Wall clock time and date at job start Tue Mar 9 2021 12:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42891 * 114.00207 * 2 1 4 4 H 1.09007 * 112.85241 * 18.80081 * 3 2 1 5 5 C 1.53788 * 113.61759 * 150.00034 * 3 2 1 6 6 C 1.53783 * 87.07965 * 140.06365 * 5 3 2 7 7 H 1.09003 * 113.61423 * 89.19934 * 6 5 3 8 8 N 1.46501 * 113.61126 * 220.01584 * 6 5 3 9 9 C 1.46500 * 119.99618 * 54.01739 * 8 6 5 10 10 C 1.38612 * 120.00016 * 234.01175 * 8 6 5 11 11 N 1.29689 * 124.94726 * 179.97438 * 10 8 6 12 12 C 1.32122 * 116.86471 * 180.02562 * 11 10 8 13 13 C 1.50695 * 122.70915 * 180.02562 * 12 11 10 14 14 O 1.42903 * 109.47357 * 304.57514 * 13 12 11 15 15 Si 1.86300 * 109.47281 * 64.57924 * 13 12 11 16 16 C 1.33331 * 114.57894 * 0.02562 * 12 11 10 17 17 C 1.50695 * 125.94974 * 180.02562 * 16 12 11 18 18 S 1.70965 * 124.94899 * 0.36236 * 10 8 6 19 19 C 1.53782 * 87.08295 * 334.56878 * 6 5 3 20 20 H 1.08999 * 109.47401 * 60.00264 * 1 2 3 21 21 H 1.09002 * 109.47142 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46887 * 300.00145 * 1 2 3 23 23 H 1.08992 * 113.61262 * 25.51315 * 5 3 2 24 24 H 1.08998 * 113.60828 * 254.61175 * 5 3 2 25 25 H 1.08999 * 109.47051 * 267.95941 * 9 8 6 26 26 H 1.08990 * 109.47561 * 27.96279 * 9 8 6 27 27 H 1.09007 * 109.47032 * 147.96366 * 9 8 6 28 28 H 1.09004 * 109.47403 * 184.58012 * 13 12 11 29 29 H 0.96701 * 113.99700 * 60.00064 * 14 13 12 30 30 H 1.48497 * 109.99909 * 58.67866 * 15 13 12 31 31 H 1.48500 * 110.00326 * 180.02562 * 15 13 12 32 32 H 1.08998 * 109.47703 * 84.35526 * 17 16 12 33 33 H 1.08998 * 109.46851 * 204.36484 * 17 16 12 34 34 H 1.09002 * 109.47020 * 324.35452 * 17 16 12 35 35 H 1.08996 * 113.61281 * 139.98326 * 19 6 5 36 36 H 1.08999 * 113.60906 * 270.88291 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0789 0.3237 5 6 3.3756 1.3718 0.7045 6 6 3.8220 2.3198 -0.4211 7 1 3.6221 3.3707 -0.2118 8 7 5.1929 2.0818 -0.8795 9 6 5.5976 0.7426 -1.3144 10 6 6.1070 3.1236 -0.9019 11 7 7.3409 3.0211 -1.2877 12 6 8.0736 4.1196 -1.2430 13 6 9.5212 4.1504 -1.6605 14 8 10.2513 3.1693 -0.9212 15 14 9.6504 3.7789 -3.4815 16 6 7.4287 5.1987 -0.7987 17 6 8.0145 6.5786 -0.6450 18 16 5.7746 4.7287 -0.4162 19 6 2.7531 1.6509 -1.3014 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 3.9094 0.4216 0.7125 24 1 3.3381 1.8458 1.6854 25 1 6.0137 0.1961 -0.4681 26 1 4.7298 0.2083 -1.7008 27 1 6.3507 0.8272 -2.0980 28 1 9.9360 5.1385 -1.4610 29 1 9.9361 2.2643 -1.0508 30 1 8.8692 4.7737 -4.2595 31 1 11.0733 3.8057 -3.9057 32 1 7.9635 7.1034 -1.5989 33 1 7.4491 7.1318 0.1049 34 1 9.0548 6.4986 -0.3295 35 1 2.2132 2.3502 -1.9399 36 1 3.1169 0.7770 -1.8418 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_10122444_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:08 Heat of formation + Delta-G solvation = 15.026884 kcal Electronic energy + Delta-G solvation = -19020.195944 eV Core-core repulsion = 16020.607604 eV Total energy + Delta-G solvation = -2999.588340 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31161 -40.66021 -38.20208 -37.33292 -35.47223 -33.09008 -29.30779 -28.55040 -27.64294 -26.78137 -25.96464 -25.08819 -23.01781 -20.68008 -20.09851 -19.43559 -18.10707 -17.91361 -17.12415 -16.85282 -16.57806 -16.13086 -15.77904 -15.50151 -15.33965 -14.93885 -14.80248 -14.25834 -14.07641 -13.86748 -13.64717 -13.50239 -13.19084 -13.04080 -12.89736 -12.68120 -12.48443 -12.24078 -12.04953 -11.85536 -11.74506 -10.90081 -10.65941 -10.48127 -10.41271 -10.01842 -8.50810 -4.97343 -0.08285 0.10437 0.69902 1.20965 1.58266 1.69239 1.78238 2.00167 2.91865 3.23062 3.40470 3.43604 3.63221 3.73812 3.75562 3.95576 4.13150 4.14626 4.29446 4.39742 4.47138 4.56658 4.62266 4.64182 4.65346 4.71373 4.75507 4.83061 4.88709 4.92474 4.93675 4.98207 5.10953 5.17790 5.72768 6.00209 6.26921 6.62051 6.86073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.397 6.397 3 C 0.064 3.936 4 H 0.109 0.891 5 C -0.147 4.147 6 C 0.128 3.872 7 H 0.117 0.883 8 N -0.567 5.567 9 C 0.097 3.903 10 C 0.310 3.690 11 N -0.551 5.551 12 C 0.064 3.936 13 C -0.036 4.036 14 O -0.550 6.550 15 Si 0.773 3.227 16 C -0.272 4.272 17 C -0.073 4.073 18 S 0.108 5.892 19 C -0.161 4.161 20 H 0.051 0.949 21 H 0.090 0.910 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.123 0.877 29 H 0.393 0.607 30 H -0.291 1.291 31 H -0.277 1.277 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.508 -0.562 -0.051 5.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.006 3.994 4 H 0.127 0.873 5 C -0.186 4.186 6 C 0.024 3.976 7 H 0.135 0.865 8 N -0.285 5.285 9 C -0.047 4.047 10 C -0.060 4.060 11 N -0.278 5.278 12 C -0.067 4.067 13 C -0.149 4.149 14 O -0.357 6.357 15 Si 0.676 3.324 16 C -0.395 4.395 17 C -0.132 4.132 18 S 0.359 5.641 19 C -0.200 4.200 20 H 0.069 0.931 21 H 0.109 0.891 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.105 0.895 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.140 0.860 29 H 0.243 0.757 30 H -0.218 1.218 31 H -0.203 1.203 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.637 -0.067 -0.414 5.653 hybrid contribution 0.542 0.519 0.280 0.801 sum -5.095 0.452 -0.135 5.116 Atomic orbital electron populations 1.22960 0.79726 1.03671 1.00903 1.87916 1.21242 1.27739 1.94640 1.23530 0.93921 0.85844 0.96109 0.87306 1.23733 0.95533 1.00561 0.98757 1.22493 0.78720 1.00028 0.96325 0.86547 1.45995 1.07817 1.06553 1.68120 1.21770 1.01618 0.80999 1.00325 1.23569 0.91197 0.93370 0.97856 1.65962 1.03378 1.30315 1.28139 1.20241 0.98024 0.87529 1.00902 1.24881 0.85347 0.95689 1.08981 1.86418 1.57994 1.20200 1.71050 0.93079 0.78033 0.89413 0.71834 1.25408 0.96461 1.02507 1.15076 1.20246 1.00942 0.88900 1.03082 1.83686 1.12354 1.02224 1.65872 1.24003 0.96276 1.01742 0.98006 0.93066 0.89127 0.92991 0.88963 0.89500 0.92749 0.89431 0.90366 0.85999 0.75741 1.21767 1.20349 0.90278 0.90415 0.90038 0.89327 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 10.85 113.37 1.23 1.14 16 2 O -0.40 -0.26 10.72 -148.98 -1.60 -1.85 16 3 C 0.06 -0.23 4.31 31.12 0.13 -0.10 16 4 H 0.11 -0.77 7.87 -2.38 -0.02 -0.79 16 5 C -0.15 0.45 7.50 31.12 0.23 0.68 16 6 C 0.13 -0.38 4.26 45.52 0.19 -0.18 16 7 H 0.12 -0.49 6.66 -2.39 -0.02 -0.50 16 8 N -0.57 -0.34 3.19 -708.62 -2.26 -2.60 16 9 C 0.10 -0.16 9.56 127.77 1.22 1.06 16 10 C 0.31 1.40 7.74 179.32 1.39 2.78 16 11 N -0.55 -3.42 9.33 -189.86 -1.77 -5.19 16 12 C 0.06 0.40 4.97 41.40 0.21 0.60 16 13 C -0.04 -0.16 2.88 71.23 0.20 0.05 16 14 O -0.55 -3.13 12.88 -148.98 -1.92 -5.05 16 15 Si 0.77 2.25 32.90 68.60 2.26 4.51 16 16 C -0.27 -1.37 6.57 24.57 0.16 -1.21 16 17 C -0.07 -0.04 9.80 71.23 0.70 0.66 16 18 S 0.11 0.30 21.51 -56.49 -1.22 -0.91 16 19 C -0.16 0.67 7.42 31.12 0.23 0.91 16 20 H 0.05 -0.29 8.14 -2.39 -0.02 -0.31 16 21 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 22 H 0.05 -0.30 8.14 -2.39 -0.02 -0.32 16 23 H 0.09 -0.09 7.47 -2.39 -0.02 -0.11 16 24 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 25 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 26 H 0.09 -0.37 5.78 -2.39 -0.01 -0.38 16 27 H 0.08 -0.06 7.68 -2.38 -0.02 -0.07 16 28 H 0.12 0.36 6.19 -2.38 -0.01 0.34 16 29 H 0.39 0.16 8.63 -74.06 -0.64 -0.48 16 30 H -0.29 -2.39 7.11 99.48 0.71 -1.68 16 31 H -0.28 -2.03 7.11 99.48 0.71 -1.32 16 32 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.08 -0.03 7.00 -2.39 -0.02 -0.05 16 35 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H 0.10 -0.30 5.96 -2.39 -0.01 -0.32 16 Total: 0.00 -12.24 308.96 -0.12 -12.36 By element: Atomic # 1 Polarization: -8.14 SS G_CDS: 0.49 Total: -7.65 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.90 Total: 6.38 kcal Atomic # 7 Polarization: -3.76 SS G_CDS: -4.03 Total: -7.79 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: -3.52 Total: -6.90 kcal Atomic # 14 Polarization: 2.25 SS G_CDS: 2.26 Total: 4.51 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -1.22 Total: -0.91 kcal Total: -12.24 -0.12 -12.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_10122444_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.383 kcal (2) G-P(sol) polarization free energy of solvation -12.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds