Wall clock time and date at job start Tue Mar 9 2021 13:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38220 * 119.99799 * 2 1 4 4 C 1.50694 * 119.99903 * 359.97438 * 3 2 1 5 5 H 1.08998 * 112.85501 * 11.19459 * 4 3 2 6 6 C 1.53782 * 113.61234 * 142.50421 * 4 3 2 7 7 C 1.53781 * 87.08325 * 139.98013 * 6 4 3 8 8 H 1.09000 * 113.69167 * 220.00542 * 7 6 4 9 9 N 1.46496 * 113.61499 * 89.11324 * 7 6 4 10 10 C 1.34777 * 119.99792 * 107.50485 * 9 7 6 11 11 O 1.21587 * 120.00365 * 359.97438 * 10 9 7 12 12 C 1.47526 * 119.99864 * 179.97438 * 10 9 7 13 13 C 1.39778 * 120.06877 * 180.02562 * 12 10 9 14 14 C 1.37627 * 119.92923 * 179.70279 * 13 12 10 15 15 C 1.50699 * 119.96583 * 180.29654 * 14 13 12 16 16 O 1.42899 * 109.47064 * 255.25705 * 15 14 13 17 17 Si 1.86306 * 109.47251 * 15.25615 * 15 14 13 18 18 C 1.39201 * 120.06632 * 0.55344 * 14 13 12 19 19 N 1.39045 * 119.92603 * 179.72114 * 18 14 13 20 20 C 1.46901 * 110.99982 * 119.72822 * 19 18 14 21 21 C 1.46905 * 110.99975 * 243.68013 * 19 18 14 22 22 C 1.39237 * 120.14126 * 359.44839 * 18 14 13 23 23 C 1.37589 * 120.06570 * 0.27160 * 22 18 14 24 24 C 1.53778 * 113.61332 * 239.99651 * 4 3 2 25 25 C 1.38262 * 119.99812 * 180.25214 * 3 2 1 26 26 C 1.38214 * 119.99563 * 359.54220 * 25 3 2 27 27 C 1.38247 * 120.00579 * 0.41444 * 26 25 3 28 28 C 1.38219 * 120.00010 * 359.81286 * 27 26 25 29 29 H 1.08994 * 109.47225 * 89.99458 * 1 2 3 30 30 H 1.09001 * 109.46830 * 209.99815 * 1 2 3 31 31 H 1.08998 * 109.46958 * 329.99809 * 1 2 3 32 32 H 1.08997 * 113.61857 * 25.42457 * 6 4 3 33 33 H 1.09005 * 113.61474 * 254.52894 * 6 4 3 34 34 H 0.97002 * 120.00160 * 287.50722 * 9 7 6 35 35 H 1.08006 * 120.03569 * 359.97438 * 13 12 10 36 36 H 1.08998 * 109.47178 * 135.25793 * 15 14 13 37 37 H 0.96705 * 114.00172 * 179.97438 * 16 15 14 38 38 H 1.48501 * 109.99708 * 300.00340 * 17 15 14 39 39 H 1.48502 * 109.99718 * 61.31557 * 17 15 14 40 40 H 1.09000 * 109.46890 * 59.99505 * 20 19 18 41 41 H 1.09000 * 109.47566 * 179.97438 * 20 19 18 42 42 H 1.08999 * 109.46847 * 300.00323 * 20 19 18 43 43 H 1.08998 * 109.46887 * 59.99847 * 21 19 18 44 44 H 1.09001 * 109.46979 * 180.02562 * 21 19 18 45 45 H 1.09006 * 109.46820 * 300.00094 * 21 19 18 46 46 H 1.07995 * 119.96772 * 180.25157 * 22 18 14 47 47 H 1.07996 * 120.03276 * 180.02562 * 23 22 18 48 48 H 1.09006 * 113.61643 * 105.47321 * 24 4 3 49 49 H 1.09004 * 113.61647 * 334.57001 * 24 4 3 50 50 H 1.07998 * 120.00149 * 179.72566 * 25 3 2 51 51 H 1.08007 * 119.99776 * 180.20375 * 26 25 3 52 52 H 1.07998 * 120.00418 * 179.79228 * 27 26 25 53 53 H 1.07992 * 120.00029 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1970 0.0000 4 6 1.4445 2.5021 -0.0006 5 1 0.3795 2.3760 0.1940 6 6 2.1043 3.5947 0.8571 7 6 1.7292 4.5858 -0.2572 8 1 2.5031 5.3248 -0.4649 9 7 0.4024 5.1836 -0.0888 10 6 0.2869 6.4743 0.2817 11 8 1.2838 7.1425 0.4765 12 6 -1.0493 7.0764 0.4508 13 6 -1.1708 8.4150 0.8344 14 6 -2.4186 8.9755 0.9854 15 6 -2.5505 10.4205 1.3924 16 8 -2.9410 10.4949 2.7650 17 14 -0.9142 11.2817 1.1648 18 6 -3.5590 8.2076 0.7676 19 7 -4.8183 8.7753 0.9266 20 6 -5.5824 8.7209 -0.3269 21 6 -5.5541 8.1264 2.0202 22 6 -3.4414 6.8739 0.3855 23 6 -2.1967 6.3094 0.2273 24 6 1.7471 3.3875 -1.2209 25 6 3.5807 1.1970 -0.0053 26 6 4.2717 0.0000 -0.0010 27 6 3.5805 -1.1972 -0.0001 28 6 2.1983 -1.1973 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 3.1792 3.4631 0.9809 33 1 1.5886 3.7812 1.7992 34 1 -0.3930 4.6504 -0.2438 35 1 -0.2863 9.0101 1.0079 36 1 -3.3054 10.9050 0.7732 37 1 -3.0448 11.3976 3.0961 38 1 0.1235 10.6304 2.0039 39 1 -0.5123 11.2389 -0.2642 40 1 -5.7034 7.6820 -0.6338 41 1 -6.5633 9.1710 -0.1744 42 1 -5.0474 9.2688 -1.1025 43 1 -4.9984 8.2422 2.9507 44 1 -6.5356 8.5893 2.1226 45 1 -5.6741 7.0659 1.7982 46 1 -4.3280 6.2818 0.2133 47 1 -2.1060 5.2750 -0.0695 48 1 0.9430 3.4068 -1.9566 49 1 2.7245 3.1993 -1.6654 50 1 4.1207 2.1323 -0.0097 51 1 5.3517 0.0000 -0.0018 52 1 4.1205 -2.1325 -0.0001 53 1 1.6584 -2.1326 0.0007 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_13422196.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:16 Heat of formation + Delta-G solvation = 34.946864 kcal Electronic energy + Delta-G solvation = -32749.766880 eV Core-core repulsion = 28554.146529 eV Total energy + Delta-G solvation = -4195.620351 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.193 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.03351 -41.34258 -40.36667 -38.89663 -37.73707 -37.29257 -34.94332 -33.77976 -32.98355 -31.84319 -31.13505 -28.52748 -27.91019 -26.94044 -26.78577 -26.78218 -25.65907 -23.66539 -23.03742 -22.82285 -21.90422 -21.33914 -20.22954 -18.95759 -18.32711 -18.05850 -17.59016 -17.49801 -16.81855 -16.56311 -16.31009 -16.23309 -15.98947 -15.90496 -15.76993 -15.24589 -15.07040 -14.99122 -14.87945 -14.61916 -14.38444 -14.15055 -14.00195 -13.87533 -13.82877 -13.56878 -13.49728 -13.36302 -13.20410 -13.07089 -12.86618 -12.76852 -12.75573 -12.63516 -12.19962 -12.09473 -12.05900 -11.79455 -11.57029 -11.30246 -11.24019 -10.36168 -10.28806 -10.19730 -9.88683 -9.70176 -9.54825 -9.45534 -5.06131 -0.52747 0.00124 0.40096 0.45449 1.26883 1.47097 1.56595 1.83341 1.93939 2.46501 2.73821 2.76966 3.32812 3.38889 3.46064 3.57124 3.61879 3.65995 3.83431 3.88234 3.95691 3.97807 4.03327 4.07488 4.13202 4.14716 4.20994 4.37509 4.37778 4.39995 4.42803 4.54362 4.54738 4.58346 4.61396 4.68489 4.69794 4.76336 4.78442 4.82991 4.88965 4.90506 4.93455 4.95249 4.98653 5.00135 5.01478 5.06419 5.14416 5.16077 5.30580 5.39230 5.44283 5.59773 5.61375 5.75111 5.85216 6.11585 6.21573 6.28528 6.95141 6.96064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.082 4.082 4 C -0.067 4.067 5 H 0.117 0.883 6 C -0.144 4.144 7 C 0.112 3.888 8 H 0.084 0.916 9 N -0.688 5.688 10 C 0.560 3.440 11 O -0.583 6.583 12 C -0.152 4.152 13 C -0.083 4.083 14 C -0.082 4.082 15 C -0.044 4.044 16 O -0.553 6.553 17 Si 0.753 3.247 18 C 0.143 3.857 19 N -0.518 5.518 20 C 0.023 3.977 21 C 0.034 3.966 22 C -0.153 4.153 23 C -0.055 4.055 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.137 4.137 27 C -0.132 4.132 28 C -0.133 4.133 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.416 0.584 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.400 0.600 38 H -0.305 1.305 39 H -0.296 1.296 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.040 0.960 46 H 0.159 0.841 47 H 0.166 0.834 48 H 0.091 0.909 49 H 0.100 0.900 50 H 0.129 0.871 51 H 0.131 0.869 52 H 0.132 0.868 53 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.539 -1.846 -1.908 7.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.082 4.082 4 C -0.085 4.085 5 H 0.134 0.866 6 C -0.182 4.182 7 C 0.007 3.993 8 H 0.103 0.897 9 N -0.340 5.340 10 C 0.348 3.652 11 O -0.464 6.464 12 C -0.155 4.155 13 C -0.102 4.102 14 C -0.083 4.083 15 C -0.156 4.156 16 O -0.362 6.362 17 Si 0.662 3.338 18 C 0.049 3.951 19 N -0.239 5.239 20 C -0.123 4.123 21 C -0.112 4.112 22 C -0.173 4.173 23 C -0.074 4.074 24 C -0.159 4.159 25 C -0.142 4.142 26 C -0.155 4.155 27 C -0.150 4.150 28 C -0.151 4.151 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.255 0.745 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.251 0.749 38 H -0.234 1.234 39 H -0.224 1.224 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.059 0.941 46 H 0.177 0.823 47 H 0.184 0.816 48 H 0.110 0.890 49 H 0.118 0.882 50 H 0.147 0.853 51 H 0.149 0.851 52 H 0.150 0.850 53 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.972 -1.598 -1.965 6.487 hybrid contribution 0.083 -1.451 -0.257 1.476 sum -5.888 -3.049 -2.222 6.993 Atomic orbital electron populations 1.20913 0.89906 1.03508 1.03115 1.20093 0.97248 0.92575 0.99470 1.19682 0.93549 0.94340 1.00592 1.21663 1.00199 0.89833 0.96775 0.86565 1.23560 1.02062 0.94915 0.97666 1.21914 0.84853 0.94655 0.97869 0.89737 1.45398 1.09552 1.10434 1.68634 1.18414 0.88612 0.82230 0.75905 1.90784 1.40196 1.62885 1.52582 1.19828 0.93357 0.94808 1.07519 1.21057 0.96881 0.94900 0.97394 1.19484 0.91398 0.96100 1.01324 1.24335 1.09537 0.94631 0.87073 1.86427 1.91780 1.34736 1.23258 0.94941 0.74572 0.87069 0.77241 1.18956 0.90944 0.91055 0.94194 1.59356 1.00761 1.56012 1.07748 1.22581 0.98797 1.01327 0.89586 1.22446 0.98805 0.97041 0.92935 1.21952 0.98981 0.95312 1.01038 1.21469 0.90317 1.00448 0.95143 1.23352 1.04282 0.92138 0.96126 1.21204 0.94066 0.98558 1.00381 1.21380 1.00729 0.92701 1.00732 1.21412 0.94738 0.98763 1.00092 1.21314 0.94581 0.98246 1.00988 0.90239 0.91144 0.90342 0.88630 0.91566 0.74464 0.87141 0.88691 0.74918 1.23357 1.22387 0.93855 0.89181 0.91469 0.92104 0.89301 0.94137 0.82328 0.81629 0.89047 0.88198 0.85271 0.85087 0.84992 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.46 9.53 71.24 0.68 1.14 16 2 C -0.09 -0.10 5.88 -19.86 -0.12 -0.22 16 3 C -0.08 -0.08 5.29 -19.86 -0.11 -0.19 16 4 C -0.07 0.18 3.58 -11.02 -0.04 0.14 16 5 H 0.12 -0.68 5.76 -2.39 -0.01 -0.70 16 6 C -0.14 -0.06 7.25 31.12 0.23 0.16 16 7 C 0.11 0.15 4.32 45.52 0.20 0.35 16 8 H 0.08 0.54 7.46 -2.39 -0.02 0.52 16 9 N -0.69 -0.60 5.21 -443.22 -2.31 -2.91 16 10 C 0.56 5.25 7.76 86.69 0.67 5.93 16 11 O -0.58 -11.15 15.94 -3.99 -0.06 -11.21 16 12 C -0.15 -1.03 5.88 -20.07 -0.12 -1.15 16 13 C -0.08 -0.90 8.19 22.50 0.18 -0.72 16 14 C -0.08 -0.58 5.30 -19.78 -0.10 -0.68 16 15 C -0.04 -0.14 2.32 71.24 0.17 0.03 16 16 O -0.55 -1.26 12.86 -148.98 -1.92 -3.17 16 17 Si 0.75 3.03 30.21 68.60 2.07 5.10 16 18 C 0.14 0.41 4.70 38.47 0.18 0.59 16 19 N -0.52 0.00 4.20 -745.08 -3.13 -3.13 16 20 C 0.02 -0.09 9.34 127.69 1.19 1.10 16 21 C 0.03 -0.07 9.38 127.69 1.20 1.13 16 22 C -0.15 0.21 8.53 22.36 0.19 0.40 16 23 C -0.05 0.07 9.53 22.50 0.21 0.29 16 24 C -0.12 0.39 7.29 31.12 0.23 0.61 16 25 C -0.12 -0.24 8.60 22.27 0.19 -0.05 16 26 C -0.14 -0.32 10.05 22.27 0.22 -0.10 16 27 C -0.13 -0.29 10.05 22.27 0.22 -0.07 16 28 C -0.13 -0.25 9.70 22.27 0.22 -0.03 16 29 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.07 -0.31 8.09 -2.39 -0.02 -0.33 16 31 H 0.08 -0.47 5.99 -2.39 -0.01 -0.49 16 32 H 0.10 0.06 6.32 -2.39 -0.02 0.04 16 33 H 0.07 0.16 8.14 -2.38 -0.02 0.14 16 34 H 0.42 -2.66 6.72 -92.71 -0.62 -3.28 16 35 H 0.11 1.73 4.47 -2.91 -0.01 1.72 16 36 H 0.10 0.00 7.78 -2.39 -0.02 -0.02 16 37 H 0.40 -3.12 8.74 -74.05 -0.65 -3.77 16 38 H -0.30 -4.12 6.74 99.48 0.67 -3.45 16 39 H -0.30 -3.13 7.11 99.48 0.71 -2.43 16 40 H 0.04 -0.26 7.10 -2.39 -0.02 -0.28 16 41 H 0.09 -0.56 8.12 -2.39 -0.02 -0.58 16 42 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.09 -0.41 8.12 -2.39 -0.02 -0.43 16 45 H 0.04 -0.17 7.32 -2.38 -0.02 -0.19 16 46 H 0.16 -1.08 6.99 -2.91 -0.02 -1.10 16 47 H 0.17 -1.58 6.39 -2.91 -0.02 -1.60 16 48 H 0.09 -0.52 8.14 -2.38 -0.02 -0.54 16 49 H 0.10 -0.27 7.71 -2.38 -0.02 -0.29 16 50 H 0.13 -0.05 6.68 -2.91 -0.02 -0.07 16 51 H 0.13 -0.08 8.06 -2.91 -0.02 -0.11 16 52 H 0.13 -0.13 8.06 -2.91 -0.02 -0.16 16 53 H 0.13 -0.17 8.06 -2.91 -0.02 -0.20 16 Total: 0.00 -24.87 419.34 0.03 -24.84 By element: Atomic # 1 Polarization: -17.86 SS G_CDS: -0.32 Total: -18.18 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 5.70 Total: 8.65 kcal Atomic # 7 Polarization: -0.59 SS G_CDS: -5.44 Total: -6.03 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -1.98 Total: -14.39 kcal Atomic # 14 Polarization: 3.03 SS G_CDS: 2.07 Total: 5.10 kcal Total: -24.87 0.03 -24.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_13422196.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.791 kcal (2) G-P(sol) polarization free energy of solvation -24.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds