Wall clock time and date at job start Tue Mar 9 2021 13:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38217 * 119.99476 * 2 1 4 4 C 1.50699 * 120.00373 * 0.02562 * 3 2 1 5 5 H 1.09006 * 112.84776 * 348.80334 * 4 3 2 6 6 C 1.53778 * 113.61622 * 119.99551 * 4 3 2 7 7 C 1.53785 * 87.08000 * 139.98296 * 6 4 3 8 8 H 1.08996 * 113.61070 * 219.93637 * 7 6 4 9 9 N 1.46501 * 113.61194 * 89.11865 * 7 6 4 10 10 C 1.34774 * 119.99563 * 155.00031 * 9 7 6 11 11 O 1.21278 * 120.00283 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99611 * 179.97438 * 10 9 7 13 13 O 1.42904 * 109.47033 * 179.97438 * 12 10 9 14 14 C 1.35895 * 117.00129 * 179.97438 * 13 12 10 15 15 C 1.38709 * 120.05826 * 179.97438 * 14 13 12 16 16 C 1.50705 * 120.02722 * 0.04702 * 15 14 13 17 17 O 1.42896 * 109.46877 * 284.97736 * 16 15 14 18 18 Si 1.86298 * 109.47019 * 164.97816 * 16 15 14 19 19 C 1.38164 * 119.94688 * 180.02562 * 15 14 13 20 20 C 1.38245 * 120.05645 * 359.97438 * 19 15 14 21 21 C 1.38290 * 120.10982 * 0.02562 * 20 19 15 22 22 C 1.38126 * 120.05768 * 0.02562 * 21 20 19 23 23 C 1.53780 * 87.08164 * 334.56831 * 7 6 4 24 24 C 1.38259 * 119.99675 * 180.27396 * 3 2 1 25 25 C 1.38210 * 120.00247 * 359.47983 * 24 3 2 26 26 C 1.38262 * 119.99854 * 0.54473 * 25 24 3 27 27 C 1.38214 * 119.99733 * 359.70401 * 26 25 24 28 28 H 1.08995 * 109.47541 * 89.99850 * 1 2 3 29 29 H 1.09006 * 109.46798 * 209.99881 * 1 2 3 30 30 H 1.09001 * 109.47109 * 329.99104 * 1 2 3 31 31 H 1.09002 * 113.61681 * 25.43486 * 6 4 3 32 32 H 1.09004 * 113.69272 * 254.54223 * 6 4 3 33 33 H 0.97003 * 120.00134 * 334.99688 * 9 7 6 34 34 H 1.09001 * 109.47213 * 59.99895 * 12 10 9 35 35 H 1.09002 * 109.47209 * 299.99541 * 12 10 9 36 36 H 1.09001 * 109.46566 * 44.97895 * 16 15 14 37 37 H 0.96694 * 114.00335 * 299.99667 * 17 16 15 38 38 H 1.48495 * 110.00504 * 58.68249 * 18 16 15 39 39 H 1.48502 * 109.99951 * 180.02562 * 18 16 15 40 40 H 1.07997 * 119.97398 * 179.97438 * 19 15 14 41 41 H 1.07995 * 119.94685 * 179.74958 * 20 19 15 42 42 H 1.08005 * 119.97140 * 179.97438 * 21 20 19 43 43 H 1.07998 * 120.03163 * 179.97438 * 22 21 20 44 44 H 1.08995 * 113.61697 * 139.98106 * 23 7 6 45 45 H 1.08993 * 113.61409 * 270.88630 * 23 7 6 46 46 H 1.08002 * 119.99720 * 179.72576 * 24 3 2 47 47 H 1.08000 * 120.00445 * 180.27451 * 25 24 3 48 48 H 1.08002 * 120.00055 * 179.72840 * 26 25 24 49 49 H 1.08004 * 120.00156 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1971 0.0000 4 6 1.4444 2.5021 0.0006 5 1 0.3793 2.3760 -0.1941 6 6 1.7469 3.3876 1.2209 7 6 1.7289 4.5859 0.2572 8 1 2.5028 5.3248 0.4650 9 7 0.4020 5.1836 0.0888 10 6 0.2866 6.4743 -0.2817 11 8 1.2810 7.1410 -0.4751 12 6 -1.0784 7.0890 -0.4555 13 8 -0.9387 8.4560 -0.8478 14 6 -2.0834 9.1604 -1.0483 15 6 -2.0216 10.4925 -1.4299 16 6 -0.6845 11.1603 -1.6236 17 8 -0.0990 11.4325 -0.3489 18 14 -0.9171 12.7574 -2.5540 19 6 -3.1869 11.2067 -1.6326 20 6 -4.4138 10.5945 -1.4560 21 6 -4.4781 9.2665 -1.0756 22 6 -3.3160 8.5485 -0.8707 23 6 2.1042 3.5948 -0.8571 24 6 3.5805 1.1971 -0.0057 25 6 4.2717 0.0003 -0.0006 26 6 3.5805 -1.1972 -0.0011 27 6 2.1984 -1.1972 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 2.7242 3.1994 1.6655 32 1 0.9436 3.4075 1.9575 33 1 -0.3933 4.6504 0.2438 34 1 -1.6236 7.0356 0.4868 35 1 -1.6269 6.5444 -1.2241 36 1 -0.0282 10.5010 -2.1917 37 1 -0.6300 12.0146 0.2117 38 1 -1.8355 13.6525 -1.8053 39 1 0.3943 13.4254 -2.7521 40 1 -3.1393 12.2440 -1.9293 41 1 -5.3235 11.1555 -1.6110 42 1 -5.4378 8.7906 -0.9379 43 1 -3.3668 7.5115 -0.5732 44 1 1.5885 3.7812 -1.7991 45 1 3.1791 3.4632 -0.9807 46 1 4.1205 2.1325 -0.0102 47 1 5.3517 0.0003 -0.0006 48 1 4.1206 -2.1325 -0.0015 49 1 1.6584 -2.1326 -0.0014 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_2989392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:49 Heat of formation + Delta-G solvation = -15.961083 kcal Electronic energy + Delta-G solvation = -30178.416566 eV Core-core repulsion = 26038.407638 eV Total energy + Delta-G solvation = -4140.008928 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.83596 -41.35741 -40.38833 -39.00030 -38.32675 -37.60179 -34.75773 -33.72790 -32.75712 -31.81808 -31.15064 -29.37280 -27.81008 -26.73733 -26.69202 -26.03223 -23.82531 -22.99022 -22.61728 -21.88718 -21.78767 -20.14627 -19.50980 -18.41408 -18.16671 -17.61129 -17.45921 -17.06156 -16.90376 -16.65265 -16.34334 -16.03001 -15.93387 -15.59340 -15.49026 -15.09793 -15.03087 -14.93829 -14.80405 -14.43726 -14.19176 -13.97575 -13.73467 -13.69085 -13.44882 -13.39990 -13.13916 -13.04894 -12.82978 -12.74515 -12.52196 -12.12321 -12.07065 -11.87990 -11.73913 -11.68485 -11.53519 -11.19930 -11.04324 -10.53618 -10.20539 -9.96493 -9.68320 -9.42463 -9.20557 -4.95879 0.24767 0.42266 0.43247 0.47644 1.28538 1.39528 1.45494 1.53712 1.93073 2.57563 2.71294 2.78947 3.43894 3.45315 3.49006 3.65790 3.70600 3.72875 3.90161 3.91088 3.97681 4.01314 4.06005 4.07104 4.14102 4.19345 4.24096 4.32927 4.38363 4.43357 4.54714 4.57647 4.60684 4.68444 4.73364 4.79922 4.81277 4.84659 4.93231 4.99194 4.99245 4.99485 5.11755 5.19096 5.29690 5.32983 5.38910 5.47122 5.54517 5.62796 5.63557 5.77071 5.77518 6.13908 6.27722 6.45029 6.52788 7.09753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.081 4.081 4 C -0.065 4.065 5 H 0.119 0.881 6 C -0.123 4.123 7 C 0.117 3.883 8 H 0.080 0.920 9 N -0.691 5.691 10 C 0.514 3.486 11 O -0.570 6.570 12 C 0.038 3.962 13 O -0.313 6.313 14 C 0.129 3.871 15 C -0.164 4.164 16 C -0.083 4.083 17 O -0.549 6.549 18 Si 0.782 3.218 19 C -0.089 4.089 20 C -0.154 4.154 21 C -0.074 4.074 22 C -0.211 4.211 23 C -0.143 4.143 24 C -0.125 4.125 25 C -0.138 4.138 26 C -0.133 4.133 27 C -0.134 4.134 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.421 0.579 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.381 0.619 38 H -0.264 1.264 39 H -0.308 1.308 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.129 0.871 47 H 0.130 0.870 48 H 0.131 0.869 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.929 -4.790 -0.181 10.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.081 4.081 4 C -0.083 4.083 5 H 0.137 0.863 6 C -0.161 4.161 7 C 0.011 3.989 8 H 0.098 0.902 9 N -0.345 5.345 10 C 0.301 3.699 11 O -0.448 6.448 12 C -0.040 4.040 13 O -0.226 6.226 14 C 0.084 3.916 15 C -0.165 4.165 16 C -0.190 4.190 17 O -0.357 6.357 18 Si 0.686 3.314 19 C -0.106 4.106 20 C -0.172 4.172 21 C -0.092 4.092 22 C -0.230 4.230 23 C -0.181 4.181 24 C -0.143 4.143 25 C -0.156 4.156 26 C -0.151 4.151 27 C -0.152 4.152 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.259 0.741 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.114 0.886 37 H 0.230 0.770 38 H -0.190 1.190 39 H -0.237 1.237 40 H 0.163 0.837 41 H 0.168 0.832 42 H 0.172 0.828 43 H 0.173 0.827 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.147 0.853 47 H 0.148 0.852 48 H 0.149 0.851 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.472 -3.795 -0.546 8.398 hybrid contribution 0.323 -0.480 1.301 1.424 sum -7.149 -4.275 0.755 8.364 Atomic orbital electron populations 1.20901 0.89799 1.03747 1.02970 1.20105 0.97297 0.92538 0.99411 1.19718 0.93497 0.94477 1.00440 1.21648 1.00244 0.89668 0.96770 0.86343 1.23353 1.04129 0.92417 0.96224 1.21825 0.85075 0.94399 0.97604 0.90173 1.45312 1.09463 1.10370 1.69349 1.20577 0.90886 0.82305 0.76153 1.90780 1.40780 1.62478 1.50739 1.22699 0.94855 0.81838 1.04634 1.86189 1.29672 1.23484 1.83269 1.19070 0.85285 0.91320 0.95970 1.19703 0.96274 0.92697 1.07871 1.25210 0.93621 1.10200 0.90011 1.86649 1.50199 1.70780 1.28044 0.94050 0.78030 0.72792 0.86533 1.21185 0.91418 1.00227 0.97774 1.21402 0.98037 0.95773 1.02018 1.21404 0.98702 0.94135 0.94976 1.21598 0.91180 1.02392 1.07798 1.23542 1.01893 0.94876 0.97826 1.21209 0.94169 0.98489 1.00410 1.21378 1.00694 0.92758 1.00807 1.21406 0.94774 0.98720 1.00177 1.21319 0.94554 0.98309 1.01023 0.90608 0.91078 0.89961 0.88622 0.88971 0.74066 0.86101 0.85607 0.88622 0.77022 1.19035 1.23702 0.83702 0.83235 0.82827 0.82695 0.91206 0.89010 0.85330 0.85199 0.85090 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.57 9.33 71.24 0.66 1.23 16 2 C -0.09 -0.03 5.88 -19.87 -0.12 -0.15 16 3 C -0.08 -0.01 5.29 -19.86 -0.11 -0.12 16 4 C -0.07 0.27 3.41 -11.01 -0.04 0.24 16 5 H 0.12 -0.92 6.07 -2.38 -0.01 -0.94 16 6 C -0.12 0.56 7.29 31.12 0.23 0.78 16 7 C 0.12 -0.08 4.32 45.52 0.20 0.11 16 8 H 0.08 0.42 7.46 -2.39 -0.02 0.40 16 9 N -0.69 2.28 5.26 -440.04 -2.32 -0.03 16 10 C 0.51 2.22 7.91 87.66 0.69 2.91 16 11 O -0.57 -9.61 16.10 16.01 0.26 -9.35 16 12 C 0.04 -0.06 5.22 71.24 0.37 0.31 16 13 O -0.31 -2.51 9.00 -73.34 -0.66 -3.17 16 14 C 0.13 0.58 6.66 22.51 0.15 0.73 16 15 C -0.16 -0.73 5.27 -19.77 -0.10 -0.83 16 16 C -0.08 -0.58 2.38 71.24 0.17 -0.41 16 17 O -0.55 -6.01 12.88 -148.98 -1.92 -7.93 16 18 Si 0.78 1.38 30.25 68.60 2.08 3.45 16 19 C -0.09 0.01 8.66 22.25 0.19 0.21 16 20 C -0.15 0.45 10.04 22.28 0.22 0.67 16 21 C -0.07 0.29 10.04 22.26 0.22 0.51 16 22 C -0.21 0.43 9.04 22.37 0.20 0.63 16 23 C -0.14 0.19 7.25 31.12 0.23 0.41 16 24 C -0.12 -0.19 8.62 22.27 0.19 0.01 16 25 C -0.14 -0.29 10.05 22.27 0.22 -0.07 16 26 C -0.13 -0.26 10.05 22.27 0.22 -0.04 16 27 C -0.13 -0.19 9.70 22.27 0.22 0.03 16 28 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.07 -0.38 8.09 -2.38 -0.02 -0.40 16 30 H 0.08 -0.64 6.34 -2.39 -0.02 -0.65 16 31 H 0.10 -0.31 7.73 -2.39 -0.02 -0.33 16 32 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 33 H 0.42 -4.75 8.70 -92.71 -0.81 -5.56 16 34 H 0.12 -0.93 7.66 -2.39 -0.02 -0.94 16 35 H 0.13 -1.08 7.66 -2.39 -0.02 -1.09 16 36 H 0.10 0.99 7.83 -2.39 -0.02 0.97 16 37 H 0.38 1.30 8.70 -74.06 -0.64 0.65 16 38 H -0.26 -0.60 6.68 99.48 0.66 0.06 16 39 H -0.31 -3.12 7.11 99.48 0.71 -2.41 16 40 H 0.15 -0.47 4.86 -2.91 -0.01 -0.48 16 41 H 0.15 -1.12 8.06 -2.91 -0.02 -1.14 16 42 H 0.15 -1.42 8.06 -2.91 -0.02 -1.44 16 43 H 0.16 -1.30 6.30 -2.91 -0.02 -1.32 16 44 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.09 -0.04 6.30 -2.39 -0.02 -0.05 16 46 H 0.13 -0.09 6.64 -2.91 -0.02 -0.11 16 47 H 0.13 -0.10 8.06 -2.91 -0.02 -0.12 16 48 H 0.13 -0.15 8.06 -2.91 -0.02 -0.17 16 49 H 0.13 -0.22 8.06 -2.91 -0.02 -0.25 16 Total: 0.00 -27.35 398.75 1.01 -26.34 By element: Atomic # 1 Polarization: -16.03 SS G_CDS: -0.46 Total: -16.49 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 4.03 Total: 7.17 kcal Atomic # 7 Polarization: 2.28 SS G_CDS: -2.32 Total: -0.03 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -2.32 Total: -20.45 kcal Atomic # 14 Polarization: 1.38 SS G_CDS: 2.08 Total: 3.45 kcal Total: -27.35 1.01 -26.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_2989392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.379 kcal (2) G-P(sol) polarization free energy of solvation -27.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds