Wall clock time and date at job start Tue Mar 9 2021 13:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38217 * 119.99559 * 2 1 4 4 C 1.50692 * 120.00327 * 0.02562 * 3 2 1 5 5 H 1.09004 * 112.90785 * 11.24583 * 4 3 2 6 6 C 1.53784 * 113.61665 * 142.49976 * 4 3 2 7 7 C 1.53778 * 87.08081 * 139.98095 * 6 4 3 8 8 H 1.08999 * 113.61526 * 220.02035 * 7 6 4 9 9 N 1.46498 * 113.61736 * 89.11728 * 7 6 4 10 10 C 1.34778 * 120.00186 * 107.49948 * 9 7 6 11 11 O 1.21634 * 119.99910 * 0.02562 * 10 9 7 12 12 C 1.47189 * 120.00131 * 180.02562 * 10 9 7 13 13 C 1.36010 * 123.46182 * 0.02778 * 12 10 9 14 14 S 1.70445 * 110.81904 * 179.97438 * 13 12 10 15 15 C 1.75507 * 92.44450 * 359.97438 * 14 13 12 16 16 C 1.50703 * 124.71234 * 179.97438 * 15 14 13 17 17 O 1.42898 * 109.46758 * 245.02406 * 16 15 14 18 18 Si 1.86296 * 109.46990 * 5.02570 * 16 15 14 19 19 C 1.32774 * 110.57424 * 359.73753 * 15 14 13 20 20 C 1.53778 * 87.08449 * 334.56700 * 7 6 4 21 21 C 1.38264 * 119.99617 * 180.27330 * 3 2 1 22 22 C 1.38215 * 120.00228 * 359.50060 * 21 3 2 23 23 C 1.38261 * 119.99596 * 0.50244 * 22 21 3 24 24 C 1.38211 * 119.99819 * 359.74649 * 23 22 21 25 25 H 1.09003 * 109.47721 * 89.99785 * 1 2 3 26 26 H 1.09008 * 109.47227 * 209.99708 * 1 2 3 27 27 H 1.09004 * 109.47637 * 329.99951 * 1 2 3 28 28 H 1.08993 * 113.61313 * 254.52692 * 6 4 3 29 29 H 1.09000 * 113.61578 * 25.43424 * 6 4 3 30 30 H 0.97004 * 120.00105 * 287.50659 * 9 7 6 31 31 H 1.07997 * 124.58964 * 359.97438 * 13 12 10 32 32 H 1.08994 * 109.47170 * 125.02441 * 16 15 14 33 33 H 0.96705 * 114.00024 * 59.99970 * 17 16 15 34 34 H 1.48496 * 110.00372 * 58.68219 * 18 16 15 35 35 H 1.48502 * 109.99729 * 180.02562 * 18 16 15 36 36 H 1.08002 * 123.45776 * 180.22482 * 19 15 14 37 37 H 1.08998 * 113.61879 * 270.88747 * 20 7 6 38 38 H 1.08997 * 113.69304 * 139.98833 * 20 7 6 39 39 H 1.07998 * 119.99831 * 179.72439 * 21 3 2 40 40 H 1.07994 * 120.00499 * 180.23081 * 22 21 3 41 41 H 1.07997 * 119.99732 * 179.72838 * 23 22 21 42 42 H 1.08001 * 119.99748 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1970 0.0000 4 6 1.4444 2.5021 0.0006 5 1 0.3795 2.3771 0.1968 6 6 2.1048 3.5944 0.8583 7 6 1.7288 4.5859 -0.2553 8 1 2.5035 5.3243 -0.4623 9 7 0.4021 5.1836 -0.0857 10 6 0.2868 6.4742 0.2855 11 8 1.2843 7.1427 0.4791 12 6 -1.0461 7.0745 0.4564 13 6 -2.2065 6.3929 0.2594 14 16 -3.5544 7.3957 0.5467 15 6 -2.5405 8.7720 0.9442 16 6 -3.0558 10.1332 1.3351 17 8 -2.6823 11.0878 0.3395 18 14 -4.9125 10.0772 1.4763 19 6 -1.2563 8.4459 0.8577 20 6 1.7461 3.3882 -1.2196 21 6 3.5805 1.1971 -0.0057 22 6 4.2717 0.0002 -0.0010 23 6 3.5804 -1.1972 -0.0011 24 6 2.1983 -1.1972 -0.0005 25 1 -0.3635 0.0000 -1.0277 26 1 -0.3634 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.5897 3.7804 1.8007 29 1 3.1798 3.4628 0.9811 30 1 -0.3934 4.6506 -0.2403 31 1 -2.2657 5.3566 -0.0387 32 1 -2.6270 10.4222 2.2946 33 1 -3.0297 10.8933 -0.5418 34 1 -5.3149 9.0653 2.4859 35 1 -5.4332 11.4138 1.8607 36 1 -0.4515 9.1365 1.0623 37 1 2.7231 3.2001 -1.6649 38 1 0.9421 3.4065 -1.9553 39 1 4.1205 2.1324 -0.0102 40 1 5.3516 0.0001 -0.0017 41 1 4.1205 -2.1325 -0.0018 42 1 1.6583 -2.1325 -0.0010 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_6894386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:18:46 Heat of formation + Delta-G solvation = 19.269277 kcal Electronic energy + Delta-G solvation = -24602.517108 eV Core-core repulsion = 21027.407940 eV Total energy + Delta-G solvation = -3575.109168 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.108 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.74062 -40.62430 -39.13839 -38.51936 -37.09455 -34.73705 -33.72621 -32.05925 -31.23453 -27.87833 -26.96969 -26.72685 -26.59916 -25.28654 -23.09356 -22.18259 -21.86582 -20.58107 -20.16883 -18.86410 -18.26580 -17.65758 -17.54310 -16.87371 -16.50629 -16.37285 -16.04626 -15.90921 -15.62313 -15.21842 -15.03284 -14.87836 -14.54749 -14.29251 -14.11457 -13.97571 -13.82885 -13.65891 -13.46635 -13.44313 -13.17077 -12.82682 -12.73351 -12.61189 -12.30482 -12.05259 -11.94036 -11.72917 -11.50825 -11.18448 -11.07800 -10.58256 -10.22775 -9.99684 -9.67628 -9.44205 -9.41484 -5.13825 -0.34172 0.39503 0.42966 0.48118 0.69526 0.81308 1.22498 1.60864 1.90787 2.02812 2.23174 2.79907 3.39611 3.44734 3.65477 3.68014 3.70136 3.88556 3.92869 3.98530 4.01404 4.06432 4.17208 4.24233 4.27540 4.40649 4.42182 4.58459 4.63296 4.70719 4.73881 4.80431 4.82438 4.86524 4.93526 4.98479 4.99969 5.00298 5.13936 5.16800 5.19097 5.33830 5.50130 5.63182 5.64055 5.78467 6.14399 6.43951 6.69235 7.12602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.081 4.081 4 C -0.067 4.067 5 H 0.117 0.883 6 C -0.144 4.144 7 C 0.116 3.884 8 H 0.084 0.916 9 N -0.692 5.692 10 C 0.577 3.423 11 O -0.584 6.584 12 C -0.184 4.184 13 C -0.188 4.188 14 S 0.256 5.744 15 C -0.250 4.250 16 C -0.039 4.039 17 O -0.553 6.553 18 Si 0.744 3.256 19 C -0.077 4.077 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.138 4.138 23 C -0.133 4.133 24 C -0.134 4.134 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.415 0.585 31 H 0.206 0.794 32 H 0.113 0.887 33 H 0.397 0.603 34 H -0.256 1.256 35 H -0.274 1.274 36 H 0.130 0.870 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.938 -5.207 -3.466 9.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.081 4.081 4 C -0.085 4.085 5 H 0.135 0.865 6 C -0.183 4.183 7 C 0.010 3.990 8 H 0.102 0.898 9 N -0.343 5.343 10 C 0.365 3.635 11 O -0.465 6.465 12 C -0.202 4.202 13 C -0.327 4.327 14 S 0.523 5.477 15 C -0.367 4.367 16 C -0.151 4.151 17 O -0.361 6.361 18 Si 0.645 3.355 19 C -0.107 4.107 20 C -0.160 4.160 21 C -0.142 4.142 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.152 4.152 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.253 0.747 31 H 0.223 0.777 32 H 0.130 0.870 33 H 0.247 0.753 34 H -0.181 1.181 35 H -0.200 1.200 36 H 0.147 0.853 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.193 -4.600 -2.385 9.694 hybrid contribution 2.545 -0.025 0.476 2.590 sum -5.648 -4.625 -1.909 7.545 Atomic orbital electron populations 1.20913 0.89860 1.03514 1.03130 1.20095 0.97280 0.92564 0.99469 1.19700 0.93531 0.94414 1.00460 1.21668 1.00175 0.89750 0.96889 0.86539 1.23559 1.01930 0.95039 0.97746 1.21844 0.85089 0.94512 0.97518 0.89790 1.45344 1.09236 1.10639 1.69091 1.17935 0.88140 0.81811 0.75639 1.90794 1.40158 1.62805 1.52759 1.20051 0.92917 0.95118 1.12072 1.26193 0.96652 1.06618 1.03217 1.82852 1.05754 0.97981 1.61137 1.24901 0.97284 1.02016 1.12458 1.24713 1.12219 0.83966 0.94164 1.86508 1.78766 1.48374 1.22461 0.94188 0.72304 0.80761 0.88204 1.20982 0.96573 0.94311 0.98789 1.23344 1.04176 0.92337 0.96128 1.21209 0.94108 0.98528 1.00370 1.21380 1.00707 0.92731 1.00775 1.21406 0.94757 0.98742 1.00180 1.21310 0.94567 0.98272 1.01031 0.90222 0.91213 0.90251 0.91563 0.88824 0.74692 0.77711 0.87022 0.75279 1.18108 1.19979 0.85262 0.88401 0.89062 0.85247 0.85143 0.85077 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.55 9.53 71.23 0.68 1.22 16 2 C -0.09 -0.04 5.88 -19.87 -0.12 -0.16 16 3 C -0.08 -0.03 5.29 -19.87 -0.11 -0.13 16 4 C -0.07 0.24 3.57 -11.01 -0.04 0.20 16 5 H 0.12 -0.81 5.76 -2.39 -0.01 -0.82 16 6 C -0.14 0.09 7.25 31.12 0.23 0.32 16 7 C 0.12 -0.01 4.32 45.52 0.20 0.19 16 8 H 0.08 0.43 7.46 -2.39 -0.02 0.41 16 9 N -0.69 0.79 5.23 -443.53 -2.32 -1.53 16 10 C 0.58 3.78 7.79 86.59 0.67 4.45 16 11 O -0.58 -9.62 16.40 -4.14 -0.07 -9.68 16 12 C -0.18 -0.45 5.98 -19.87 -0.12 -0.57 16 13 C -0.19 1.04 10.38 67.30 0.70 1.74 16 14 S 0.26 -1.60 20.20 -56.49 -1.14 -2.74 16 15 C -0.25 0.05 5.65 24.51 0.14 0.19 16 16 C -0.04 0.02 2.94 71.24 0.21 0.23 16 17 O -0.55 -0.51 12.88 -148.98 -1.92 -2.43 16 18 Si 0.74 -2.90 30.92 68.60 2.12 -0.78 16 19 C -0.08 -0.38 9.95 22.67 0.23 -0.16 16 20 C -0.12 0.51 7.29 31.12 0.23 0.74 16 21 C -0.12 -0.18 8.60 22.27 0.19 0.01 16 22 C -0.14 -0.27 10.05 22.27 0.22 -0.05 16 23 C -0.13 -0.25 10.05 22.27 0.22 -0.03 16 24 C -0.13 -0.19 9.70 22.27 0.22 0.02 16 25 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H 0.07 -0.35 8.09 -2.38 -0.02 -0.37 16 27 H 0.08 -0.55 5.99 -2.39 -0.01 -0.56 16 28 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.09 -0.02 6.32 -2.39 -0.02 -0.04 16 30 H 0.42 -3.47 7.20 -92.71 -0.67 -4.14 16 31 H 0.21 -2.74 7.01 -2.91 -0.02 -2.76 16 32 H 0.11 0.13 7.96 -2.39 -0.02 0.11 16 33 H 0.40 -3.07 8.70 -74.05 -0.64 -3.71 16 34 H -0.26 0.21 7.11 99.48 0.71 0.92 16 35 H -0.27 -0.82 7.11 99.48 0.71 -0.11 16 36 H 0.13 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.10 -0.34 7.71 -2.39 -0.02 -0.36 16 38 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.13 -0.12 6.68 -2.91 -0.02 -0.14 16 40 H 0.13 -0.12 8.06 -2.91 -0.02 -0.15 16 41 H 0.13 -0.16 8.06 -2.91 -0.02 -0.19 16 42 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 Total: 0.00 -21.19 359.61 0.22 -20.98 By element: Atomic # 1 Polarization: -11.84 SS G_CDS: -0.21 Total: -12.05 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 3.75 Total: 8.23 kcal Atomic # 7 Polarization: 0.79 SS G_CDS: -2.32 Total: -1.53 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -1.99 Total: -12.11 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.12 Total: -0.78 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -1.14 Total: -2.74 kcal Total: -21.19 0.22 -20.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_6894386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.248 kcal (2) G-P(sol) polarization free energy of solvation -21.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds