0.2008 7.8602 2.2546 38 1 0.6974 10.1110 2.1019 39 1 2.7200 11.5149 2.1018 40 1 4.8986 10.5355 1.5027 41 1 5.0571 8.1480 0.9220 42 1 5.1687 6.3387 1.4993 43 1 4.1663 4.9954 2.2004 44 1 5.3660 -0.0257 -0.0091 45 1 3.8881 -3.1950 -0.7225 46 1 4.7316 -3.9503 1.3806 47 1 6.2053 -1.6376 -1.8148 48 1 6.7453 -1.2953 0.5325 49 1 1.3227 -2.7187 -0.8820 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_13287732.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:46 Heat of formation + Delta-G solvation = -31.505615 kcal Electronic energy + Delta-G solvation = -30730.221237 eV Core-core repulsion = 26589.538248 eV Total energy + Delta-G solvation = -4140.682990 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.04652 -41.34796 -40.36269 -38.89611 -37.78409 -37.58107 -34.95788 -34.15235 -33.75539 -32.21964 -31.27950 -28.09179 -27.89226 -26.99886 -26.78193 -26.32682 -24.88171 -23.05428 -22.10665 -21.87448 -21.68215 -20.21392 -19.59894 -18.80844 -18.47755 -17.83620 -17.65242 -16.87150 -16.74455 -16.49057 -16.27275 -16.04557 -15.88912 -15.55238 -15.22780 -15.07703 -14.95847 -14.86954 -14.39908 -14.33580 -13.99828 -13.98357 -13.77873 -13.73241 -13.55586 -13.48822 -13.19554 -12.99212 -12.92842 -12.84898 -12.74710 -12.70293 -12.19859 -12.08127 -11.79057 -11.57868 -11.53692 -11.29932 -11.23330 -10.37117 -10.33511 -10.09765 -9.77552 -9.69547 -9.44933 -5.08817 -0.54210 -0.08387 0.40636 0.46018 1.19794 1.43249 1.53676 1.82330 1.91720 2.39569 2.77508 2.98777 3.26186 3.38597 3.40710 3.51570 3.62133 3.66350 3.78462 3.84126 3.88791 3.98385 4.03867 4.04927 4.14024 4.21349 4.27838 4.33333 4.39658 4.49142 4.54623 4.57995 4.63504 4.69274 4.74137 4.78818 4.79315 4.83962 4.89265 4.91167 4.94078 4.94933 4.98079 5.06734 5.13424 5.16629 5.22324 5.31448 5.41169 5.51135 5.60313 5.61863 5.75728 6.12142 6.27714 6.68705 6.87234 6.94417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.116 4.116 3 C -0.054 4.054 4 C -0.154 4.154 5 C 0.560 3.440 6 O -0.583 6.583 7 N -0.688 5.688 8 C 0.112 3.888 9 H 0.085 0.915 10 C -0.121 4.121 11 C -0.067 4.067 12 H 0.117 0.883 13 C -0.082 4.082 14 C -0.094 4.094 15 C -0.118 4.118 16 C -0.133 4.133 17 C -0.132 4.132 18 C -0.138 4.138 19 C -0.124 4.124 20 C -0.144 4.144 21 C -0.082 4.082 22 C -0.127 4.127 23 C -0.059 4.059 24 O -0.559 6.559 25 Si 0.763 3.237 26 C 0.163 3.837 27 O -0.488 6.488 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.169 0.831 32 H 0.417 0.583 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.112 0.888 45 H 0.103 0.897 46 H 0.403 0.597 47 H -0.291 1.291 48 H -0.308 1.308 49 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 -2.136 -3.276 7.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.117 4.117 3 C -0.073 4.073 4 C -0.157 4.157 5 C 0.349 3.651 6 O -0.464 6.464 7 N -0.340 5.340 8 C 0.007 3.993 9 H 0.103 0.897 10 C -0.158 4.158 11 C -0.085 4.085 12 H 0.135 0.865 13 C -0.082 4.082 14 C -0.094 4.094 15 C -0.175 4.175 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.142 4.142 20 C -0.183 4.183 21 C -0.100 4.100 22 C -0.128 4.128 23 C -0.169 4.169 24 O -0.369 6.369 25 Si 0.671 3.329 26 C 0.117 3.883 27 O -0.302 6.302 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.186 0.814 32 H 0.256 0.744 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.129 0.871 45 H 0.121 0.879 46 H 0.254 0.746 47 H -0.218 1.218 48 H -0.237 1.237 49 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -5.537 -0.972 -2.803 6.282 hybrid contribution -0.156 0.490 -0.262 0.577 sum -5.694 -0.481 -3.065 6.484 Atomic orbital electron populations 1.20793 0.87386 1.04432 1.04065 1.20552 0.98811 0.91448 1.00900 1.21399 0.91042 0.99546 0.95263 1.19785 0.94832 0.92179 1.08899 1.18390 0.86714 0.84663 0.75307 1.90784 1.15597 1.88153 1.51901 1.45396 1.10794 1.04016 1.73772 1.21919 0.96834 0.82544 0.97993 0.89690 1.23345 0.99865 0.96412 0.96215 1.21672 0.98836 0.91595 0.96396 0.86533 1.19682 0.92839 0.95521 1.00118 1.20095 0.95662 0.94725 0.98883 1.20916 0.94143 0.99249 1.03143 1.21314 0.99206 0.93794 1.00822 1.21414 0.92956 1.00677 0.99978 1.21379 0.98391 0.95654 1.00135 1.21201 0.98693 0.94011 1.00313 1.23566 0.98671 0.99014 0.97027 1.20975 0.99301 0.92176 0.97596 1.19922 0.94210 0.94214 1.04405 1.24467 1.09120 0.93582 0.89769 1.86483 1.79746 1.42095 1.28586 0.94778 0.76600 0.85817 0.75665 1.18386 0.88175 0.86367 0.95358 1.84733 1.75103 1.35159 1.35179 0.89041 0.90868 0.89452 0.81362 0.74444 0.88967 0.88181 0.90183 0.90325 0.91162 0.85000 0.85008 0.85103 0.85272 0.88620 0.91618 0.87064 0.87884 0.74597 1.21797 1.23736 0.72490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.71 9.79 71.23 0.70 1.41 16 2 C -0.12 0.09 5.89 -19.81 -0.12 -0.03 16 3 C -0.05 0.05 9.18 22.50 0.21 0.26 16 4 C -0.15 -1.05 5.87 -20.08 -0.12 -1.17 16 5 C 0.56 5.21 7.76 86.71 0.67 5.88 16 6 O -0.58 -11.03 15.94 -3.99 -0.06 -11.09 16 7 N -0.69 -0.51 5.21 -443.12 -2.31 -2.82 16 8 C 0.11 0.13 4.32 45.51 0.20 0.33 16 9 H 0.08 0.52 7.46 -2.38 -0.02 0.50 16 10 C -0.12 0.42 7.29 31.12 0.23 0.64 16 11 C -0.07 0.19 3.58 -11.01 -0.04 0.15 16 12 H 0.12 -0.70 5.76 -2.39 -0.01 -0.71 16 13 C -0.08 -0.07 5.29 -19.86 -0.11 -0.18 16 14 C -0.09 -0.09 5.88 -19.87 -0.12 -0.21 16 15 C -0.12 0.47 9.53 71.24 0.68 1.15 16 16 C -0.13 -0.24 9.70 22.27 0.22 -0.03 16 17 C -0.13 -0.29 10.05 22.27 0.22 -0.07 16 18 C -0.14 -0.32 10.05 22.27 0.22 -0.10 16 19 C -0.12 -0.24 8.61 22.27 0.19 -0.04 16 20 C -0.14 -0.06 7.25 31.12 0.23 0.17 16 21 C -0.08 -0.87 8.20 22.51 0.18 -0.68 16 22 C -0.13 -0.81 5.30 -19.81 -0.11 -0.92 16 23 C -0.06 -0.10 2.36 71.24 0.17 0.07 16 24 O -0.56 -1.59 12.86 -148.98 -1.92 -3.51 16 25 Si 0.76 2.10 30.18 68.60 2.07 4.17 16 26 C 0.16 0.42 6.66 22.63 0.15 0.57 16 27 O -0.49 0.48 11.84 -90.37 -1.07 -0.59 16 28 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H 0.07 -0.33 7.52 -2.39 -0.02 -0.34 16 30 H 0.09 -0.79 8.08 -2.39 -0.02 -0.81 16 31 H 0.17 -1.54 6.40 -2.91 -0.02 -1.56 16 32 H 0.42 -2.71 6.72 -92.71 -0.62 -3.34 16 33 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 34 H 0.10 -0.30 7.72 -2.39 -0.02 -0.32 16 35 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H 0.08 -0.48 5.99 -2.39 -0.01 -0.50 16 37 H 0.07 -0.31 8.09 -2.38 -0.02 -0.33 16 38 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 39 H 0.13 -0.13 8.06 -2.91 -0.02 -0.16 16 40 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 41 H 0.13 -0.06 6.66 -2.91 -0.02 -0.08 16 42 H 0.10 0.05 6.31 -2.38 -0.02 0.04 16 43 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.11 1.70 4.47 -2.91 -0.01 1.69 16 45 H 0.10 -0.47 7.82 -2.39 -0.02 -0.49 16 46 H 0.40 -3.22 8.74 -74.06 -0.65 -3.87 16 47 H -0.29 -2.50 7.11 99.48 0.71 -1.79 16 48 H -0.31 -4.05 6.76 99.48 0.67 -3.38 16 49 H 0.41 -4.54 9.06 -74.06 -0.67 -5.21 16 Total: 0.00 -28.85 396.00 -0.54 -29.39 By element: Atomic # 1 Polarization: -21.84 SS G_CDS: -0.92 Total: -22.75 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 3.66 Total: 7.20 kcal Atomic # 7 Polarization: -0.51 SS G_CDS: -2.31 Total: -2.82 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -3.05 Total: -15.19 kcal Atomic # 14 Polarization: 2.10 SS G_CDS: 2.07 Total: 4.17 kcal Total: -28.85 -0.54 -29.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_13287732.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.112 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds