Wall clock time and date at job start Tue Mar 9 2021 13:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38218 * 120.00003 * 2 1 4 4 C 1.50696 * 119.99940 * 0.02562 * 3 2 1 5 5 H 1.08999 * 112.85114 * 348.53018 * 4 3 2 6 6 C 1.53785 * 113.61603 * 119.72175 * 4 3 2 7 7 C 1.53787 * 87.07834 * 140.06204 * 6 4 3 8 8 H 1.09001 * 113.61532 * 219.93348 * 7 6 4 9 9 N 1.46505 * 113.61124 * 89.12011 * 7 6 4 10 10 C 1.34775 * 119.99844 * 154.99472 * 9 7 6 11 11 O 1.21280 * 119.99985 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99790 * 180.02562 * 10 9 7 13 13 C 1.50694 * 109.47213 * 180.02562 * 12 10 9 14 14 C 1.34850 * 125.89320 * 84.97336 * 13 12 10 15 15 C 1.40884 * 107.42192 * 180.02562 * 14 13 12 16 16 C 1.34854 * 107.41513 * 359.97438 * 15 14 13 17 17 C 1.50699 * 125.89246 * 179.74330 * 16 15 14 18 18 O 1.42897 * 109.47516 * 120.02295 * 17 16 15 19 19 Si 1.86306 * 109.46865 * 0.02562 * 17 16 15 20 20 N 1.36338 * 125.89246 * 265.00319 * 13 12 10 21 21 C 1.53777 * 87.08416 * 334.56907 * 7 6 4 22 22 C 1.38254 * 119.99991 * 179.72409 * 3 2 1 23 23 C 1.38211 * 120.00032 * 0.27519 * 22 3 2 24 24 C 1.38263 * 119.99755 * 359.97438 * 23 22 3 25 25 C 1.38209 * 120.00253 * 359.95414 * 24 23 22 26 26 H 1.09000 * 109.47360 * 89.99807 * 1 2 3 27 27 H 1.09001 * 109.47199 * 209.99674 * 1 2 3 28 28 H 1.08999 * 109.47150 * 329.99934 * 1 2 3 29 29 H 1.09000 * 113.60815 * 25.52081 * 6 4 3 30 30 H 1.08994 * 113.62030 * 254.61636 * 6 4 3 31 31 H 0.97005 * 119.99828 * 335.00164 * 9 7 6 32 32 H 1.08998 * 109.46934 * 60.00474 * 12 10 9 33 33 H 1.09005 * 109.46932 * 300.00381 * 12 10 9 34 34 H 1.08004 * 126.28908 * 0.04488 * 14 13 12 35 35 H 1.07998 * 126.29455 * 179.97438 * 15 14 13 36 36 H 1.09003 * 109.46848 * 240.02509 * 17 16 15 37 37 H 0.96702 * 113.99892 * 180.02562 * 18 17 16 38 38 H 1.48506 * 110.00042 * 298.68266 * 19 17 16 39 39 H 1.48499 * 110.00053 * 60.00274 * 19 17 16 40 40 H 0.97003 * 125.63151 * 359.97438 * 20 13 12 41 41 H 1.08997 * 113.61253 * 139.97441 * 21 7 6 42 42 H 1.08997 * 113.61308 * 270.88232 * 21 7 6 43 43 H 1.07994 * 120.00079 * 180.25452 * 22 3 2 44 44 H 1.07996 * 120.00194 * 179.97438 * 23 22 3 45 45 H 1.08004 * 119.99411 * 179.97438 * 24 23 22 46 46 H 1.07997 * 120.00227 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1970 0.0000 4 6 1.4446 2.5021 0.0006 5 1 0.3804 2.3765 -0.1988 6 6 1.7420 3.3846 1.2243 7 6 1.7260 4.5854 0.2637 8 1 2.4983 5.3248 0.4760 9 7 0.3990 5.1822 0.0924 10 6 0.2833 6.4737 -0.2749 11 8 1.2776 7.1418 -0.4640 12 6 -1.0818 7.0877 -0.4505 13 6 -0.9347 8.5302 -0.8612 14 6 -0.7617 8.9799 -2.1206 15 6 -0.6699 10.3844 -2.0581 16 6 -0.7909 10.7395 -0.7628 17 6 -0.7470 12.1464 -0.2246 18 8 -1.9777 12.4413 0.4389 19 14 -0.4981 13.3420 -1.6317 20 7 -0.9531 9.6056 -0.0234 21 6 2.1060 3.5978 -0.8520 22 6 3.5806 1.1970 0.0058 23 6 4.2717 0.0001 0.0058 24 6 3.5804 -1.1973 0.0006 25 6 2.1983 -1.1973 -0.0037 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 2.7181 3.1963 1.6715 30 1 0.9356 3.4010 1.9574 31 1 -0.3963 4.6477 0.2435 32 1 -1.6292 7.0315 0.4903 33 1 -1.6280 6.5446 -1.2218 34 1 -0.7044 8.3747 -3.0133 35 1 -0.5286 11.0536 -2.8939 36 1 0.0780 12.2397 0.4817 37 1 -2.0203 13.3330 0.8107 38 1 0.7938 13.0661 -2.3101 39 1 -1.6164 13.2247 -2.6017 40 1 -1.0637 9.5699 0.9397 41 1 1.5932 3.7862 -1.7952 42 1 3.1815 3.4678 -0.9724 43 1 4.1206 2.1323 0.0099 44 1 5.3517 0.0000 0.0099 45 1 4.1205 -2.1326 0.0002 46 1 1.6583 -2.1326 -0.0074 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_14644196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:35 Heat of formation + Delta-G solvation = 26.527282 kcal Electronic energy + Delta-G solvation = -26544.787801 eV Core-core repulsion = 22788.103729 eV Total energy + Delta-G solvation = -3756.684073 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.46645 -41.60202 -40.34338 -38.77701 -37.66261 -34.66857 -33.75962 -33.17730 -32.10677 -31.58269 -29.51100 -27.84564 -26.72817 -26.20713 -25.09532 -23.20056 -22.16606 -21.86575 -21.51033 -21.13176 -20.08884 -18.49160 -18.36819 -18.16582 -17.52983 -16.93098 -16.49034 -16.38366 -15.92339 -15.84276 -15.38026 -15.16426 -15.04147 -14.86140 -14.81337 -14.61591 -14.34012 -14.20790 -13.98405 -13.75507 -13.45470 -13.44750 -13.37266 -13.14817 -12.93169 -12.81080 -12.70597 -12.55675 -12.07910 -12.06133 -11.72319 -11.54089 -11.19044 -11.05219 -10.45640 -10.11872 -9.97676 -9.69153 -9.43258 -9.08524 -4.99352 0.41457 0.46582 0.96474 1.23305 1.55129 1.66142 1.72777 2.03791 2.17409 2.38477 2.78168 3.40692 3.45742 3.58776 3.67729 3.69989 3.90050 3.90797 3.96145 4.01448 4.05281 4.14485 4.18780 4.23723 4.24116 4.32230 4.42553 4.53902 4.57651 4.62447 4.64462 4.73180 4.80057 4.81997 4.84684 4.93384 4.99274 4.99810 5.04771 5.11434 5.14713 5.18604 5.31902 5.52211 5.62207 5.63169 5.76791 5.82145 5.95069 6.12939 6.47404 6.58219 6.83963 7.21804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.081 4.081 4 C -0.066 4.066 5 H 0.117 0.883 6 C -0.124 4.124 7 C 0.118 3.882 8 H 0.079 0.921 9 N -0.698 5.698 10 C 0.514 3.486 11 O -0.577 6.577 12 C -0.065 4.065 13 C 0.039 3.961 14 C -0.201 4.201 15 C -0.229 4.229 16 C 0.020 3.980 17 C -0.059 4.059 18 O -0.565 6.565 19 Si 0.816 3.184 20 N -0.530 5.530 21 C -0.144 4.144 22 C -0.125 4.125 23 C -0.138 4.138 24 C -0.133 4.133 25 C -0.134 4.134 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.419 0.581 32 H 0.135 0.865 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.126 0.874 36 H 0.090 0.910 37 H 0.406 0.594 38 H -0.298 1.298 39 H -0.298 1.298 40 H 0.424 0.576 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.595 -0.985 4.652 5.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.081 4.081 4 C -0.084 4.084 5 H 0.134 0.866 6 C -0.162 4.162 7 C 0.012 3.988 8 H 0.098 0.902 9 N -0.351 5.351 10 C 0.301 3.699 11 O -0.456 6.456 12 C -0.105 4.105 13 C -0.076 4.076 14 C -0.226 4.226 15 C -0.254 4.254 16 C -0.094 4.094 17 C -0.168 4.168 18 O -0.375 6.375 19 Si 0.721 3.279 20 N -0.126 5.126 21 C -0.182 4.182 22 C -0.143 4.143 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.152 4.152 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.257 0.743 32 H 0.153 0.847 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.143 0.857 36 H 0.108 0.892 37 H 0.258 0.742 38 H -0.226 1.226 39 H -0.226 1.226 40 H 0.262 0.738 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.149 0.851 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.948 -1.018 3.683 4.826 hybrid contribution 0.208 -1.010 0.234 1.057 sum -2.740 -2.028 3.917 5.193 Atomic orbital electron populations 1.20898 0.89860 1.03729 1.02927 1.20106 0.97263 0.92581 0.99470 1.19729 0.93530 0.94496 1.00378 1.21637 1.00141 0.89682 0.96941 0.86554 1.23343 1.03950 0.92698 0.96175 1.21771 0.85613 0.94272 0.97138 0.90230 1.45522 1.08956 1.11020 1.69557 1.20982 0.91656 0.81817 0.75409 1.90759 1.40984 1.62562 1.51267 1.20264 0.94459 0.88583 1.07192 1.19940 1.08582 0.89225 0.89809 1.20785 1.10332 0.94223 0.97223 1.20702 1.12887 0.96629 0.95159 1.20139 1.09849 0.88160 0.91286 1.24568 0.90189 0.94999 1.07044 1.86419 1.35119 1.39734 1.76277 0.94489 0.75597 0.83289 0.74531 1.41836 1.56049 1.04849 1.09819 1.23533 1.01680 0.95134 0.97892 1.21200 0.94137 0.98489 1.00441 1.21381 1.00706 0.92737 1.00784 1.21405 0.94744 0.98743 1.00187 1.21317 0.94582 0.98285 1.01020 0.90691 0.91058 0.90009 0.88767 0.89108 0.74334 0.84744 0.83701 0.84100 0.85655 0.89216 0.74172 1.22597 1.22581 0.73789 0.91436 0.89217 0.85338 0.85142 0.85051 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.48 9.32 71.24 0.66 1.15 16 2 C -0.09 -0.08 5.88 -19.86 -0.12 -0.20 16 3 C -0.08 -0.05 5.29 -19.87 -0.11 -0.15 16 4 C -0.07 0.24 3.40 -11.01 -0.04 0.20 16 5 H 0.12 -0.80 6.08 -2.39 -0.01 -0.81 16 6 C -0.12 0.55 7.29 31.12 0.23 0.77 16 7 C 0.12 -0.12 4.32 45.52 0.20 0.07 16 8 H 0.08 0.36 7.46 -2.39 -0.02 0.34 16 9 N -0.70 2.68 5.26 -440.02 -2.32 0.36 16 10 C 0.51 1.18 7.82 87.66 0.69 1.87 16 11 O -0.58 -7.86 15.63 -3.03 -0.05 -7.90 16 12 C -0.06 0.21 6.24 29.10 0.18 0.39 16 13 C 0.04 0.23 5.66 41.08 0.23 0.46 16 14 C -0.20 -2.09 10.76 22.14 0.24 -1.85 16 15 C -0.23 -2.81 9.37 22.14 0.21 -2.60 16 16 C 0.02 0.18 6.54 41.08 0.27 0.45 16 17 C -0.06 -0.12 3.07 71.24 0.22 0.10 16 18 O -0.57 -0.13 12.86 -148.98 -1.92 -2.05 16 19 Si 0.82 0.47 30.58 68.60 2.10 2.57 16 20 N -0.53 -3.14 6.07 -171.13 -1.04 -4.18 16 21 C -0.14 0.14 7.26 31.12 0.23 0.36 16 22 C -0.12 -0.22 8.61 22.27 0.19 -0.03 16 23 C -0.14 -0.32 10.05 22.27 0.22 -0.09 16 24 C -0.13 -0.29 10.05 22.27 0.22 -0.07 16 25 C -0.13 -0.24 9.70 22.27 0.22 -0.03 16 26 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H 0.07 -0.34 8.09 -2.39 -0.02 -0.36 16 28 H 0.08 -0.56 6.34 -2.39 -0.02 -0.58 16 29 H 0.09 -0.31 7.72 -2.39 -0.02 -0.32 16 30 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H 0.42 -4.56 8.70 -92.70 -0.81 -5.37 16 32 H 0.13 -1.31 8.14 -2.39 -0.02 -1.33 16 33 H 0.15 -1.23 8.14 -2.38 -0.02 -1.25 16 34 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 35 H 0.13 1.51 6.22 -2.91 -0.02 1.49 16 36 H 0.09 -0.16 7.96 -2.39 -0.02 -0.18 16 37 H 0.41 -4.38 8.74 -74.06 -0.65 -5.03 16 38 H -0.30 -2.29 7.11 99.48 0.71 -1.58 16 39 H -0.30 -2.50 7.11 99.48 0.71 -1.79 16 40 H 0.42 0.36 8.96 -92.71 -0.83 -0.47 16 41 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.09 0.00 6.32 -2.39 -0.02 -0.02 16 43 H 0.13 -0.07 6.67 -2.91 -0.02 -0.09 16 44 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 45 H 0.13 -0.13 8.06 -2.91 -0.02 -0.15 16 46 H 0.13 -0.17 8.06 -2.91 -0.02 -0.19 16 Total: 0.00 -27.61 377.48 -0.50 -28.10 By element: Atomic # 1 Polarization: -16.51 SS G_CDS: -1.22 Total: -17.73 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 3.94 Total: 0.82 kcal Atomic # 7 Polarization: -0.46 SS G_CDS: -3.36 Total: -3.82 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -1.96 Total: -9.95 kcal Atomic # 14 Polarization: 0.47 SS G_CDS: 2.10 Total: 2.57 kcal Total: -27.61 -0.50 -28.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_14644196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.632 kcal (2) G-P(sol) polarization free energy of solvation -27.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds