Wall clock time and date at job start Tue Mar 9 2021 13:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36412 * 125.80173 * 2 1 4 4 C 1.47386 * 127.19002 * 359.97438 * 3 2 1 5 5 O 1.21619 * 119.99945 * 359.43497 * 4 3 2 6 6 N 1.34777 * 119.99954 * 179.70540 * 4 3 2 7 7 C 1.46496 * 119.99875 * 179.97438 * 6 4 3 8 8 H 1.09001 * 112.85351 * 334.67343 * 7 6 4 9 9 C 1.53787 * 113.61045 * 105.86724 * 7 6 4 10 10 C 1.54050 * 86.98492 * 89.16017 * 9 7 6 11 11 H 1.09002 * 113.61629 * 270.88180 * 10 9 7 12 12 C 1.50703 * 113.69513 * 139.98514 * 10 9 7 13 13 C 1.38213 * 119.99857 * 142.46784 * 12 10 9 14 14 C 1.50700 * 120.00142 * 359.97438 * 13 12 10 15 15 C 1.38257 * 119.99785 * 180.02562 * 13 12 10 16 16 C 1.38204 * 120.00390 * 359.97438 * 15 13 12 17 17 C 1.38264 * 120.00146 * 359.95140 * 16 15 13 18 18 C 1.38215 * 119.99264 * 359.86258 * 17 16 15 19 19 C 1.53785 * 113.61522 * 203.47236 * 7 6 4 20 20 C 1.47023 * 105.61687 * 179.72117 * 3 2 1 21 21 C 1.34177 * 105.95056 * 0.26237 * 20 3 2 22 22 C 1.50700 * 125.43343 * 180.02562 * 21 20 3 23 23 O 1.42905 * 109.46952 * 299.99520 * 22 21 20 24 24 Si 1.86298 * 109.47041 * 179.97438 * 22 21 20 25 25 O 1.33649 * 125.80207 * 180.17323 * 2 1 3 26 26 H 1.09002 * 109.47280 * 90.00180 * 1 2 3 27 27 H 1.09000 * 109.46909 * 209.99587 * 1 2 3 28 28 H 1.08994 * 109.47289 * 329.99491 * 1 2 3 29 29 H 0.96999 * 120.00043 * 0.02562 * 6 4 3 30 30 H 1.09002 * 113.61105 * 203.65930 * 9 7 6 31 31 H 1.09000 * 113.61439 * 334.56581 * 9 7 6 32 32 H 1.08999 * 109.47243 * 89.99863 * 14 13 12 33 33 H 1.09000 * 109.47266 * 210.00238 * 14 13 12 34 34 H 1.09001 * 109.47220 * 330.00194 * 14 13 12 35 35 H 1.08000 * 119.99819 * 179.97438 * 15 13 12 36 36 H 1.08005 * 120.00617 * 179.97438 * 16 15 13 37 37 H 1.07992 * 120.00123 * 180.02562 * 17 16 15 38 38 H 1.08002 * 119.99467 * 180.20828 * 18 17 16 39 39 H 1.09007 * 113.61123 * 25.43328 * 19 7 6 40 40 H 1.08998 * 113.61306 * 156.33617 * 19 7 6 41 41 H 1.07995 * 127.02239 * 180.26787 * 20 3 2 42 42 H 1.08998 * 109.47444 * 59.99413 * 22 21 20 43 43 H 0.96698 * 113.99918 * 300.00472 * 23 22 21 44 44 H 1.48500 * 109.99828 * 179.97438 * 24 22 21 45 45 H 1.48496 * 110.00084 * 301.31442 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1064 0.0000 4 6 1.8739 2.5158 -0.0005 5 8 0.6889 2.7892 -0.0114 6 7 2.7929 3.5016 0.0056 7 6 2.3644 4.9025 0.0045 8 1 1.3748 5.0421 -0.4306 9 6 2.5450 5.6029 1.3616 10 6 3.9611 5.9801 0.8866 11 1 4.7165 5.2325 1.1285 12 6 4.3765 7.3771 1.2702 13 6 5.6822 7.6313 1.6452 14 6 6.6904 6.5115 1.6711 15 6 6.0631 8.9128 1.9977 16 6 5.1385 9.9396 1.9746 17 6 3.8326 9.6857 1.5979 18 6 3.4527 8.4053 1.2419 19 6 3.4232 5.8702 -0.5499 20 6 3.6849 0.5991 0.0069 21 6 3.5859 -0.7390 0.0044 22 6 4.7459 -1.7010 0.0100 23 8 5.5495 -1.4849 -1.1518 24 14 4.1027 -3.4494 0.0044 25 8 2.2889 -1.0839 -0.0033 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 3.7381 3.2835 0.0099 30 1 1.8880 6.4614 1.5007 31 1 2.5354 4.9192 2.2105 32 1 7.1765 6.4377 0.6982 33 1 7.4391 6.7143 2.4369 34 1 6.1849 5.5726 1.8968 35 1 7.0834 9.1114 2.2911 36 1 5.4359 10.9406 2.2503 37 1 3.1101 10.4882 1.5795 38 1 2.4335 8.2076 0.9445 39 1 4.1222 5.4020 -1.2432 40 1 3.0058 6.8015 -0.9325 41 1 4.5928 1.1840 0.0128 42 1 5.3483 -1.5386 0.9037 43 1 5.0771 -1.6122 -1.9860 44 1 5.2370 -4.4078 0.0092 45 1 3.2400 -3.6770 1.1914 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_13308374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:58 Heat of formation + Delta-G solvation = 2.103278 kcal Electronic energy + Delta-G solvation = -27249.212500 eV Core-core repulsion = 23393.750661 eV Total energy + Delta-G solvation = -3855.461839 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.151 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.77964 -41.60678 -40.30668 -38.74658 -37.99403 -34.81889 -34.03872 -33.67601 -33.05997 -31.58166 -29.39612 -27.88289 -26.72594 -26.55293 -25.61533 -24.33580 -23.08828 -22.24156 -21.84641 -20.80494 -19.97975 -18.95843 -18.06579 -17.75300 -17.53253 -16.98390 -16.73609 -16.53870 -16.09995 -15.91181 -15.76176 -15.63818 -15.00342 -14.97457 -14.81132 -14.43393 -14.26633 -14.13466 -13.97462 -13.93517 -13.83307 -13.60597 -13.44019 -13.19479 -12.88282 -12.83241 -12.76767 -12.70068 -12.25303 -12.06048 -11.73204 -11.52286 -11.19318 -11.14429 -10.94673 -10.61975 -10.14377 -9.68323 -9.58113 -9.43202 -5.00415 0.21521 0.42459 0.47491 0.82049 1.17993 1.39524 1.75945 1.91257 2.08760 2.21473 2.79419 3.21495 3.44588 3.47277 3.65271 3.68545 3.74676 3.78019 3.93064 4.00411 4.05564 4.10502 4.16222 4.24198 4.31541 4.40816 4.45442 4.57881 4.59989 4.60452 4.65801 4.73621 4.75504 4.79899 4.82808 4.87282 4.92919 4.98159 4.99779 5.11180 5.17217 5.18770 5.21056 5.31915 5.51829 5.62679 5.63465 5.77922 5.88902 6.13645 6.45740 6.62757 7.13525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.086 3.914 3 C -0.269 4.269 4 C 0.591 3.409 5 O -0.572 6.572 6 N -0.694 5.694 7 C 0.119 3.881 8 H 0.090 0.910 9 C -0.142 4.142 10 C -0.069 4.069 11 H 0.111 0.889 12 C -0.081 4.081 13 C -0.096 4.096 14 C -0.118 4.118 15 C -0.134 4.134 16 C -0.133 4.133 17 C -0.137 4.137 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.147 4.147 21 C -0.060 4.060 22 C -0.022 4.022 23 O -0.539 6.539 24 Si 0.774 3.226 25 O -0.172 6.172 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.412 0.588 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.177 0.823 42 H 0.139 0.861 43 H 0.400 0.600 44 H -0.279 1.279 45 H -0.296 1.296 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.289 -0.987 -2.293 3.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.033 3.967 3 C -0.273 4.273 4 C 0.381 3.619 5 O -0.454 6.454 6 N -0.345 5.345 7 C 0.014 3.986 8 H 0.108 0.892 9 C -0.181 4.181 10 C -0.087 4.087 11 H 0.129 0.871 12 C -0.081 4.081 13 C -0.096 4.096 14 C -0.174 4.174 15 C -0.152 4.152 16 C -0.151 4.151 17 C -0.155 4.155 18 C -0.141 4.141 19 C -0.160 4.160 20 C -0.166 4.166 21 C -0.108 4.108 22 C -0.133 4.133 23 O -0.347 6.347 24 Si 0.679 3.321 25 O -0.069 6.069 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.249 0.751 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.105 0.895 40 H 0.119 0.881 41 H 0.194 0.806 42 H 0.156 0.844 43 H 0.251 0.749 44 H -0.206 1.206 45 H -0.223 1.223 Dipole moment (debyes) X Y Z Total from point charges 1.813 -1.727 -1.458 2.897 hybrid contribution 0.582 0.890 0.590 1.216 sum 2.395 -0.836 -0.868 2.681 Atomic orbital electron populations 1.20709 0.82596 1.05368 1.05413 1.23223 0.94774 0.82995 0.95749 1.21184 0.94285 0.93354 1.18510 1.17365 0.85186 0.84384 0.74994 1.90760 1.17925 1.84505 1.52187 1.45348 1.09943 1.04824 1.74369 1.21839 0.99386 0.79895 0.97518 0.89208 1.23597 0.96712 1.00598 0.97193 1.21705 0.96893 0.93547 0.96587 0.87144 1.19703 0.93118 0.95419 0.99876 1.20082 0.94859 0.95633 0.98992 1.20902 0.97292 0.96219 1.03014 1.21300 1.00269 0.92742 1.00885 1.21410 0.93800 0.99851 1.00013 1.21393 0.96759 0.97415 0.99885 1.21210 0.99971 0.92696 1.00190 1.23342 0.97351 0.99433 0.95923 1.22778 0.96339 0.93652 1.03854 1.22919 0.82870 0.96033 1.08973 1.24425 0.89232 1.06867 0.92765 1.86534 1.38609 1.93324 1.16211 0.93275 0.78912 0.72543 0.87341 1.83675 1.16784 1.34966 1.71450 0.87908 0.88474 0.88662 0.75070 0.88522 0.91767 0.90373 0.91210 0.90529 0.85137 0.85001 0.84942 0.84994 0.89500 0.88112 0.80553 0.84395 0.74923 1.20580 1.22296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.02 9.88 71.24 0.70 0.69 16 2 C 0.09 0.28 7.37 25.26 0.19 0.47 16 3 C -0.27 -1.00 6.31 -18.99 -0.12 -1.12 16 4 C 0.59 3.53 7.81 86.65 0.68 4.21 16 5 O -0.57 -7.05 14.47 -4.09 -0.06 -7.11 16 6 N -0.69 -0.06 5.26 -443.32 -2.33 -2.40 16 7 C 0.12 0.00 4.30 45.52 0.20 0.20 16 8 H 0.09 0.33 7.50 -2.39 -0.02 0.32 16 9 C -0.14 0.05 7.27 31.21 0.23 0.27 16 10 C -0.07 0.16 3.58 -10.92 -0.04 0.12 16 11 H 0.11 -0.48 5.76 -2.39 -0.01 -0.50 16 12 C -0.08 -0.10 5.29 -19.87 -0.11 -0.20 16 13 C -0.10 -0.16 5.88 -19.87 -0.12 -0.28 16 14 C -0.12 0.31 9.53 71.24 0.68 0.99 16 15 C -0.13 -0.31 9.70 22.27 0.22 -0.09 16 16 C -0.13 -0.30 10.05 22.27 0.22 -0.08 16 17 C -0.14 -0.28 10.05 22.27 0.22 -0.06 16 18 C -0.12 -0.20 8.60 22.27 0.19 -0.01 16 19 C -0.12 0.41 7.29 31.12 0.23 0.64 16 20 C -0.15 0.07 10.46 23.65 0.25 0.31 16 21 C -0.06 0.03 6.20 24.76 0.15 0.18 16 22 C -0.02 0.08 2.97 71.24 0.21 0.29 16 23 O -0.54 2.22 12.86 -148.98 -1.92 0.30 16 24 Si 0.77 -2.24 32.09 68.60 2.20 -0.04 16 25 O -0.17 -0.32 8.89 4.52 0.04 -0.28 16 26 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 27 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 28 H 0.09 0.36 6.50 -2.39 -0.02 0.34 16 29 H 0.41 -1.99 7.88 -92.71 -0.73 -2.72 16 30 H 0.10 -0.06 6.34 -2.39 -0.02 -0.07 16 31 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 33 H 0.07 -0.23 8.09 -2.39 -0.02 -0.24 16 34 H 0.08 -0.34 5.99 -2.39 -0.01 -0.35 16 35 H 0.13 -0.09 8.06 -2.91 -0.02 -0.12 16 36 H 0.13 -0.13 8.06 -2.91 -0.02 -0.15 16 37 H 0.13 -0.16 8.06 -2.91 -0.02 -0.18 16 38 H 0.13 -0.16 6.68 -2.91 -0.02 -0.18 16 39 H 0.09 -0.43 8.14 -2.38 -0.02 -0.45 16 40 H 0.10 -0.33 7.71 -2.39 -0.02 -0.35 16 41 H 0.18 -0.92 7.74 -2.91 -0.02 -0.94 16 42 H 0.14 -0.63 7.96 -2.39 -0.02 -0.65 16 43 H 0.40 -4.58 8.70 -74.06 -0.64 -5.22 16 44 H -0.28 -0.72 7.11 99.48 0.71 -0.01 16 45 H -0.30 -1.29 7.11 99.48 0.71 -0.58 16 Total: 0.00 -17.45 372.06 1.61 -15.84 By element: Atomic # 1 Polarization: -12.55 SS G_CDS: -0.30 Total: -12.85 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 3.98 Total: 6.54 kcal Atomic # 7 Polarization: -0.06 SS G_CDS: -2.33 Total: -2.40 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -1.94 Total: -7.09 kcal Atomic # 14 Polarization: -2.24 SS G_CDS: 2.20 Total: -0.04 kcal Total: -17.45 1.61 -15.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_13308374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.945 kcal (2) G-P(sol) polarization free energy of solvation -17.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds