Wall clock time and date at job start Tue Mar 9 2021 13:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38207 * 120.00352 * 2 1 4 4 C 1.50701 * 119.99822 * 359.97438 * 3 2 1 5 5 H 1.08999 * 112.85045 * 9.64428 * 4 3 2 6 6 C 1.53786 * 113.61351 * 140.84313 * 4 3 2 7 7 C 1.53961 * 87.01934 * 139.94984 * 6 4 3 8 8 H 1.08999 * 113.66430 * 220.06405 * 7 6 4 9 9 N 1.46501 * 113.61171 * 89.19710 * 7 6 4 10 10 C 1.34778 * 119.99959 * 107.46935 * 9 7 6 11 11 O 1.21596 * 119.99835 * 359.97438 * 10 9 7 12 12 C 1.47554 * 120.00131 * 179.97438 * 10 9 7 13 13 C 1.39835 * 120.00155 * 359.72959 * 12 10 9 14 14 C 1.36562 * 119.99889 * 179.69231 * 13 12 10 15 15 C 1.39817 * 120.00065 * 0.60035 * 14 13 12 16 16 C 1.47555 * 120.00116 * 179.69658 * 15 14 13 17 17 C 1.34987 * 125.27555 * 359.69284 * 16 15 14 18 18 C 1.37798 * 114.70064 * 179.85928 * 17 16 15 19 19 C 1.33743 * 115.08200 * 0.43218 * 18 17 16 20 20 C 1.50693 * 125.11793 * 179.79922 * 19 18 17 21 21 O 1.42905 * 109.47649 * 299.98642 * 20 19 18 22 22 Si 1.86303 * 109.47168 * 179.97438 * 20 19 18 23 23 S 1.75858 * 109.76192 * 359.77084 * 19 18 17 24 24 C 1.39826 * 120.00425 * 359.67333 * 15 14 13 25 25 C 1.36563 * 119.99990 * 0.02562 * 24 15 14 26 26 C 1.53780 * 113.61127 * 238.44733 * 4 3 2 27 27 C 1.38255 * 120.00357 * 179.97438 * 3 2 1 28 28 C 1.38220 * 119.99681 * 359.97438 * 27 3 2 29 29 C 1.38254 * 120.00045 * 0.07174 * 28 27 3 30 30 C 1.38204 * 119.99843 * 359.88536 * 29 28 27 31 31 H 1.08996 * 109.47441 * 89.99998 * 1 2 3 32 32 H 1.09003 * 109.47255 * 210.00411 * 1 2 3 33 33 H 1.09001 * 109.46747 * 329.99800 * 1 2 3 34 34 H 1.08998 * 113.60972 * 254.52787 * 6 4 3 35 35 H 1.08996 * 113.61549 * 25.43277 * 6 4 3 36 36 H 0.97003 * 119.99948 * 287.46848 * 9 7 6 37 37 H 1.08006 * 119.99922 * 359.97438 * 13 12 10 38 38 H 1.08004 * 119.99856 * 180.29275 * 14 13 12 39 39 H 1.07993 * 122.64874 * 0.02562 * 17 16 15 40 40 H 1.08002 * 122.45899 * 180.17079 * 18 17 16 41 41 H 1.08998 * 109.47405 * 59.98814 * 20 19 18 42 42 H 0.96696 * 113.99657 * 300.00036 * 21 20 19 43 43 H 1.48502 * 109.99806 * 58.68406 * 22 20 19 44 44 H 1.48500 * 110.00122 * 180.02562 * 22 20 19 45 45 H 1.07992 * 120.00259 * 180.02562 * 24 15 14 46 46 H 1.07994 * 120.00216 * 179.97438 * 25 24 15 47 47 H 1.09001 * 113.61992 * 334.57039 * 26 4 3 48 48 H 1.09001 * 113.61500 * 105.38854 * 26 4 3 49 49 H 1.08000 * 120.00604 * 179.72567 * 27 3 2 50 50 H 1.08002 * 119.99604 * 180.02562 * 28 27 3 51 51 H 1.08005 * 119.99925 * 180.02562 * 29 28 27 52 52 H 1.08012 * 119.99953 * 180.10836 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1969 0.0000 4 6 1.4446 2.5020 -0.0006 5 1 0.3753 2.3735 0.1673 6 6 2.0825 3.5820 0.8892 7 6 1.7350 4.5890 -0.2223 8 1 2.5144 5.3298 -0.4008 9 7 0.4049 5.1859 -0.0784 10 6 0.2813 6.4717 0.3065 11 8 1.2738 7.1360 0.5348 12 6 -1.0583 7.0731 0.4509 13 6 -2.1996 6.3108 0.1830 14 6 -3.4396 6.8656 0.3227 15 6 -3.5678 8.1995 0.7216 16 6 -4.9074 8.8009 0.8661 17 6 -6.0760 8.1657 0.6361 18 6 -7.2002 8.9355 0.8420 19 6 -6.9627 10.1937 1.2284 20 6 -8.0214 11.2281 1.5114 21 8 -8.8041 11.4430 0.3353 22 14 -7.2085 12.8263 2.0172 23 16 -5.2290 10.4589 1.3573 24 6 -2.4265 8.9635 0.9840 25 6 -1.1866 8.4071 0.8503 26 6 1.7757 3.4038 -1.2014 27 6 3.5806 1.1969 0.0005 28 6 4.2717 -0.0002 0.0016 29 6 3.5803 -1.1975 0.0006 30 6 2.1983 -1.1974 0.0010 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5139 34 1 1.5433 3.7549 1.8205 35 1 3.1540 3.4484 1.0378 36 1 -0.3869 4.6558 -0.2602 37 1 -2.1005 5.2818 -0.1301 38 1 -4.3212 6.2754 0.1203 39 1 -6.1261 7.1347 0.3185 40 1 -8.1996 8.5524 0.6977 41 1 -8.6657 10.8774 2.3176 42 1 -8.2945 11.7567 -0.4243 43 1 -6.3027 13.2987 0.9395 44 1 -8.2420 13.8546 2.2998 45 1 -2.5255 9.9937 1.2925 46 1 -0.3051 8.9973 1.0526 47 1 2.7631 3.2214 -1.6254 48 1 0.9897 3.4320 -1.9561 49 1 4.1207 2.1321 -0.0039 50 1 5.3517 -0.0002 0.0024 51 1 4.1203 -2.1328 0.0019 52 1 1.6582 -2.1327 0.0020 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_13308390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:01 Heat of formation + Delta-G solvation = 51.849975 kcal Electronic energy + Delta-G solvation = -33227.753282 eV Core-core repulsion = 28830.077120 eV Total energy + Delta-G solvation = -4397.676162 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.139 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.81326 -40.92596 -39.92647 -39.15974 -38.61669 -37.46573 -34.87003 -33.76911 -33.36431 -32.28445 -31.53893 -30.40553 -27.88557 -27.33730 -26.70350 -26.07458 -24.73532 -23.97707 -23.51140 -22.93568 -21.84686 -21.80718 -20.27631 -20.13478 -19.19528 -18.68594 -17.71827 -17.64726 -17.08856 -16.68739 -16.55566 -16.32259 -16.17681 -16.16787 -15.98643 -15.85777 -15.50238 -15.09350 -14.98623 -14.86029 -14.62668 -14.44594 -14.36407 -14.17409 -13.95237 -13.79856 -13.66362 -13.62167 -13.42469 -13.27169 -13.16391 -13.08389 -12.80609 -12.69745 -12.54137 -12.41913 -12.08927 -12.02927 -11.71209 -11.51841 -11.49938 -11.16553 -11.13411 -10.87193 -10.64871 -10.18344 -10.15003 -9.66056 -9.54436 -9.40954 -9.02372 -5.08553 -0.88555 0.25600 0.34750 0.39895 0.44550 0.49497 0.77270 1.20647 1.52551 1.56309 1.84549 1.95724 2.00139 2.80893 2.83504 3.30854 3.41659 3.46477 3.64510 3.67659 3.70401 3.74894 3.76162 3.85312 3.95730 4.02756 4.07990 4.18902 4.20855 4.25873 4.32196 4.42035 4.43362 4.52633 4.55856 4.60263 4.62559 4.65628 4.75986 4.82086 4.83638 4.87942 4.92758 4.95459 5.00742 5.01514 5.03231 5.11448 5.15176 5.20602 5.23643 5.29724 5.33065 5.35334 5.49287 5.51125 5.64550 5.65404 5.74096 5.80092 6.15822 6.37477 6.43881 7.11350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.080 4.080 4 C -0.068 4.068 5 H 0.117 0.883 6 C -0.143 4.143 7 C 0.116 3.884 8 H 0.085 0.915 9 N -0.693 5.693 10 C 0.559 3.441 11 O -0.580 6.580 12 C -0.150 4.150 13 C -0.067 4.067 14 C -0.108 4.108 15 C 0.007 3.993 16 C -0.160 4.160 17 C -0.116 4.116 18 C -0.110 4.110 19 C -0.218 4.218 20 C -0.033 4.033 21 O -0.539 6.539 22 Si 0.708 3.292 23 S 0.121 5.879 24 C -0.129 4.129 25 C -0.064 4.064 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.138 4.138 29 C -0.133 4.133 30 C -0.135 4.135 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.415 0.585 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.140 0.860 42 H 0.388 0.612 43 H -0.267 1.267 44 H -0.272 1.272 45 H 0.134 0.866 46 H 0.128 0.872 47 H 0.098 0.902 48 H 0.090 0.910 49 H 0.130 0.870 50 H 0.131 0.869 51 H 0.131 0.869 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.509 -4.722 -0.394 5.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.080 4.080 4 C -0.086 4.086 5 H 0.135 0.865 6 C -0.181 4.181 7 C 0.010 3.990 8 H 0.104 0.896 9 N -0.344 5.344 10 C 0.349 3.651 11 O -0.461 6.461 12 C -0.154 4.154 13 C -0.085 4.085 14 C -0.128 4.128 15 C 0.005 3.995 16 C -0.277 4.277 17 C -0.146 4.146 18 C -0.140 4.140 19 C -0.336 4.336 20 C -0.145 4.145 21 O -0.347 6.347 22 Si 0.610 3.390 23 S 0.389 5.611 24 C -0.147 4.147 25 C -0.083 4.083 26 C -0.161 4.161 27 C -0.141 4.141 28 C -0.156 4.156 29 C -0.151 4.151 30 C -0.153 4.153 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.254 0.746 37 H 0.181 0.819 38 H 0.179 0.821 39 H 0.184 0.816 40 H 0.172 0.828 41 H 0.157 0.843 42 H 0.237 0.763 43 H -0.192 1.192 44 H -0.197 1.197 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.116 0.884 48 H 0.108 0.892 49 H 0.148 0.852 50 H 0.149 0.851 51 H 0.149 0.851 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.282 -2.335 0.374 3.286 hybrid contribution -0.911 -1.289 -1.454 2.146 sum -3.193 -3.624 -1.080 4.950 Atomic orbital electron populations 1.20913 0.89885 1.03540 1.03104 1.20096 0.97263 0.92579 0.99465 1.19699 0.93531 0.94405 1.00402 1.21686 1.00277 0.89792 0.96881 0.86528 1.23577 1.02047 0.94869 0.97638 1.21896 0.85053 0.94534 0.97521 0.89637 1.45442 1.09322 1.11302 1.68376 1.18489 0.88865 0.81921 0.75865 1.90787 1.40557 1.62712 1.52005 1.19996 0.92761 0.95678 1.06942 1.21261 0.90679 1.00610 0.95998 1.21197 0.98906 0.93466 0.99211 1.18466 0.89622 0.94217 0.97221 1.23174 0.96266 0.97839 1.10385 1.20642 0.89880 1.02482 1.01613 1.20190 1.00888 0.92410 1.00539 1.25091 0.96987 1.00400 1.11126 1.24443 0.94899 1.03819 0.91367 1.86600 1.37873 1.87962 1.22278 0.94475 0.80894 0.75985 0.87600 1.84230 1.00424 1.10081 1.66395 1.21028 0.91489 1.00540 1.01683 1.20944 0.97989 0.94093 0.95252 1.23352 1.04075 0.92499 0.96208 1.21204 0.94090 0.98521 1.00328 1.21378 1.00699 0.92731 1.00781 1.21398 0.94744 0.98752 1.00220 1.21314 0.94585 0.98278 1.01090 0.90276 0.91237 0.90185 0.91381 0.88821 0.74579 0.81947 0.82120 0.81561 0.82799 0.84276 0.76288 1.19231 1.19733 0.84857 0.85364 0.88395 0.89171 0.85182 0.85148 0.85131 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.55 9.52 71.23 0.68 1.23 16 2 C -0.09 -0.03 5.88 -19.87 -0.12 -0.14 16 3 C -0.08 0.00 5.29 -19.87 -0.11 -0.10 16 4 C -0.07 0.28 3.58 -11.01 -0.04 0.24 16 5 H 0.12 -0.85 5.75 -2.39 -0.01 -0.86 16 6 C -0.14 0.21 7.27 31.18 0.23 0.44 16 7 C 0.12 -0.10 4.33 45.58 0.20 0.09 16 8 H 0.09 0.33 7.46 -2.39 -0.02 0.32 16 9 N -0.69 1.38 5.21 -442.87 -2.31 -0.93 16 10 C 0.56 2.82 7.76 86.70 0.67 3.49 16 11 O -0.58 -8.19 15.93 -4.02 -0.06 -8.25 16 12 C -0.15 -0.26 5.88 -20.05 -0.12 -0.38 16 13 C -0.07 0.33 9.48 22.26 0.21 0.54 16 14 C -0.11 0.50 9.48 22.26 0.21 0.71 16 15 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 16 C -0.16 0.09 6.37 23.98 0.15 0.24 16 17 C -0.12 0.34 9.64 21.42 0.21 0.54 16 18 C -0.11 0.22 10.00 21.14 0.21 0.43 16 19 C -0.22 0.27 5.73 24.66 0.14 0.41 16 20 C -0.03 0.06 2.96 71.23 0.21 0.27 16 21 O -0.54 -0.38 12.86 -148.98 -1.92 -2.29 16 22 Si 0.71 -1.01 30.96 68.60 2.12 1.11 16 23 S 0.12 -0.06 19.46 -56.49 -1.10 -1.16 16 24 C -0.13 -0.19 9.54 22.26 0.21 0.02 16 25 C -0.06 -0.24 9.53 22.26 0.21 -0.02 16 26 C -0.12 0.57 7.29 31.12 0.23 0.80 16 27 C -0.12 -0.12 8.53 22.27 0.19 0.07 16 28 C -0.14 -0.23 10.05 22.27 0.22 -0.01 16 29 C -0.13 -0.23 10.05 22.27 0.22 -0.01 16 30 C -0.13 -0.18 9.70 22.27 0.22 0.03 16 31 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.07 -0.35 8.09 -2.39 -0.02 -0.37 16 33 H 0.08 -0.56 6.00 -2.39 -0.01 -0.58 16 34 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.09 -0.10 6.40 -2.39 -0.02 -0.11 16 36 H 0.42 -3.65 6.71 -92.71 -0.62 -4.27 16 37 H 0.16 -2.00 6.38 -2.91 -0.02 -2.02 16 38 H 0.16 -1.64 6.74 -2.91 -0.02 -1.66 16 39 H 0.17 -1.33 6.88 -2.91 -0.02 -1.35 16 40 H 0.15 -0.59 8.06 -2.91 -0.02 -0.62 16 41 H 0.14 -0.59 7.96 -2.39 -0.02 -0.61 16 42 H 0.39 -1.71 8.70 -74.06 -0.64 -2.35 16 43 H -0.27 -0.74 7.11 99.48 0.71 -0.04 16 44 H -0.27 -1.28 7.11 99.48 0.71 -0.57 16 45 H 0.13 -0.02 7.26 -2.91 -0.02 -0.04 16 46 H 0.13 0.70 7.64 -2.91 -0.02 0.68 16 47 H 0.10 -0.38 7.63 -2.39 -0.02 -0.40 16 48 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 49 H 0.13 -0.20 6.73 -2.91 -0.02 -0.22 16 50 H 0.13 -0.16 8.06 -2.91 -0.02 -0.19 16 51 H 0.13 -0.17 8.06 -2.91 -0.02 -0.20 16 52 H 0.13 -0.22 8.06 -2.90 -0.02 -0.24 16 Total: 0.00 -20.25 435.36 0.62 -19.63 By element: Atomic # 1 Polarization: -16.62 SS G_CDS: -0.24 Total: -16.86 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 4.13 Total: 8.76 kcal Atomic # 7 Polarization: 1.38 SS G_CDS: -2.31 Total: -0.93 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -1.98 Total: -10.55 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: 2.12 Total: 1.11 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.10 Total: -1.16 kcal Total: -20.25 0.62 -19.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_13308390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.478 kcal (2) G-P(sol) polarization free energy of solvation -20.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds