Wall clock time and date at job start Tue Mar 9 2021 13:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38333 * 119.85667 * 2 1 4 4 C 1.37982 * 120.14984 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.07373 * 179.97438 * 4 3 2 6 6 C 1.39556 * 119.84983 * 0.04159 * 4 3 2 7 7 C 1.47840 * 120.14490 * 180.02562 * 6 4 3 8 8 O 1.21553 * 119.99776 * 6.20652 * 7 6 4 9 9 N 1.34775 * 120.00341 * 186.20975 * 7 6 4 10 10 C 1.46496 * 120.00116 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.84914 * 334.66700 * 10 9 7 12 12 C 1.53778 * 113.61386 * 105.86441 * 10 9 7 13 13 C 1.54055 * 86.98602 * 89.16385 * 12 10 9 14 14 H 1.09007 * 113.60714 * 270.88398 * 13 12 10 15 15 C 1.50701 * 113.69686 * 139.99338 * 13 12 10 16 16 C 1.38215 * 119.99693 * 142.46784 * 15 13 12 17 17 C 1.50694 * 120.00317 * 359.97438 * 16 15 13 18 18 C 1.38256 * 119.99341 * 179.97438 * 16 15 13 19 19 C 1.38212 * 120.00387 * 359.95737 * 18 16 15 20 20 C 1.38254 * 120.00097 * 359.97438 * 19 18 16 21 21 C 1.38216 * 119.99688 * 359.81827 * 20 19 18 22 22 C 1.53780 * 87.07801 * 25.43096 * 13 12 10 23 23 C 1.39600 * 119.71047 * 359.95950 * 6 4 3 24 24 C 1.37929 * 119.85528 * 0.02562 * 23 6 4 25 25 C 1.50701 * 119.93016 * 179.97438 * 24 23 6 26 26 O 1.42896 * 109.47388 * 104.99603 * 25 24 23 27 27 Si 1.86303 * 109.46645 * 344.99471 * 25 24 23 28 28 H 1.09003 * 109.46425 * 270.02118 * 1 2 3 29 29 H 1.08995 * 109.47114 * 30.01800 * 1 2 3 30 30 H 1.09005 * 109.47166 * 150.02267 * 1 2 3 31 31 H 1.08005 * 119.92382 * 359.97438 * 3 2 1 32 32 H 1.09007 * 109.47021 * 96.59419 * 5 4 3 33 33 H 1.08995 * 109.46950 * 216.58733 * 5 4 3 34 34 H 1.08999 * 109.47315 * 336.59279 * 5 4 3 35 35 H 0.96998 * 119.99832 * 0.02562 * 9 7 6 36 36 H 1.08998 * 113.61817 * 203.66124 * 12 10 9 37 37 H 1.09003 * 113.61711 * 334.57145 * 12 10 9 38 38 H 1.09001 * 109.47300 * 90.00453 * 17 16 15 39 39 H 1.09000 * 109.47169 * 210.00345 * 17 16 15 40 40 H 1.08999 * 109.47550 * 330.00126 * 17 16 15 41 41 H 1.07999 * 119.99634 * 179.97438 * 18 16 15 42 42 H 1.08000 * 120.00396 * 180.02562 * 19 18 16 43 43 H 1.07997 * 120.00405 * 180.02562 * 20 19 18 44 44 H 1.07997 * 120.00081 * 180.23421 * 21 20 19 45 45 H 1.08991 * 113.61576 * 220.02522 * 22 13 12 46 46 H 1.08999 * 113.61481 * 89.11819 * 22 13 12 47 47 H 1.08003 * 120.06843 * 180.29534 * 23 6 4 48 48 H 1.08999 * 109.47112 * 224.99904 * 25 24 23 49 49 H 0.96701 * 114.00332 * 300.00185 * 26 25 24 50 50 H 1.48504 * 109.99884 * 180.02562 * 27 25 24 51 51 H 1.48495 * 110.00305 * 301.31958 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1997 0.0000 4 6 3.5755 1.2068 0.0005 5 6 4.3240 2.5147 -0.0001 6 6 4.2763 -0.0001 0.0002 7 6 5.7547 -0.0001 0.0013 8 8 6.3624 1.0463 0.1164 9 7 6.4287 -1.1603 -0.1252 10 6 7.8936 -1.1603 -0.1247 11 1 8.3170 -0.2110 -0.4531 12 6 8.5092 -1.6904 1.1810 13 6 8.4565 -3.0911 0.5418 14 1 7.5202 -3.6190 0.7236 15 6 9.6704 -3.9355 0.8323 16 6 9.5312 -5.2927 1.0536 17 6 8.1655 -5.9280 1.0048 18 6 10.6450 -6.0674 1.3196 19 6 11.8976 -5.4850 1.3634 20 6 12.0369 -4.1276 1.1407 21 6 10.9240 -3.3538 0.8705 22 6 8.5100 -2.3841 -0.8228 23 6 3.5752 -1.2072 0.0002 24 6 2.1959 -1.2002 0.0000 25 6 1.4374 -2.5024 -0.0007 26 8 0.8962 -2.7391 1.3005 27 14 2.5910 -3.8927 -0.4558 28 1 -0.3632 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6521 2.1330 -0.0004 32 1 4.6065 2.7722 1.0208 33 1 5.2208 2.4198 -0.6121 34 1 3.6861 3.2982 -0.4091 35 1 5.9438 -1.9953 -0.2175 36 1 9.5221 -1.3317 1.3635 37 1 7.8573 -1.5796 2.0476 38 1 7.9540 -6.2572 -0.0125 39 1 8.1396 -6.7856 1.6771 40 1 7.4151 -5.2007 1.3147 41 1 10.5362 -7.1279 1.4929 42 1 12.7677 -6.0902 1.5708 43 1 13.0157 -3.6725 1.1745 44 1 11.0332 -2.2942 0.6928 45 1 7.8589 -2.8328 -1.5729 46 1 9.5232 -2.2145 -1.1872 47 1 4.1117 -2.1446 0.0047 48 1 0.6267 -2.4503 -0.7274 49 1 1.5624 -2.7973 1.9990 50 1 1.8549 -5.1825 -0.4605 51 1 3.1850 -3.6426 -1.7935 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9744652_9599494.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:18:57 Heat of formation + Delta-G solvation = 11.951990 kcal Electronic energy + Delta-G solvation = -30980.896958 eV Core-core repulsion = 27005.243005 eV Total energy + Delta-G solvation = -3975.653953 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.183 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.90918 -41.11776 -39.99419 -38.74892 -37.55399 -34.98687 -34.39637 -33.72750 -33.11482 -31.52453 -29.31290 -28.59004 -27.75059 -26.65677 -26.10001 -25.52696 -23.78964 -23.28769 -22.37045 -21.80062 -21.01456 -19.99389 -19.08340 -17.77360 -17.40997 -17.31233 -16.68926 -16.45678 -16.38415 -16.22979 -16.07609 -15.77800 -15.55221 -15.03537 -15.00606 -14.78971 -14.63510 -14.55569 -14.26838 -14.11935 -13.92967 -13.90718 -13.57609 -13.38242 -13.37304 -13.10606 -13.07594 -12.84420 -12.77706 -12.65039 -12.61248 -12.49048 -12.14393 -11.99525 -11.82570 -11.65464 -11.43600 -11.11481 -10.72668 -10.41622 -10.14758 -9.89341 -9.64250 -9.59946 -9.37326 -5.06929 -0.25591 0.17071 0.47676 0.52677 1.28536 1.61990 1.74718 1.97276 2.03700 2.64774 2.84587 3.44565 3.49599 3.51497 3.64106 3.73217 3.74836 3.77652 3.81745 3.99322 4.06827 4.11690 4.14845 4.19338 4.23374 4.29208 4.44742 4.47448 4.50773 4.56573 4.63645 4.66994 4.70100 4.76746 4.79612 4.80636 4.85606 4.88045 4.91354 4.93479 4.98991 5.03853 5.06685 5.07055 5.12361 5.19048 5.23928 5.27492 5.40434 5.48043 5.50086 5.57997 5.67961 5.68941 5.79971 5.84085 6.19107 6.47135 6.77613 7.16389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.033 4.033 3 C -0.137 4.137 4 C -0.025 4.025 5 C -0.118 4.118 6 C -0.157 4.157 7 C 0.560 3.440 8 O -0.561 6.561 9 N -0.697 5.697 10 C 0.118 3.882 11 H 0.087 0.913 12 C -0.141 4.141 13 C -0.070 4.070 14 H 0.121 0.879 15 C -0.080 4.080 16 C -0.093 4.093 17 C -0.121 4.121 18 C -0.135 4.135 19 C -0.135 4.135 20 C -0.139 4.139 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.063 4.063 24 C -0.140 4.140 25 C -0.071 4.071 26 O -0.550 6.550 27 Si 0.760 3.240 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.412 0.588 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.154 0.846 48 H 0.111 0.889 49 H 0.394 0.606 50 H -0.295 1.295 51 H -0.277 1.277 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.651 -3.407 0.577 3.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.033 4.033 3 C -0.155 4.155 4 C -0.027 4.027 5 C -0.175 4.175 6 C -0.160 4.160 7 C 0.349 3.651 8 O -0.441 6.441 9 N -0.349 5.349 10 C 0.012 3.988 11 H 0.105 0.895 12 C -0.180 4.180 13 C -0.088 4.088 14 H 0.139 0.861 15 C -0.080 4.080 16 C -0.093 4.093 17 C -0.177 4.177 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.141 4.141 22 C -0.165 4.165 23 C -0.081 4.081 24 C -0.140 4.140 25 C -0.181 4.181 26 O -0.358 6.358 27 Si 0.665 3.335 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.161 0.839 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.250 0.750 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.106 0.894 46 H 0.116 0.884 47 H 0.170 0.830 48 H 0.128 0.872 49 H 0.244 0.756 50 H -0.223 1.223 51 H -0.203 1.203 Dipole moment (debyes) X Y Z Total from point charges -0.584 -3.306 -0.241 3.366 hybrid contribution -0.310 0.167 -0.180 0.396 sum -0.894 -3.139 -0.421 3.291 Atomic orbital electron populations 1.20932 0.89761 1.03427 1.03440 1.20223 0.97227 0.92222 0.93663 1.21172 0.92861 0.98822 1.02634 1.20219 0.93926 0.95040 0.93467 1.21022 1.00420 0.92889 1.03130 1.19657 0.92205 0.94315 1.09842 1.18396 0.87349 0.83675 0.75653 1.90742 1.70551 1.32079 1.50712 1.45490 1.06543 1.09196 1.73705 1.21840 0.79462 0.99781 0.97670 0.89474 1.23580 1.01925 0.95187 0.97274 1.21771 0.96867 0.93694 0.96466 0.86149 1.19710 0.94766 0.93422 1.00077 1.20111 0.96734 0.93434 0.99013 1.20949 0.92528 1.01142 1.03083 1.21308 0.92562 1.00434 1.00988 1.21392 0.98022 0.95514 1.00326 1.21368 0.99380 0.94403 1.00560 1.21206 0.92299 1.00423 1.00202 1.23368 1.02349 0.94295 0.96450 1.21170 0.93363 0.96834 0.96741 1.20195 0.93449 0.95943 1.04409 1.25163 1.03770 0.99723 0.89435 1.86489 1.38336 1.94398 1.16544 0.94257 0.82032 0.74136 0.83111 0.89993 0.90481 0.90998 0.83861 0.91101 0.90349 0.90963 0.75001 0.88888 0.91040 0.90350 0.91202 0.89633 0.85195 0.85286 0.85276 0.85168 0.89393 0.88447 0.82953 0.87190 0.75578 1.22253 1.20335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.25 9.53 71.24 0.68 0.93 16 2 C -0.03 0.00 5.89 -19.80 -0.12 -0.12 16 3 C -0.14 -0.15 9.31 22.23 0.21 0.06 16 4 C -0.03 -0.09 5.91 -19.61 -0.12 -0.21 16 5 C -0.12 -0.53 8.73 71.24 0.62 0.09 16 6 C -0.16 -0.32 5.87 -20.09 -0.12 -0.44 16 7 C 0.56 2.21 7.70 86.79 0.67 2.88 16 8 O -0.56 -6.16 12.97 -3.88 -0.05 -6.21 16 9 N -0.70 1.77 5.21 -442.91 -2.31 -0.54 16 10 C 0.12 -0.23 4.29 45.52 0.20 -0.04 16 11 H 0.09 0.20 7.50 -2.39 -0.02 0.19 16 12 C -0.14 0.39 7.27 31.21 0.23 0.62 16 13 C -0.07 0.35 3.58 -10.92 -0.04 0.31 16 14 H 0.12 -1.06 5.76 -2.38 -0.01 -1.07 16 15 C -0.08 0.06 5.29 -19.87 -0.11 -0.05 16 16 C -0.09 0.03 5.88 -19.87 -0.12 -0.08 16 17 C -0.12 0.68 9.53 71.23 0.68 1.36 16 18 C -0.13 -0.14 9.70 22.27 0.22 0.08 16 19 C -0.13 -0.22 10.05 22.27 0.22 0.01 16 20 C -0.14 -0.20 10.05 22.27 0.22 0.02 16 21 C -0.12 -0.06 8.60 22.27 0.19 0.13 16 22 C -0.13 0.65 7.29 31.12 0.23 0.87 16 23 C -0.06 0.19 8.13 22.53 0.18 0.37 16 24 C -0.14 0.25 5.26 -19.90 -0.10 0.15 16 25 C -0.07 0.24 2.04 71.24 0.15 0.38 16 26 O -0.55 1.57 12.80 -148.98 -1.91 -0.33 16 27 Si 0.76 -4.22 29.91 68.60 2.05 -2.17 16 28 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.08 -0.29 8.08 -2.39 -0.02 -0.31 16 30 H 0.07 -0.15 6.22 -2.38 -0.01 -0.17 16 31 H 0.14 -0.28 8.06 -2.91 -0.02 -0.31 16 32 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.08 0.66 5.86 -2.39 -0.01 0.64 16 34 H 0.07 0.08 8.04 -2.39 -0.02 0.06 16 35 H 0.41 -3.54 6.78 -92.71 -0.63 -4.17 16 36 H 0.09 -0.21 6.34 -2.39 -0.02 -0.22 16 37 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.07 -0.41 8.09 -2.39 -0.02 -0.43 16 40 H 0.09 -0.75 5.99 -2.39 -0.01 -0.77 16 41 H 0.13 -0.25 8.06 -2.91 -0.02 -0.27 16 42 H 0.13 -0.17 8.06 -2.91 -0.02 -0.19 16 43 H 0.13 -0.17 8.06 -2.91 -0.02 -0.20 16 44 H 0.13 -0.27 6.69 -2.91 -0.02 -0.29 16 45 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 46 H 0.10 -0.42 7.71 -2.39 -0.02 -0.44 16 47 H 0.15 -1.50 3.53 -2.91 -0.01 -1.51 16 48 H 0.11 -0.25 6.48 -2.39 -0.02 -0.26 16 49 H 0.39 -4.14 8.70 -74.06 -0.64 -4.79 16 50 H -0.29 -0.66 7.11 99.48 0.71 0.05 16 51 H -0.28 0.33 7.11 99.48 0.71 1.04 16 Total: 0.00 -17.95 399.70 1.50 -16.46 By element: Atomic # 1 Polarization: -14.27 SS G_CDS: -0.26 Total: -14.53 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 3.97 Total: 7.33 kcal Atomic # 7 Polarization: 1.77 SS G_CDS: -2.31 Total: -0.54 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -1.96 Total: -6.54 kcal Atomic # 14 Polarization: -4.22 SS G_CDS: 2.05 Total: -2.17 kcal Total: -17.95 1.50 -16.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9744652_9599494.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.409 kcal (2) G-P(sol) polarization free energy of solvation -17.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds