Wall clock time and date at job start Tue Mar 9 2021 13:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38217 * 120.00200 * 2 1 4 4 C 1.50708 * 119.99434 * 359.97438 * 3 2 1 5 5 H 1.09000 * 112.85020 * 348.79894 * 4 3 2 6 6 C 1.53783 * 113.61476 * 119.99994 * 4 3 2 7 7 C 1.53779 * 87.07923 * 140.05865 * 6 4 3 8 8 H 1.08996 * 113.61637 * 219.93069 * 7 6 4 9 9 N 1.46508 * 113.61073 * 89.11942 * 7 6 4 10 10 C 1.34777 * 119.99997 * 154.99827 * 9 7 6 11 11 O 1.21284 * 119.99863 * 359.97438 * 10 9 7 12 12 C 1.50692 * 119.99847 * 179.97438 * 10 9 7 13 13 O 1.42905 * 109.47141 * 180.02562 * 12 10 9 14 14 C 1.35901 * 117.00063 * 180.02562 * 13 12 10 15 15 C 1.38713 * 120.05607 * 179.97438 * 14 13 12 16 16 C 1.38165 * 119.94238 * 179.97438 * 15 14 13 17 17 C 1.50699 * 119.96726 * 180.02562 * 16 15 14 18 18 O 1.42900 * 109.47071 * 299.99892 * 17 16 15 19 19 Si 1.86301 * 109.46997 * 180.02562 * 17 16 15 20 20 C 1.38244 * 120.05717 * 0.02562 * 16 15 14 21 21 C 1.38286 * 120.11199 * 359.97438 * 20 16 15 22 22 C 1.38119 * 120.05462 * 0.02562 * 21 20 16 23 23 C 1.53777 * 87.08253 * 334.56782 * 7 6 4 24 24 C 1.38259 * 120.00394 * 180.24870 * 3 2 1 25 25 C 1.38216 * 119.99549 * 359.53985 * 24 3 2 26 26 C 1.38248 * 120.00196 * 0.42083 * 25 24 3 27 27 C 1.38220 * 119.99846 * 359.80470 * 26 25 24 28 28 H 1.09005 * 109.47275 * 90.00227 * 1 2 3 29 29 H 1.09005 * 109.47190 * 209.99823 * 1 2 3 30 30 H 1.09003 * 109.47509 * 330.00133 * 1 2 3 31 31 H 1.09001 * 113.61296 * 25.50996 * 6 4 3 32 32 H 1.08999 * 113.61442 * 254.61607 * 6 4 3 33 33 H 0.97002 * 119.99482 * 334.99101 * 9 7 6 34 34 H 1.09007 * 109.47135 * 60.00262 * 12 10 9 35 35 H 1.08998 * 109.47587 * 300.00060 * 12 10 9 36 36 H 1.07994 * 120.02419 * 0.25672 * 15 14 13 37 37 H 1.08993 * 109.47201 * 59.99794 * 17 16 15 38 38 H 0.96705 * 114.00328 * 299.99762 * 18 17 16 39 39 H 1.48492 * 110.00316 * 58.67708 * 19 17 16 40 40 H 1.48502 * 110.00282 * 180.02562 * 19 17 16 41 41 H 1.07998 * 119.94034 * 179.97438 * 20 16 15 42 42 H 1.07999 * 119.97218 * 180.02562 * 21 20 16 43 43 H 1.08005 * 120.02406 * 179.97438 * 22 21 20 44 44 H 1.09004 * 113.61488 * 139.98285 * 23 7 6 45 45 H 1.09002 * 113.61568 * 270.88005 * 23 7 6 46 46 H 1.07993 * 119.99931 * 179.72399 * 24 3 2 47 47 H 1.07999 * 119.99612 * 180.20326 * 25 24 3 48 48 H 1.07997 * 120.00107 * 179.79031 * 26 25 24 49 49 H 1.08002 * 119.99620 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1970 0.0000 4 6 1.4444 2.5021 -0.0006 5 1 0.3795 2.3759 -0.1961 6 6 1.7460 3.3881 1.2196 7 6 1.7267 4.5862 0.2557 8 1 2.4997 5.3261 0.4632 9 7 0.3991 5.1824 0.0872 10 6 0.2821 6.4729 -0.2835 11 8 1.2758 7.1407 -0.4771 12 6 -1.0835 7.0860 -0.4573 13 8 -0.9454 8.4528 -0.8510 14 6 -2.0910 9.1562 -1.0507 15 6 -2.0307 10.4880 -1.4335 16 6 -3.1968 11.2007 -1.6364 17 6 -3.1320 12.6476 -2.0529 18 8 -2.4364 13.3994 -1.0565 19 14 -4.8601 13.3174 -2.2416 20 6 -4.4230 10.5877 -1.4576 21 6 -4.4857 9.2600 -1.0760 22 6 -3.3229 8.5432 -0.8719 23 6 2.1029 3.5953 -0.8585 24 6 3.5806 1.1970 -0.0052 25 6 4.2717 0.0000 -0.0008 26 6 3.5804 -1.1973 0.0000 27 6 2.1982 -1.1972 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 2.7235 3.2011 1.6641 32 1 0.9420 3.4065 1.9553 33 1 -0.3956 4.6483 0.2423 34 1 -1.6286 7.0323 0.4851 35 1 -1.6315 6.5407 -1.2256 36 1 -1.0731 10.9662 -1.5773 37 1 -2.6047 12.7288 -3.0033 38 1 -2.8503 13.3722 -0.1829 39 1 -5.5996 13.1833 -0.9609 40 1 -4.8101 14.7435 -2.6527 41 1 -5.3333 11.1467 -1.6163 42 1 -5.4448 8.7832 -0.9374 43 1 -3.3725 7.5064 -0.5734 44 1 1.5870 3.7810 -1.8006 45 1 3.1780 3.4649 -0.9822 46 1 4.1205 2.1323 -0.0097 47 1 5.3517 0.0001 -0.0015 48 1 4.1204 -2.1325 0.0001 49 1 1.6583 -2.1326 0.0007 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:17:25 Heat of formation + Delta-G solvation = -18.679949 kcal Electronic energy + Delta-G solvation = -29555.520800 eV Core-core repulsion = 25415.393973 eV Total energy + Delta-G solvation = -4140.126827 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.82082 -41.30673 -40.39837 -39.21155 -38.58693 -37.33985 -34.75995 -33.72147 -32.48479 -31.95366 -31.41485 -29.28433 -27.80375 -26.85503 -26.72661 -25.96531 -23.67032 -23.37055 -22.59992 -21.87647 -21.63706 -20.12671 -19.35476 -18.63347 -17.79467 -17.67033 -17.43554 -17.24282 -16.98614 -16.74891 -16.37953 -16.24088 -15.94232 -15.61678 -15.52334 -15.10226 -14.95914 -14.80099 -14.74037 -14.42463 -14.14885 -13.98727 -13.96035 -13.69197 -13.44373 -13.39781 -13.13094 -12.99732 -12.82303 -12.73247 -12.59955 -12.11924 -12.06408 -12.03034 -11.73116 -11.61751 -11.52488 -11.19188 -11.05388 -10.68911 -10.20573 -9.92490 -9.67669 -9.41776 -9.28518 -4.90856 0.20935 0.39577 0.42961 0.48250 1.27393 1.38689 1.46018 1.62212 1.97009 2.56091 2.67183 2.79608 3.39429 3.44817 3.48823 3.65814 3.66835 3.71767 3.84809 3.92011 3.99979 4.02179 4.06755 4.08395 4.13508 4.20143 4.24863 4.25483 4.37492 4.44078 4.54826 4.58387 4.61246 4.64859 4.74460 4.80741 4.82061 4.85538 4.94007 4.98873 5.00179 5.00325 5.12427 5.19777 5.24983 5.33771 5.37524 5.45235 5.47558 5.63393 5.64208 5.70004 5.77952 6.14572 6.26567 6.44353 6.45858 7.09103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C -0.081 4.081 4 C -0.066 4.066 5 H 0.119 0.881 6 C -0.123 4.123 7 C 0.117 3.883 8 H 0.081 0.919 9 N -0.690 5.690 10 C 0.514 3.486 11 O -0.573 6.573 12 C 0.039 3.961 13 O -0.324 6.324 14 C 0.113 3.887 15 C -0.150 4.150 16 C -0.082 4.082 17 C -0.095 4.095 18 O -0.552 6.552 19 Si 0.786 3.214 20 C -0.157 4.157 21 C -0.070 4.070 22 C -0.201 4.201 23 C -0.143 4.143 24 C -0.125 4.125 25 C -0.139 4.139 26 C -0.133 4.133 27 C -0.135 4.135 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.422 0.578 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.386 0.614 39 H -0.276 1.276 40 H -0.305 1.305 41 H 0.149 0.851 42 H 0.164 0.836 43 H 0.162 0.838 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.129 0.871 47 H 0.130 0.870 48 H 0.131 0.869 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.353 -7.317 0.907 11.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.081 4.081 4 C -0.084 4.084 5 H 0.137 0.863 6 C -0.161 4.161 7 C 0.011 3.989 8 H 0.100 0.900 9 N -0.344 5.344 10 C 0.301 3.699 11 O -0.451 6.451 12 C -0.039 4.039 13 O -0.238 6.238 14 C 0.068 3.932 15 C -0.169 4.169 16 C -0.083 4.083 17 C -0.203 4.203 18 O -0.360 6.360 19 Si 0.690 3.310 20 C -0.174 4.174 21 C -0.088 4.088 22 C -0.220 4.220 23 C -0.182 4.182 24 C -0.143 4.143 25 C -0.156 4.156 26 C -0.151 4.151 27 C -0.153 4.153 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.260 0.740 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.235 0.765 39 H -0.202 1.202 40 H -0.234 1.234 41 H 0.167 0.833 42 H 0.181 0.819 43 H 0.179 0.821 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.147 0.853 47 H 0.148 0.852 48 H 0.149 0.851 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.621 -6.088 0.533 9.769 hybrid contribution 1.008 -0.140 1.072 1.478 sum -6.613 -6.228 1.604 9.225 Atomic orbital electron populations 1.20902 0.89775 1.03766 1.02972 1.20105 0.97312 0.92532 0.99399 1.19716 0.93482 0.94479 1.00403 1.21662 1.00274 0.89662 0.96835 0.86305 1.23353 1.04163 0.92373 0.96214 1.21831 0.85067 0.94449 0.97561 0.90046 1.45317 1.09506 1.10380 1.69219 1.20596 0.90898 0.82329 0.76077 1.90772 1.40927 1.62505 1.50930 1.22727 0.94852 0.81408 1.04916 1.86126 1.29903 1.24074 1.83654 1.19199 0.85497 0.91603 0.96893 1.20286 0.99135 0.92132 1.05356 1.20133 0.92879 0.96106 0.99166 1.25482 1.11469 0.89112 0.94216 1.86580 1.54152 1.72279 1.22964 0.93887 0.73500 0.78821 0.84802 1.21218 0.96638 0.96542 1.03034 1.21339 0.99179 0.93319 0.94941 1.21642 0.90922 1.02501 1.06903 1.23547 1.01907 0.94909 0.97840 1.21209 0.94177 0.98473 1.00393 1.21375 1.00686 0.92770 1.00818 1.21401 0.94781 0.98723 1.00208 1.21322 0.94555 0.98331 1.01054 0.90616 0.91107 0.89892 0.88608 0.88895 0.73979 0.85566 0.85430 0.87143 0.86319 0.76465 1.20247 1.23401 0.83344 0.81884 0.82066 0.91224 0.89018 0.85294 0.85224 0.85141 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.63 9.33 71.23 0.66 1.30 16 2 C -0.09 0.02 5.88 -19.87 -0.12 -0.10 16 3 C -0.08 0.04 5.29 -19.86 -0.11 -0.07 16 4 C -0.07 0.33 3.40 -11.01 -0.04 0.29 16 5 H 0.12 -1.02 6.08 -2.39 -0.01 -1.04 16 6 C -0.12 0.67 7.29 31.12 0.23 0.90 16 7 C 0.12 -0.21 4.32 45.51 0.20 -0.01 16 8 H 0.08 0.32 7.46 -2.39 -0.02 0.30 16 9 N -0.69 3.17 5.26 -440.04 -2.32 0.86 16 10 C 0.51 1.46 7.91 87.65 0.69 2.15 16 11 O -0.57 -8.77 16.10 15.99 0.26 -8.51 16 12 C 0.04 -0.13 5.22 71.23 0.37 0.25 16 13 O -0.32 -2.25 9.67 -73.40 -0.71 -2.96 16 14 C 0.11 0.47 6.69 22.51 0.15 0.62 16 15 C -0.15 -0.99 9.55 22.37 0.21 -0.78 16 16 C -0.08 -0.17 5.39 -19.88 -0.11 -0.28 16 17 C -0.10 -0.16 2.82 71.24 0.20 0.04 16 18 O -0.55 -3.14 12.77 -148.98 -1.90 -5.04 16 19 Si 0.79 -1.54 29.79 68.60 2.04 0.50 16 20 C -0.16 0.39 8.67 22.28 0.19 0.58 16 21 C -0.07 0.34 10.04 22.25 0.22 0.56 16 22 C -0.20 0.64 9.04 22.36 0.20 0.85 16 23 C -0.14 0.31 7.25 31.12 0.23 0.53 16 24 C -0.12 -0.12 8.63 22.27 0.19 0.08 16 25 C -0.14 -0.24 10.05 22.27 0.22 -0.01 16 26 C -0.13 -0.22 10.05 22.27 0.22 0.01 16 27 C -0.13 -0.14 9.70 22.27 0.22 0.07 16 28 H 0.08 -0.46 8.14 -2.38 -0.02 -0.48 16 29 H 0.07 -0.41 8.09 -2.38 -0.02 -0.43 16 30 H 0.08 -0.70 6.34 -2.39 -0.02 -0.71 16 31 H 0.10 -0.40 7.73 -2.39 -0.02 -0.42 16 32 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 33 H 0.42 -5.33 8.70 -92.71 -0.81 -6.14 16 34 H 0.13 -1.26 7.66 -2.38 -0.02 -1.28 16 35 H 0.13 -1.29 7.66 -2.39 -0.02 -1.31 16 36 H 0.11 1.14 8.06 -2.91 -0.02 1.12 16 37 H 0.12 0.14 7.96 -2.39 -0.02 0.12 16 38 H 0.39 -0.18 8.70 -74.05 -0.64 -0.82 16 39 H -0.28 -0.20 7.11 99.48 0.71 0.50 16 40 H -0.31 -1.87 7.11 99.48 0.71 -1.16 16 41 H 0.15 -1.03 4.87 -2.91 -0.01 -1.05 16 42 H 0.16 -1.82 8.06 -2.91 -0.02 -1.85 16 43 H 0.16 -1.68 6.30 -2.91 -0.02 -1.70 16 44 H 0.07 -0.06 8.14 -2.38 -0.02 -0.08 16 45 H 0.09 -0.11 6.31 -2.39 -0.02 -0.12 16 46 H 0.13 -0.18 6.65 -2.91 -0.02 -0.19 16 47 H 0.13 -0.14 8.06 -2.91 -0.02 -0.17 16 48 H 0.13 -0.18 8.06 -2.91 -0.02 -0.21 16 49 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 Total: 0.00 -27.38 399.54 1.00 -26.37 By element: Atomic # 1 Polarization: -17.75 SS G_CDS: -0.42 Total: -18.17 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 4.05 Total: 6.96 kcal Atomic # 7 Polarization: 3.17 SS G_CDS: -2.32 Total: 0.86 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -2.35 Total: -16.51 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: 2.04 Total: 0.50 kcal Total: -27.38 1.00 -26.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.691 kcal (2) G-P(sol) polarization free energy of solvation -27.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds