Wall clock time and date at job start Tue Mar 9 2021 13:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35987 * 116.99835 * 2 1 4 4 C 1.38677 * 119.99862 * 180.02562 * 3 2 1 5 5 C 1.38155 * 119.99677 * 179.74455 * 4 3 2 6 6 C 1.50701 * 119.99671 * 180.24861 * 5 4 3 7 7 O 1.42901 * 109.47087 * 105.26123 * 6 5 4 8 8 Si 1.86303 * 109.47534 * 345.26001 * 6 5 4 9 9 C 1.38672 * 120.00260 * 0.50878 * 5 4 3 10 10 O 1.35978 * 120.00068 * 179.73961 * 9 5 4 11 11 C 1.42900 * 116.99831 * 179.72765 * 10 9 5 12 12 C 1.50703 * 109.47361 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99488 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00290 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99828 * 180.27728 * 14 12 11 16 16 H 1.09002 * 112.85022 * 335.91707 * 15 14 12 17 17 C 1.53782 * 113.61718 * 107.22525 * 15 14 12 18 18 C 1.53774 * 87.08161 * 89.11276 * 17 15 14 19 19 H 1.09004 * 113.61904 * 270.88211 * 18 17 15 20 20 C 1.50708 * 113.61658 * 139.98259 * 18 17 15 21 21 C 1.38207 * 120.00115 * 142.50232 * 20 18 17 22 22 C 1.50696 * 119.99964 * 0.02562 * 21 20 18 23 23 C 1.38255 * 119.99836 * 179.97438 * 21 20 18 24 24 C 1.38219 * 120.00022 * 359.97438 * 23 21 20 25 25 C 1.38254 * 120.00121 * 0.02977 * 24 23 21 26 26 C 1.38222 * 119.99826 * 359.69240 * 25 24 23 27 27 C 1.53781 * 113.61158 * 204.72374 * 15 14 12 28 28 C 1.38718 * 119.99675 * 359.47228 * 9 5 4 29 29 C 1.38110 * 120.00292 * 0.26886 * 28 9 5 30 30 H 1.09005 * 109.47466 * 59.99853 * 1 2 3 31 31 H 1.08999 * 109.47064 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47275 * 300.00355 * 1 2 3 33 33 H 1.07997 * 120.00310 * 0.02562 * 4 3 2 34 34 H 1.09002 * 109.46925 * 225.25792 * 6 5 4 35 35 H 0.96699 * 113.99938 * 300.00132 * 7 6 5 36 36 H 1.48494 * 109.99833 * 58.67849 * 8 6 5 37 37 H 1.48495 * 109.99866 * 179.97438 * 8 6 5 38 38 H 1.08998 * 109.47421 * 60.00077 * 11 10 9 39 39 H 1.09002 * 109.47461 * 300.00340 * 11 10 9 40 40 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 41 41 H 1.08999 * 113.61704 * 203.66488 * 17 15 14 42 42 H 1.09006 * 113.61098 * 334.56706 * 17 15 14 43 43 H 1.09002 * 109.47303 * 90.00268 * 22 21 20 44 44 H 1.09001 * 109.47065 * 209.99763 * 22 21 20 45 45 H 1.08998 * 109.47426 * 329.99899 * 22 21 20 46 46 H 1.07997 * 120.00025 * 180.02562 * 23 21 20 47 47 H 1.08003 * 119.99751 * 179.97438 * 24 23 21 48 48 H 1.07995 * 120.00068 * 179.97438 * 25 24 23 49 49 H 1.07999 * 119.99892 * 180.29871 * 26 25 24 50 50 H 1.08995 * 113.61890 * 25.43111 * 27 15 14 51 51 H 1.08997 * 113.61580 * 156.33630 * 27 15 14 52 52 H 1.08005 * 119.99855 * 180.29750 * 28 9 5 53 53 H 1.07995 * 120.00196 * 179.97438 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4312 1.2843 -0.0005 5 6 4.0583 2.5153 -0.0059 6 6 5.5632 2.5941 -0.0121 7 8 6.0151 2.9702 -1.3146 8 14 6.2742 0.9313 0.4357 9 6 3.3030 3.6783 0.0000 10 8 3.9204 4.8898 0.0001 11 6 3.0804 6.0459 0.0002 12 6 3.9345 7.2875 -0.0003 13 8 5.1436 7.1917 -0.0003 14 7 3.3549 8.5043 0.0002 15 6 4.1852 9.7112 -0.0064 16 1 5.1828 9.5409 0.3987 17 6 4.1838 10.4525 -1.3537 18 6 2.9632 11.2307 -0.8349 19 1 2.0112 10.7482 -1.0565 20 6 2.9789 12.6926 -1.2009 21 6 1.8012 13.3341 -1.5347 22 6 0.5011 12.5720 -1.5321 23 6 1.8156 14.6753 -1.8699 24 6 3.0078 15.3747 -1.8707 25 6 4.1860 14.7329 -1.5369 26 6 4.1708 13.3934 -1.1962 27 6 3.4830 10.9453 0.5840 28 6 1.9178 3.6056 0.0001 29 6 1.2907 2.3751 0.0000 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 4.0194 0.3786 -0.0014 34 1 5.8911 3.3372 0.7148 35 1 5.7588 2.3528 -2.0133 36 1 5.8088 -0.0966 -0.5295 37 1 7.7578 0.9958 0.4324 38 1 2.4512 6.0378 0.8902 39 1 2.4510 6.0379 -0.8897 40 1 2.3879 8.5808 0.0006 41 1 5.0645 11.0754 -1.5103 42 1 3.9619 9.8096 -2.2056 43 1 0.0437 12.6373 -0.5448 44 1 -0.1728 13.0007 -2.2738 45 1 0.6921 11.5269 -1.7757 46 1 0.8953 15.1768 -2.1303 47 1 3.0191 16.4223 -2.1330 48 1 5.1176 15.2792 -1.5380 49 1 5.0904 12.8932 -0.9308 50 1 2.6954 10.7003 1.2966 51 1 4.1720 11.7029 0.9572 52 1 1.3295 4.5114 -0.0002 53 1 0.2123 2.3185 0.0006 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_4974302.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:17:36 Heat of formation + Delta-G solvation = -49.320143 kcal Electronic energy + Delta-G solvation = -34421.891644 eV Core-core repulsion = 29806.216348 eV Total energy + Delta-G solvation = -4615.675297 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.87993 -41.54006 -40.58525 -39.82015 -38.81662 -38.19842 -36.95833 -34.73506 -33.72690 -32.82699 -31.80896 -30.94209 -29.36221 -27.96954 -27.78310 -26.72231 -26.63698 -26.02736 -23.89419 -23.01418 -22.43133 -21.88152 -21.81883 -20.13786 -19.65232 -18.76484 -18.51709 -17.90269 -17.61891 -17.39394 -17.22545 -16.93528 -16.62670 -16.52117 -16.08472 -16.06312 -15.91317 -15.59425 -15.47522 -15.21358 -14.96272 -14.89975 -14.71243 -14.37038 -14.29437 -14.01173 -13.96992 -13.70495 -13.47185 -13.44551 -13.42332 -13.17055 -13.00857 -12.83422 -12.71249 -12.48649 -12.43492 -12.05492 -11.87807 -11.75199 -11.72437 -11.50741 -11.41278 -11.18638 -11.01298 -10.56630 -10.18191 -10.11896 -9.67724 -9.42568 -8.78498 -4.96266 0.07264 0.37556 0.42850 0.47793 1.26558 1.42746 1.47764 1.55154 1.90826 2.35762 2.55962 2.60982 2.79671 3.41854 3.45399 3.49721 3.66009 3.68201 3.71805 3.76737 3.93158 3.96439 4.01131 4.06233 4.10065 4.11572 4.14984 4.17640 4.24306 4.26211 4.41901 4.44036 4.44595 4.49041 4.58449 4.62897 4.70299 4.74268 4.79494 4.80548 4.82802 4.86920 4.93762 4.98880 4.99652 5.00941 5.13455 5.16367 5.18980 5.23474 5.33932 5.44082 5.49423 5.62993 5.63830 5.78431 6.14240 6.20084 6.41705 6.48702 6.51959 7.12828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.087 3.913 4 C -0.126 4.126 5 C -0.118 4.118 6 C -0.076 4.076 7 O -0.544 6.544 8 Si 0.774 3.226 9 C 0.101 3.899 10 O -0.310 6.310 11 C 0.036 3.964 12 C 0.514 3.486 13 O -0.569 6.569 14 N -0.692 5.692 15 C 0.118 3.882 16 H 0.081 0.919 17 C -0.145 4.145 18 C -0.067 4.067 19 H 0.119 0.881 20 C -0.081 4.081 21 C -0.094 4.094 22 C -0.118 4.118 23 C -0.134 4.134 24 C -0.133 4.133 25 C -0.138 4.138 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.163 4.163 29 C -0.157 4.157 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.382 0.618 36 H -0.273 1.273 37 H -0.301 1.301 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.421 0.579 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.131 0.869 47 H 0.131 0.869 48 H 0.130 0.870 49 H 0.129 0.871 50 H 0.093 0.907 51 H 0.095 0.905 52 H 0.166 0.834 53 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.160 0.805 2.223 11.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.042 3.958 4 C -0.144 4.144 5 C -0.119 4.119 6 C -0.184 4.184 7 O -0.352 6.352 8 Si 0.678 3.322 9 C 0.056 3.944 10 O -0.223 6.223 11 C -0.041 4.041 12 C 0.301 3.699 13 O -0.447 6.447 14 N -0.346 5.346 15 C 0.012 3.988 16 H 0.099 0.901 17 C -0.184 4.184 18 C -0.085 4.085 19 H 0.137 0.863 20 C -0.081 4.081 21 C -0.094 4.094 22 C -0.174 4.174 23 C -0.152 4.152 24 C -0.151 4.151 25 C -0.156 4.156 26 C -0.142 4.142 27 C -0.159 4.159 28 C -0.181 4.181 29 C -0.176 4.176 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.162 0.838 34 H 0.124 0.876 35 H 0.230 0.770 36 H -0.199 1.199 37 H -0.229 1.229 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.259 0.741 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.149 0.851 47 H 0.149 0.851 48 H 0.148 0.852 49 H 0.147 0.853 50 H 0.112 0.888 51 H 0.114 0.886 52 H 0.184 0.816 53 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.291 0.425 2.310 9.583 hybrid contribution -0.447 0.781 -1.421 1.682 sum -9.737 1.205 0.889 9.852 Atomic orbital electron populations 1.23344 0.76404 1.05527 1.02407 1.86080 1.23396 1.26515 1.89047 1.18956 0.91976 0.85229 0.99599 1.20269 0.92582 0.97042 1.04491 1.19358 0.96041 0.90587 1.05933 1.25114 0.92147 1.13467 0.87714 1.86659 1.78749 1.52680 1.17076 0.94019 0.76495 0.72497 0.89165 1.18830 0.91523 0.84494 0.99538 1.86208 1.35170 1.11883 1.89046 1.22708 0.92583 0.82108 1.06742 1.20587 0.88359 0.85463 0.75514 1.90784 1.16889 1.87286 1.49751 1.45315 1.11041 1.03550 1.74660 1.21813 0.95470 0.83960 0.97560 0.90056 1.23560 0.98986 0.98562 0.97272 1.21687 0.99518 0.90838 0.96430 0.86289 1.19711 0.92715 0.95728 0.99952 1.20098 0.96022 0.94383 0.98877 1.20912 0.93128 1.00258 1.03096 1.21317 0.98657 0.94379 1.00866 1.21402 0.92906 1.00691 1.00096 1.21377 0.98844 0.95253 1.00167 1.21209 0.98239 0.94534 1.00267 1.23337 1.00727 0.95665 0.96194 1.21385 0.92084 1.00006 1.04656 1.21401 1.01531 0.90878 1.03766 0.91650 0.86887 0.91238 0.83760 0.87582 0.76951 1.19916 1.22930 0.85451 0.86075 0.74075 0.89090 0.91431 0.90228 0.91264 0.90135 0.85066 0.85114 0.85215 0.85324 0.88847 0.88611 0.81648 0.82205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 113.37 1.11 1.01 16 2 O -0.34 -0.66 10.50 -93.41 -0.98 -1.64 16 3 C 0.09 0.18 6.69 22.49 0.15 0.33 16 4 C -0.13 -0.43 8.59 22.36 0.19 -0.24 16 5 C -0.12 -0.60 5.27 -19.78 -0.10 -0.71 16 6 C -0.08 -0.53 2.37 71.24 0.17 -0.36 16 7 O -0.54 -5.72 12.88 -148.98 -1.92 -7.64 16 8 Si 0.77 2.36 30.24 68.60 2.07 4.43 16 9 C 0.10 0.40 6.66 22.49 0.15 0.55 16 10 O -0.31 -2.13 9.00 -74.27 -0.67 -2.80 16 11 C 0.04 -0.10 5.22 71.24 0.37 0.27 16 12 C 0.51 1.77 7.91 87.66 0.69 2.47 16 13 O -0.57 -9.11 16.10 16.00 0.26 -8.85 16 14 N -0.69 2.76 5.26 -440.03 -2.32 0.44 16 15 C 0.12 -0.14 4.32 45.52 0.20 0.05 16 16 H 0.08 0.37 7.47 -2.39 -0.02 0.35 16 17 C -0.15 0.19 7.25 31.12 0.23 0.42 16 18 C -0.07 0.29 3.57 -11.01 -0.04 0.25 16 19 H 0.12 -0.96 5.76 -2.39 -0.01 -0.97 16 20 C -0.08 0.00 5.29 -19.86 -0.11 -0.11 16 21 C -0.09 -0.02 5.88 -19.87 -0.12 -0.13 16 22 C -0.12 0.59 9.53 71.23 0.68 1.27 16 23 C -0.13 -0.18 9.70 22.27 0.22 0.04 16 24 C -0.13 -0.25 10.05 22.27 0.22 -0.03 16 25 C -0.14 -0.28 10.05 22.27 0.22 -0.06 16 26 C -0.12 -0.17 8.60 22.27 0.19 0.02 16 27 C -0.12 0.61 7.29 31.12 0.23 0.84 16 28 C -0.16 0.40 9.03 22.35 0.20 0.60 16 29 C -0.16 0.37 9.03 22.35 0.20 0.57 16 30 H 0.06 -0.53 7.66 -2.38 -0.02 -0.55 16 31 H 0.11 -0.96 8.14 -2.39 -0.02 -0.98 16 32 H 0.07 -0.60 7.66 -2.39 -0.02 -0.62 16 33 H 0.15 0.31 4.86 -2.91 -0.01 0.30 16 34 H 0.11 0.97 7.82 -2.39 -0.02 0.96 16 35 H 0.38 1.31 8.70 -74.06 -0.64 0.67 16 36 H -0.27 -1.40 6.69 99.48 0.67 -0.73 16 37 H -0.30 -3.13 7.11 99.48 0.71 -2.43 16 38 H 0.13 -1.28 7.66 -2.39 -0.02 -1.29 16 39 H 0.12 -1.08 7.66 -2.39 -0.02 -1.10 16 40 H 0.42 -5.06 8.70 -92.71 -0.81 -5.86 16 41 H 0.09 -0.03 6.33 -2.39 -0.02 -0.04 16 42 H 0.07 0.02 8.14 -2.38 -0.02 0.00 16 43 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 44 H 0.07 -0.37 8.09 -2.39 -0.02 -0.39 16 45 H 0.08 -0.61 5.99 -2.39 -0.01 -0.62 16 46 H 0.13 -0.23 8.06 -2.91 -0.02 -0.25 16 47 H 0.13 -0.15 8.06 -2.91 -0.02 -0.18 16 48 H 0.13 -0.10 8.06 -2.91 -0.02 -0.12 16 49 H 0.13 -0.11 6.68 -2.91 -0.02 -0.13 16 50 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 51 H 0.10 -0.37 7.71 -2.39 -0.02 -0.39 16 52 H 0.17 -1.64 6.29 -2.91 -0.02 -1.66 16 53 H 0.16 -1.29 6.29 -2.91 -0.02 -1.31 16 Total: 0.00 -28.66 427.95 1.02 -27.64 By element: Atomic # 1 Polarization: -18.15 SS G_CDS: -0.49 Total: -18.64 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 5.06 Total: 7.05 kcal Atomic # 7 Polarization: 2.76 SS G_CDS: -2.32 Total: 0.44 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -3.31 Total: -20.93 kcal Atomic # 14 Polarization: 2.36 SS G_CDS: 2.07 Total: 4.43 kcal Total: -28.66 1.02 -27.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_4974302.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.677 kcal (2) G-P(sol) polarization free energy of solvation -28.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds