Wall clock time and date at job start Tue Mar 9 2021 12:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42891 * 114.00207 * 2 1 4 4 H 1.09007 * 112.85241 * 18.80081 * 3 2 1 5 5 C 1.53788 * 113.61759 * 150.00034 * 3 2 1 6 6 C 1.53783 * 87.07965 * 140.06365 * 5 3 2 7 7 H 1.09003 * 113.61423 * 89.19934 * 6 5 3 8 8 N 1.46501 * 113.61126 * 220.01584 * 6 5 3 9 9 C 1.46500 * 119.99618 * 54.01739 * 8 6 5 10 10 C 1.38612 * 120.00016 * 234.01175 * 8 6 5 11 11 N 1.29689 * 124.94726 * 179.97438 * 10 8 6 12 12 C 1.32122 * 116.86471 * 180.02562 * 11 10 8 13 13 C 1.50695 * 122.70915 * 180.02562 * 12 11 10 14 14 O 1.42903 * 109.47357 * 304.57514 * 13 12 11 15 15 Si 1.86300 * 109.47281 * 64.57924 * 13 12 11 16 16 C 1.33331 * 114.57894 * 0.02562 * 12 11 10 17 17 C 1.50695 * 125.94974 * 180.02562 * 16 12 11 18 18 S 1.70965 * 124.94899 * 0.36236 * 10 8 6 19 19 C 1.53782 * 87.08295 * 334.56878 * 6 5 3 20 20 H 1.08999 * 109.47401 * 60.00264 * 1 2 3 21 21 H 1.09002 * 109.47142 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46887 * 300.00145 * 1 2 3 23 23 H 1.08992 * 113.61262 * 25.51315 * 5 3 2 24 24 H 1.08998 * 113.60828 * 254.61175 * 5 3 2 25 25 H 1.08999 * 109.47051 * 267.95941 * 9 8 6 26 26 H 1.08990 * 109.47561 * 27.96279 * 9 8 6 27 27 H 1.09007 * 109.47032 * 147.96366 * 9 8 6 28 28 H 1.09004 * 109.47403 * 184.58012 * 13 12 11 29 29 H 0.96701 * 113.99700 * 60.00064 * 14 13 12 30 30 H 1.48497 * 109.99909 * 58.67866 * 15 13 12 31 31 H 1.48500 * 110.00326 * 180.02562 * 15 13 12 32 32 H 1.08998 * 109.47703 * 84.35526 * 17 16 12 33 33 H 1.08998 * 109.46851 * 204.36484 * 17 16 12 34 34 H 1.09002 * 109.47020 * 324.35452 * 17 16 12 35 35 H 1.08996 * 113.61281 * 139.98326 * 19 6 5 36 36 H 1.08999 * 113.60906 * 270.88291 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0789 0.3237 5 6 3.3756 1.3718 0.7045 6 6 3.8220 2.3198 -0.4211 7 1 3.6221 3.3707 -0.2118 8 7 5.1929 2.0818 -0.8795 9 6 5.5976 0.7426 -1.3144 10 6 6.1070 3.1236 -0.9019 11 7 7.3409 3.0211 -1.2877 12 6 8.0736 4.1196 -1.2430 13 6 9.5212 4.1504 -1.6605 14 8 10.2513 3.1693 -0.9212 15 14 9.6504 3.7789 -3.4815 16 6 7.4287 5.1987 -0.7987 17 6 8.0145 6.5786 -0.6450 18 16 5.7746 4.7287 -0.4162 19 6 2.7531 1.6509 -1.3014 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 3.9094 0.4216 0.7125 24 1 3.3381 1.8458 1.6854 25 1 6.0137 0.1961 -0.4681 26 1 4.7298 0.2083 -1.7008 27 1 6.3507 0.8272 -2.0980 28 1 9.9360 5.1385 -1.4610 29 1 9.9361 2.2643 -1.0508 30 1 8.8692 4.7737 -4.2595 31 1 11.0733 3.8057 -3.9057 32 1 7.9635 7.1034 -1.5989 33 1 7.4491 7.1318 0.1049 34 1 9.0548 6.4986 -0.3295 35 1 2.2132 2.3502 -1.9399 36 1 3.1169 0.7770 -1.8418 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_10122444_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:08 Heat of formation + Delta-G solvation = 10.906676 kcal Electronic energy + Delta-G solvation = -19020.374609 eV Core-core repulsion = 16020.607604 eV Total energy + Delta-G solvation = -2999.767006 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.30602 -40.65669 -38.22079 -37.23148 -35.48564 -33.04987 -29.24911 -28.59503 -27.74874 -26.91112 -25.90865 -25.08623 -23.00980 -20.76406 -20.01627 -19.42435 -18.09660 -17.77104 -17.14872 -16.96577 -16.56318 -16.13045 -15.74504 -15.54364 -15.21418 -15.01727 -14.82169 -14.06158 -14.02736 -13.93082 -13.65806 -13.48861 -13.28342 -13.08523 -12.88938 -12.75906 -12.42440 -12.23897 -12.15107 -11.92017 -11.70591 -10.81151 -10.59957 -10.54987 -10.30459 -9.91060 -8.45290 -4.85878 0.03625 0.18910 0.81204 1.33201 1.68157 1.73544 1.93997 2.15354 2.77801 3.21752 3.30273 3.38358 3.59728 3.60581 3.72701 3.97513 4.04858 4.16920 4.23139 4.29974 4.36589 4.44534 4.50483 4.55202 4.59985 4.62245 4.67868 4.72397 4.75963 4.81998 4.92021 4.94939 5.01122 5.21718 5.69523 6.02738 6.12509 6.66149 6.96841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.065 3.935 4 H 0.093 0.907 5 C -0.148 4.148 6 C 0.131 3.869 7 H 0.111 0.889 8 N -0.568 5.568 9 C 0.097 3.903 10 C 0.323 3.677 11 N -0.539 5.539 12 C 0.078 3.922 13 C -0.031 4.031 14 O -0.536 6.536 15 Si 0.704 3.296 16 C -0.254 4.254 17 C -0.072 4.072 18 S 0.092 5.908 19 C -0.167 4.167 20 H 0.043 0.957 21 H 0.088 0.912 22 H 0.044 0.956 23 H 0.101 0.899 24 H 0.082 0.918 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.119 0.881 29 H 0.383 0.617 30 H -0.259 1.259 31 H -0.249 1.249 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 -0.685 -0.226 4.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.291 6.291 3 C 0.006 3.994 4 H 0.111 0.889 5 C -0.187 4.187 6 C 0.026 3.974 7 H 0.129 0.871 8 N -0.286 5.286 9 C -0.047 4.047 10 C -0.047 4.047 11 N -0.265 5.265 12 C -0.053 4.053 13 C -0.144 4.144 14 O -0.342 6.342 15 Si 0.604 3.396 16 C -0.377 4.377 17 C -0.131 4.131 18 S 0.343 5.657 19 C -0.206 4.206 20 H 0.062 0.938 21 H 0.106 0.894 22 H 0.062 0.938 23 H 0.120 0.880 24 H 0.100 0.900 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.136 0.864 29 H 0.231 0.769 30 H -0.183 1.183 31 H -0.174 1.174 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.864 -0.165 -0.607 4.905 hybrid contribution 0.345 0.563 0.321 0.734 sum -4.520 0.398 -0.286 4.546 Atomic orbital electron populations 1.22845 0.80638 1.03185 1.00155 1.87952 1.20078 1.26594 1.94507 1.23421 0.93816 0.86037 0.96108 0.88884 1.23763 0.95382 1.01050 0.98509 1.22374 0.79370 0.99622 0.96047 0.87115 1.45786 1.07582 1.06618 1.68615 1.21728 1.01151 0.81367 1.00475 1.23289 0.90983 0.92572 0.97821 1.65955 1.02974 1.30110 1.27425 1.20081 0.97644 0.87208 1.00333 1.24740 0.85597 0.95523 1.08548 1.86453 1.57615 1.19346 1.70742 0.93964 0.81077 0.90791 0.73729 1.25040 0.95774 1.01695 1.15150 1.20175 1.00730 0.89747 1.02434 1.83847 1.12963 1.02819 1.66100 1.24050 0.96605 1.01888 0.98033 0.93809 0.89370 0.93770 0.88034 0.89969 0.92637 0.90630 0.89979 0.86396 0.76865 1.18324 1.17375 0.90966 0.91186 0.90379 0.90150 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.85 101.05 1.10 1.05 16 2 O -0.37 -0.17 10.72 -35.23 -0.38 -0.54 16 3 C 0.06 -0.10 4.31 -25.91 -0.11 -0.21 16 4 H 0.09 -0.28 7.87 -51.93 -0.41 -0.68 16 5 C -0.15 0.21 7.50 -25.91 -0.19 0.02 16 6 C 0.13 -0.17 4.26 -67.12 -0.29 -0.46 16 7 H 0.11 -0.20 6.66 -51.93 -0.35 -0.55 16 8 N -0.57 -0.16 3.19 -175.33 -0.56 -0.72 16 9 C 0.10 -0.09 9.56 59.85 0.57 0.48 16 10 C 0.32 0.70 7.74 -87.68 -0.68 0.02 16 11 N -0.54 -1.56 9.33 -11.36 -0.11 -1.66 16 12 C 0.08 0.23 4.97 -84.18 -0.42 -0.19 16 13 C -0.03 -0.06 2.88 36.00 0.10 0.04 16 14 O -0.54 -1.43 12.88 -35.23 -0.45 -1.88 16 15 Si 0.70 0.80 32.90 -169.99 -5.59 -4.79 16 16 C -0.25 -0.62 6.57 -36.02 -0.24 -0.85 16 17 C -0.07 -0.02 9.80 36.00 0.35 0.33 16 18 S 0.09 0.13 21.51 -107.50 -2.31 -2.18 16 19 C -0.17 0.31 7.42 -25.92 -0.19 0.11 16 20 H 0.04 -0.11 8.14 -51.93 -0.42 -0.53 16 21 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 22 H 0.04 -0.11 8.14 -51.93 -0.42 -0.53 16 23 H 0.10 -0.06 7.47 -51.93 -0.39 -0.45 16 24 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 25 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 26 H 0.08 -0.16 5.78 -51.93 -0.30 -0.46 16 27 H 0.08 -0.05 7.68 -51.92 -0.40 -0.45 16 28 H 0.12 0.15 6.19 -51.93 -0.32 -0.17 16 29 H 0.38 0.00 8.63 45.56 0.39 0.39 16 30 H -0.26 -0.92 7.11 56.52 0.40 -0.52 16 31 H -0.25 -0.80 7.11 56.52 0.40 -0.40 16 32 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 33 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 34 H 0.08 -0.02 7.00 -51.93 -0.36 -0.38 16 35 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 36 H 0.10 -0.15 5.96 -51.93 -0.31 -0.45 16 LS Contribution 308.96 15.07 4.66 4.66 Total: 0.00 -5.42 308.96 -9.76 -15.18 By element: Atomic # 1 Polarization: -3.37 SS G_CDS: -5.02 Total: -8.39 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 0.01 Total: 0.34 kcal Atomic # 7 Polarization: -1.71 SS G_CDS: -0.67 Total: -2.38 kcal Atomic # 8 Polarization: -1.60 SS G_CDS: -0.83 Total: -2.43 kcal Atomic # 14 Polarization: 0.80 SS G_CDS: -5.59 Total: -4.79 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.31 Total: -2.18 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -5.42 -9.76 -15.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10122444_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.086 kcal (2) G-P(sol) polarization free energy of solvation -5.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds